Wall clock time and date at job start Tue Mar 31 2020 11:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47236 * 2 1 4 4 N 1.46897 * 109.47497 * 120.00268 * 2 1 3 5 5 C 1.46898 * 111.00067 * 275.00109 * 4 2 1 6 6 C 1.52999 * 109.47012 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46933 * 180.02562 * 6 5 4 8 8 H 1.07994 * 119.99812 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99879 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99972 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99993 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47369 * 59.99756 * 11 9 7 13 13 H 1.48501 * 109.47192 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47116 * 300.00045 * 11 9 7 15 15 C 1.50709 * 109.47323 * 240.00451 * 2 1 3 16 16 C 1.38285 * 119.92498 * 99.99667 * 15 2 1 17 17 C 1.38109 * 120.07228 * 180.02562 * 16 15 2 18 18 C 1.38905 * 119.92440 * 0.28088 * 17 16 15 19 19 N 1.39669 * 120.07624 * 179.72247 * 18 17 16 20 20 C 1.48005 * 110.99800 * 1.34202 * 19 18 17 21 21 C 1.50451 * 112.82610 * 191.34565 * 20 19 18 22 22 C 1.54317 * 108.49846 * 93.72636 * 21 20 19 23 23 C 1.45878 * 112.18094 * 281.46217 * 22 21 20 24 24 C 1.54307 * 112.18800 * 61.12766 * 23 22 21 25 25 C 1.48003 * 111.00312 * 232.62075 * 19 18 17 26 26 C 1.38915 * 119.85085 * 359.44657 * 18 17 16 27 27 C 1.38102 * 119.92533 * 0.57401 * 26 18 17 28 28 H 1.08999 * 109.46868 * 59.99950 * 1 2 3 29 29 H 1.09003 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47305 * 299.99571 * 1 2 3 31 31 H 1.00901 * 111.00280 * 151.03968 * 4 2 1 32 32 H 1.08997 * 109.46938 * 299.99773 * 5 4 2 33 33 H 1.09000 * 109.47047 * 60.00198 * 5 4 2 34 34 H 1.08997 * 109.47365 * 299.99856 * 6 5 4 35 35 H 1.08998 * 109.47264 * 60.00224 * 6 5 4 36 36 H 0.96993 * 120.00058 * 179.97438 * 10 9 7 37 37 H 1.08002 * 119.96361 * 359.97438 * 16 15 2 38 38 H 1.08000 * 120.03224 * 180.02562 * 17 16 15 39 39 H 1.09006 * 108.80590 * 312.20534 * 20 19 18 40 40 H 1.09000 * 108.81579 * 70.48062 * 20 19 18 41 41 H 1.08995 * 109.63055 * 334.02371 * 21 20 19 42 42 H 1.08993 * 109.62803 * 213.42540 * 21 20 19 43 43 H 1.09001 * 108.93741 * 160.76494 * 22 21 20 44 44 H 1.08994 * 108.93984 * 42.15999 * 22 21 20 45 45 H 1.09004 * 108.94074 * 300.42207 * 23 22 21 46 46 H 1.09007 * 108.93488 * 181.82292 * 23 22 21 47 47 H 1.08997 * 109.63346 * 161.76376 * 24 23 22 48 48 H 1.08991 * 109.63463 * 41.15781 * 24 23 22 49 49 H 1.08998 * 108.80856 * 205.69834 * 25 19 18 50 50 H 1.08998 * 108.81134 * 324.08019 * 25 19 18 51 51 H 1.08002 * 120.03931 * 180.25369 * 26 18 17 52 52 H 1.07996 * 119.96315 * 179.70408 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5952 -0.5334 3.5743 7 6 2.6590 0.4052 4.7517 8 1 2.3631 1.4374 4.6361 9 6 3.0942 -0.0542 5.9767 10 7 3.4531 -1.3115 6.1179 11 14 3.1726 1.1090 7.4363 12 1 1.8162 1.6452 7.7154 13 1 3.6703 0.3754 8.6277 14 1 4.0943 2.2313 7.1259 15 6 2.0324 -0.7103 -1.2306 16 6 2.4585 0.0214 -2.3239 17 6 2.9190 -0.6264 -3.4533 18 6 2.9483 -2.0146 -3.4924 19 7 3.4079 -2.6731 -4.6352 20 6 3.8421 -1.7047 -5.6668 21 6 4.0871 -2.3477 -7.0047 22 6 2.7966 -2.2387 -7.8439 23 6 1.8028 -3.2343 -7.4576 24 6 1.3610 -3.0767 -5.9876 25 6 2.4225 -3.6730 -5.1037 26 6 2.5248 -2.7465 -2.3903 27 6 2.0651 -2.0924 -1.2642 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 2.9173 -1.1206 1.0286 32 1 2.7589 1.0461 2.1182 33 1 1.0871 0.6161 2.5526 34 1 1.9185 -1.3567 3.8028 35 1 3.5905 -0.9273 3.3689 36 1 3.7596 -1.6346 6.9795 37 1 2.4304 1.1007 -2.2948 38 1 3.2520 -0.0543 -4.3066 39 1 3.0716 -0.9419 -5.7792 40 1 4.7625 -1.2251 -5.3336 41 1 4.3454 -3.3973 -6.8648 42 1 4.9004 -1.8322 -7.5153 43 1 3.0460 -2.3774 -8.8959 44 1 2.3711 -1.2441 -7.7111 45 1 2.2265 -4.2291 -7.5951 46 1 0.9298 -3.1313 -8.1023 47 1 0.4176 -3.5997 -5.8306 48 1 1.2404 -2.0193 -5.7527 49 1 2.9473 -4.4498 -5.6598 50 1 1.9420 -4.1260 -4.2366 51 1 2.5502 -3.8259 -2.4159 52 1 1.7313 -2.6609 -0.4088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273301707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:24 Heat of formation + Delta-G solvation = 0.412737 kcal Electronic energy + Delta-G solvation = -26197.167193 eV Core-core repulsion = 22773.817127 eV Total energy + Delta-G solvation = -3423.350066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47866 -39.67627 -37.72963 -35.79022 -34.88875 -33.38872 -32.82977 -31.75865 -30.13186 -29.42519 -27.23385 -26.37411 -26.02386 -23.77144 -23.19875 -22.25141 -21.61841 -21.35020 -20.34845 -18.50918 -18.39049 -17.20452 -17.10410 -16.48538 -16.28329 -16.17328 -15.77282 -15.27754 -15.13371 -15.00373 -14.63823 -14.56925 -14.35356 -14.17947 -14.03118 -13.87122 -13.45856 -13.35524 -13.17699 -12.96189 -12.93861 -12.84838 -12.62017 -12.43693 -12.39952 -12.09846 -11.92505 -11.78778 -11.62750 -11.57555 -11.46025 -11.39145 -11.21370 -11.12459 -10.55707 -10.41444 -9.82025 -9.29397 -8.59699 -8.19601 -6.31342 0.43790 0.51884 1.40109 1.43725 1.51641 2.40771 2.61479 2.94163 3.13335 3.35113 3.71052 3.80696 3.81792 3.86800 4.04810 4.10645 4.14332 4.26106 4.32125 4.38620 4.45836 4.46613 4.53175 4.55833 4.61540 4.65917 4.68421 4.79364 4.81018 4.85099 4.89707 4.97901 5.00628 5.07285 5.09816 5.17300 5.19694 5.24164 5.25708 5.34851 5.35796 5.40297 5.43334 5.45149 5.46638 5.67877 5.72024 5.82678 5.87621 6.15762 6.16490 6.31416 6.40300 6.53772 6.85644 7.37602 8.92280 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.002046 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.934870 B =13681.747934 C =13812.697218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.126 3.874 3 H 0.045 0.955 4 N -0.687 5.687 5 C 0.085 3.915 6 C 0.033 3.967 7 C -0.545 4.545 8 H 0.060 0.940 9 C -0.001 4.001 10 N -0.931 5.931 11 Si 0.968 3.032 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.267 1.267 15 C -0.122 4.122 16 C -0.090 4.090 17 C -0.180 4.180 18 C 0.115 3.885 19 N -0.506 5.506 20 C 0.055 3.945 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.144 4.144 25 C 0.059 3.941 26 C -0.152 4.152 27 C -0.081 4.081 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.336 0.664 32 H 0.016 0.984 33 H 0.060 0.940 34 H -0.005 1.005 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.053 0.947 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.131 0.869 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -1.947 -31.980 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.016 3.984 3 H 0.063 0.937 4 N -0.319 5.319 5 C -0.043 4.043 6 C -0.004 4.004 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.199 4.199 10 N -0.571 5.571 11 Si 0.792 3.208 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.200 4.200 18 C 0.017 3.983 19 N -0.221 5.221 20 C -0.070 4.070 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.183 4.183 25 C -0.065 4.065 26 C -0.173 4.173 27 C -0.100 4.100 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.013 0.987 35 H 0.007 0.993 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.072 0.928 49 H 0.106 0.894 50 H 0.091 0.909 51 H 0.148 0.852 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.958 -2.619 -31.676 31.922 hybrid contribution 0.392 1.178 0.888 1.527 sum -2.566 -1.441 -30.788 30.928 Atomic orbital electron populations 1.21717 0.93375 1.02061 1.01332 1.20419 0.96329 0.94869 0.86740 0.93732 1.60659 1.33256 1.33662 1.04280 1.21811 0.99125 0.93165 0.90233 1.18904 0.94260 0.95091 0.92190 1.21583 1.44134 0.96980 0.95658 0.92132 1.26006 0.94790 0.96903 1.02210 1.70106 1.45144 1.16388 1.25478 0.85458 0.78958 0.78589 0.77761 1.19097 1.20780 1.19161 1.19844 1.02666 0.94094 0.95766 1.21038 0.97235 1.00162 0.92492 1.21370 1.05318 0.93607 0.99739 1.19012 0.94970 0.92030 0.92303 1.59011 1.39108 1.18198 1.05768 1.22063 1.00259 0.93544 0.91165 1.21453 0.98408 1.02126 0.93634 1.20606 0.95240 0.99603 1.00321 1.20557 0.99296 1.00227 0.95269 1.21870 0.99139 1.01138 0.96115 1.22131 0.91262 0.93699 0.99447 1.20882 1.03550 1.00101 0.92738 1.20944 0.97497 0.93999 0.97573 0.91092 0.92644 0.93349 0.84564 0.96572 0.92164 0.98671 0.99309 0.92748 0.85066 0.84130 0.93136 0.90932 0.90931 0.89580 0.90810 0.92497 0.91335 0.91554 0.90500 0.92808 0.89430 0.90907 0.85156 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.39 71.98 0.68 -2.83 16 2 C 0.13 3.79 2.81 44.17 0.12 3.91 16 3 H 0.04 1.35 7.66 -2.39 -0.02 1.33 16 4 N -0.69 -25.59 5.69 -495.47 -2.82 -28.41 16 5 C 0.09 3.74 5.42 86.30 0.47 4.20 16 6 C 0.03 1.82 5.23 29.85 0.16 1.97 16 7 C -0.55 -31.86 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 10 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 11 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C -0.12 -3.32 4.72 -19.84 -0.09 -3.41 16 16 C -0.09 -2.12 9.66 22.25 0.21 -1.91 16 17 C -0.18 -3.84 8.84 22.40 0.20 -3.64 16 18 C 0.12 2.54 5.52 38.21 0.21 2.75 16 19 N -0.51 -9.16 4.74 -699.05 -3.31 -12.47 16 20 C 0.06 0.79 3.77 85.27 0.32 1.11 16 21 C -0.12 -1.23 5.63 30.22 0.17 -1.06 16 22 C -0.12 -1.09 5.30 28.86 0.15 -0.94 16 23 C -0.12 -1.10 5.30 28.85 0.15 -0.95 16 24 C -0.14 -1.83 5.59 30.21 0.17 -1.66 16 25 C 0.06 0.87 5.04 85.27 0.43 1.30 16 26 C -0.15 -3.67 8.92 22.40 0.20 -3.47 16 27 C -0.08 -2.21 9.00 22.25 0.20 -2.01 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.41 7.45 -2.39 -0.02 1.40 16 31 H 0.34 12.70 7.99 -89.69 -0.72 11.99 16 32 H 0.02 0.70 8.05 -2.39 -0.02 0.68 16 33 H 0.06 2.60 7.44 -2.39 -0.02 2.59 16 34 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.13 2.66 8.03 -2.91 -0.02 2.64 16 38 H 0.14 2.43 5.73 -2.91 -0.02 2.41 16 39 H 0.05 0.72 4.88 -2.38 -0.01 0.71 16 40 H 0.07 1.09 8.03 -2.39 -0.02 1.07 16 41 H 0.07 0.83 7.08 -2.39 -0.02 0.81 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.57 7.52 -2.39 -0.02 0.55 16 45 H 0.07 0.59 7.52 -2.39 -0.02 0.58 16 46 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.05 0.84 6.94 -2.39 -0.02 0.82 16 49 H 0.09 1.12 6.59 -2.39 -0.02 1.11 16 50 H 0.07 1.16 6.11 -2.39 -0.01 1.14 16 51 H 0.13 2.82 7.10 -2.91 -0.02 2.80 16 52 H 0.12 3.55 7.71 -2.91 -0.02 3.52 16 Total: -1.00 -65.68 392.29 0.79 -64.89 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.17 Total: 24.48 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 4.45 Total: -37.85 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -5.85 Total: -98.55 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.68 0.79 -64.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273301707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.300 kcal (2) G-P(sol) polarization free energy of solvation -65.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds