Wall clock time and date at job start Tue Mar 31 2020 11:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47236 * 2 1 4 4 N 1.46897 * 109.47497 * 120.00268 * 2 1 3 5 5 C 1.46898 * 111.00067 * 275.00109 * 4 2 1 6 6 C 1.52999 * 109.47012 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46933 * 180.02562 * 6 5 4 8 8 H 1.07994 * 119.99812 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99879 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99972 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99993 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47369 * 59.99756 * 11 9 7 13 13 H 1.48501 * 109.47192 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47116 * 300.00045 * 11 9 7 15 15 C 1.50709 * 109.47323 * 240.00451 * 2 1 3 16 16 C 1.38285 * 119.92498 * 99.99667 * 15 2 1 17 17 C 1.38109 * 120.07228 * 180.02562 * 16 15 2 18 18 C 1.38905 * 119.92440 * 0.28088 * 17 16 15 19 19 N 1.39669 * 120.07624 * 179.72247 * 18 17 16 20 20 C 1.48005 * 110.99800 * 1.34202 * 19 18 17 21 21 C 1.50451 * 112.82610 * 191.34565 * 20 19 18 22 22 C 1.54317 * 108.49846 * 93.72636 * 21 20 19 23 23 C 1.45878 * 112.18094 * 281.46217 * 22 21 20 24 24 C 1.54307 * 112.18800 * 61.12766 * 23 22 21 25 25 C 1.48003 * 111.00312 * 232.62075 * 19 18 17 26 26 C 1.38915 * 119.85085 * 359.44657 * 18 17 16 27 27 C 1.38102 * 119.92533 * 0.57401 * 26 18 17 28 28 H 1.08999 * 109.46868 * 59.99950 * 1 2 3 29 29 H 1.09003 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47305 * 299.99571 * 1 2 3 31 31 H 1.00901 * 111.00280 * 151.03968 * 4 2 1 32 32 H 1.08997 * 109.46938 * 299.99773 * 5 4 2 33 33 H 1.09000 * 109.47047 * 60.00198 * 5 4 2 34 34 H 1.08997 * 109.47365 * 299.99856 * 6 5 4 35 35 H 1.08998 * 109.47264 * 60.00224 * 6 5 4 36 36 H 0.96993 * 120.00058 * 179.97438 * 10 9 7 37 37 H 1.08002 * 119.96361 * 359.97438 * 16 15 2 38 38 H 1.08000 * 120.03224 * 180.02562 * 17 16 15 39 39 H 1.09006 * 108.80590 * 312.20534 * 20 19 18 40 40 H 1.09000 * 108.81579 * 70.48062 * 20 19 18 41 41 H 1.08995 * 109.63055 * 334.02371 * 21 20 19 42 42 H 1.08993 * 109.62803 * 213.42540 * 21 20 19 43 43 H 1.09001 * 108.93741 * 160.76494 * 22 21 20 44 44 H 1.08994 * 108.93984 * 42.15999 * 22 21 20 45 45 H 1.09004 * 108.94074 * 300.42207 * 23 22 21 46 46 H 1.09007 * 108.93488 * 181.82292 * 23 22 21 47 47 H 1.08997 * 109.63346 * 161.76376 * 24 23 22 48 48 H 1.08991 * 109.63463 * 41.15781 * 24 23 22 49 49 H 1.08998 * 108.80856 * 205.69834 * 25 19 18 50 50 H 1.08998 * 108.81134 * 324.08019 * 25 19 18 51 51 H 1.08002 * 120.03931 * 180.25369 * 26 18 17 52 52 H 1.07996 * 119.96315 * 179.70408 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5952 -0.5334 3.5743 7 6 2.6590 0.4052 4.7517 8 1 2.3631 1.4374 4.6361 9 6 3.0942 -0.0542 5.9767 10 7 3.4531 -1.3115 6.1179 11 14 3.1726 1.1090 7.4363 12 1 1.8162 1.6452 7.7154 13 1 3.6703 0.3754 8.6277 14 1 4.0943 2.2313 7.1259 15 6 2.0324 -0.7103 -1.2306 16 6 2.4585 0.0214 -2.3239 17 6 2.9190 -0.6264 -3.4533 18 6 2.9483 -2.0146 -3.4924 19 7 3.4079 -2.6731 -4.6352 20 6 3.8421 -1.7047 -5.6668 21 6 4.0871 -2.3477 -7.0047 22 6 2.7966 -2.2387 -7.8439 23 6 1.8028 -3.2343 -7.4576 24 6 1.3610 -3.0767 -5.9876 25 6 2.4225 -3.6730 -5.1037 26 6 2.5248 -2.7465 -2.3903 27 6 2.0651 -2.0924 -1.2642 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 2.9173 -1.1206 1.0286 32 1 2.7589 1.0461 2.1182 33 1 1.0871 0.6161 2.5526 34 1 1.9185 -1.3567 3.8028 35 1 3.5905 -0.9273 3.3689 36 1 3.7596 -1.6346 6.9795 37 1 2.4304 1.1007 -2.2948 38 1 3.2520 -0.0543 -4.3066 39 1 3.0716 -0.9419 -5.7792 40 1 4.7625 -1.2251 -5.3336 41 1 4.3454 -3.3973 -6.8648 42 1 4.9004 -1.8322 -7.5153 43 1 3.0460 -2.3774 -8.8959 44 1 2.3711 -1.2441 -7.7111 45 1 2.2265 -4.2291 -7.5951 46 1 0.9298 -3.1313 -8.1023 47 1 0.4176 -3.5997 -5.8306 48 1 1.2404 -2.0193 -5.7527 49 1 2.9473 -4.4498 -5.6598 50 1 1.9420 -4.1260 -4.2366 51 1 2.5502 -3.8259 -2.4159 52 1 1.7313 -2.6609 -0.4088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273301707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:25 Heat of formation + Delta-G solvation = 16.680004 kcal Electronic energy + Delta-G solvation = -26196.461792 eV Core-core repulsion = 22773.817127 eV Total energy + Delta-G solvation = -3422.644664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69289 -38.76993 -36.53088 -34.64803 -33.10252 -32.78250 -31.24817 -30.83671 -28.94141 -27.92854 -26.45217 -25.68112 -24.17745 -22.73862 -22.17851 -20.85716 -20.74766 -20.33916 -19.47604 -17.58851 -16.45621 -16.29455 -15.99710 -15.46692 -15.14177 -14.80370 -14.45588 -14.34615 -14.20698 -13.97721 -13.74913 -13.62085 -13.29460 -13.01309 -12.75393 -12.63576 -12.44041 -12.30485 -12.12328 -11.85253 -11.76379 -11.49285 -11.31553 -11.10600 -11.02416 -11.00900 -10.92418 -10.88341 -10.61389 -10.56881 -10.48833 -9.91555 -9.61376 -9.30949 -9.12011 -8.85528 -8.31869 -7.78524 -7.72274 -5.96378 -3.98848 1.40125 1.48072 3.35550 3.39507 3.39763 3.42190 3.85663 4.23111 4.31837 4.46055 4.49117 4.66448 4.72630 4.78484 4.90822 4.95407 4.97048 5.01252 5.06756 5.20682 5.24875 5.38814 5.39300 5.48014 5.50609 5.52744 5.56538 5.61763 5.69578 5.70755 5.71717 5.79879 5.83597 5.87089 5.94391 6.00554 6.10755 6.16402 6.26172 6.31879 6.44535 6.46493 6.53828 6.77750 6.79149 6.93571 7.04167 7.26801 7.55554 7.77837 7.87115 8.01605 8.13071 8.47410 9.08238 9.64519 11.14989 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.002046 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.934870 B =13681.747934 C =13812.697218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.123 3.877 3 H 0.044 0.956 4 N -0.685 5.685 5 C 0.066 3.934 6 C 0.026 3.974 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C -0.108 4.108 16 C -0.089 4.089 17 C -0.178 4.178 18 C 0.112 3.888 19 N -0.498 5.498 20 C 0.057 3.943 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.148 4.148 25 C 0.059 3.941 26 C -0.145 4.145 27 C -0.072 4.072 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.338 0.662 32 H 0.014 0.986 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.261 0.739 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.122 0.878 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 -3.050 -30.226 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.013 3.987 3 H 0.061 0.939 4 N -0.316 5.316 5 C -0.062 4.062 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.198 4.198 18 C 0.014 3.986 19 N -0.213 5.213 20 C -0.069 4.069 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.187 4.187 25 C -0.066 4.066 26 C -0.165 4.165 27 C -0.091 4.091 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.097 0.903 51 H 0.140 0.860 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.922 -3.722 -29.887 30.259 hybrid contribution 0.354 1.606 0.450 1.705 sum -2.568 -2.116 -29.437 29.624 Atomic orbital electron populations 1.21750 0.94217 1.02224 1.00762 1.20396 0.95736 0.95045 0.87501 0.93853 1.60732 1.33294 1.33945 1.03650 1.22200 0.99534 0.93546 0.90925 1.19058 0.96229 0.95784 0.90089 1.21144 1.43971 0.96320 0.94588 0.92854 1.25007 0.95466 0.95105 0.98834 1.69963 1.44441 1.14305 1.24518 0.86650 0.78380 0.80889 0.82002 1.20246 1.21287 1.20326 1.19983 1.01027 0.94049 0.95823 1.20873 0.97756 0.99424 0.92772 1.21146 1.05771 0.93456 0.99466 1.18855 0.96089 0.91795 0.91870 1.59011 1.38911 1.17793 1.05606 1.21985 1.00535 0.93653 0.90774 1.21467 0.97627 1.02432 0.94521 1.20620 0.95701 0.99850 0.99791 1.20568 0.98929 0.99845 0.96252 1.21919 0.99271 1.02142 0.95356 1.22084 0.91205 0.93897 0.99380 1.20787 1.03369 0.99548 0.92804 1.21003 0.96725 0.93944 0.97392 0.93347 0.92105 0.92330 0.84369 0.96724 0.92316 0.95648 0.96846 0.92965 0.86461 0.86002 0.93303 0.90550 0.90560 0.90780 0.91980 0.92205 0.91886 0.92193 0.90912 0.91480 0.90407 0.90307 0.85971 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.39 37.16 0.35 -1.50 16 2 C 0.12 1.87 2.81 -68.86 -0.19 1.67 16 3 H 0.04 0.67 7.66 -51.93 -0.40 0.27 16 4 N -0.68 -12.45 5.69 -107.96 -0.61 -13.06 16 5 C 0.07 1.42 5.42 -3.83 -0.02 1.40 16 6 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 11 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C -0.11 -1.47 4.72 -104.58 -0.49 -1.97 16 16 C -0.09 -1.10 9.66 -39.61 -0.38 -1.49 16 17 C -0.18 -2.03 8.84 -39.38 -0.35 -2.38 16 18 C 0.11 1.28 5.52 -83.79 -0.46 0.82 16 19 N -0.50 -4.83 4.74 -172.30 -0.82 -5.65 16 20 C 0.06 0.46 3.77 -4.49 -0.02 0.44 16 21 C -0.12 -0.77 5.63 -27.31 -0.15 -0.92 16 22 C -0.12 -0.70 5.30 -29.41 -0.16 -0.85 16 23 C -0.12 -0.69 5.30 -29.42 -0.16 -0.85 16 24 C -0.15 -1.05 5.59 -27.32 -0.15 -1.20 16 25 C 0.06 0.48 5.04 -4.49 -0.02 0.45 16 26 C -0.14 -1.76 8.92 -39.38 -0.35 -2.11 16 27 C -0.07 -0.96 9.00 -39.61 -0.36 -1.32 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.87 7.45 -51.93 -0.39 0.48 16 31 H 0.34 6.16 7.99 -39.29 -0.31 5.85 16 32 H 0.01 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.12 1.30 8.03 -52.49 -0.42 0.87 16 38 H 0.12 1.18 5.73 -52.49 -0.30 0.88 16 39 H 0.05 0.39 4.88 -51.93 -0.25 0.14 16 40 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 41 H 0.08 0.52 7.08 -51.93 -0.37 0.15 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.36 7.52 -51.93 -0.39 -0.03 16 45 H 0.06 0.35 7.52 -51.93 -0.39 -0.04 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.57 6.94 -51.93 -0.36 0.21 16 49 H 0.08 0.56 6.59 -51.93 -0.34 0.22 16 50 H 0.08 0.66 6.11 -51.93 -0.32 0.34 16 51 H 0.12 1.32 7.10 -52.49 -0.37 0.95 16 52 H 0.13 1.86 7.71 -52.49 -0.40 1.46 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -30.45 392.29 -12.44 -42.89 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -9.16 Total: 2.52 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -3.47 Total: -23.03 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.69 Total: -45.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.45 -12.44 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273301707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.568 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds