Wall clock time and date at job start Tue Mar 31 2020 11:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 H 1.09004 * 109.46969 * 303.61252 * 3 2 1 5 5 C 1.50706 * 109.47067 * 183.61540 * 3 2 1 6 6 H 1.08004 * 119.99867 * 239.99999 * 5 3 2 7 7 C 1.37872 * 119.99987 * 59.99556 * 5 3 2 8 8 N 1.31516 * 120.00411 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99941 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47234 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47034 * 120.00265 * 9 7 5 12 12 H 1.48498 * 109.47397 * 239.99914 * 9 7 5 13 13 N 1.46899 * 109.47308 * 63.61381 * 3 2 1 14 14 C 1.46897 * 110.99766 * 209.69247 * 13 3 2 15 15 H 1.08998 * 109.52569 * 30.57750 * 14 13 3 16 16 C 1.53123 * 109.52449 * 270.44708 * 14 13 3 17 17 C 1.53040 * 109.27840 * 182.38057 * 16 14 13 18 18 N 1.46843 * 109.51563 * 59.18263 * 17 16 14 19 19 C 1.46905 * 110.99992 * 174.15586 * 18 17 16 20 20 C 1.50696 * 109.47049 * 176.45677 * 19 18 17 21 21 C 1.38237 * 119.99996 * 263.65573 * 20 19 18 22 22 C 1.38232 * 119.99970 * 179.80944 * 21 20 19 23 23 C 1.38244 * 120.00173 * 0.42267 * 22 21 20 24 24 C 1.38233 * 119.99502 * 359.80868 * 23 22 21 25 25 C 1.38232 * 120.00071 * 83.92885 * 20 19 18 26 26 C 1.46841 * 111.20156 * 298.24569 * 18 17 16 27 27 H 1.09000 * 109.45787 * 181.76261 * 26 18 17 28 28 C 1.53009 * 109.47132 * 301.74155 * 26 18 17 29 29 C 1.53036 * 109.51603 * 61.75397 * 26 18 17 30 30 H 1.08994 * 109.47582 * 184.95343 * 1 2 3 31 31 H 1.08997 * 109.47295 * 304.96176 * 1 2 3 32 32 H 1.09009 * 109.46755 * 64.95403 * 1 2 3 33 33 H 1.09002 * 109.47184 * 239.99290 * 2 1 3 34 34 H 1.09010 * 109.46916 * 119.99856 * 2 1 3 35 35 H 0.96998 * 120.00502 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00268 * 85.74095 * 13 3 2 37 37 H 1.08998 * 109.50284 * 62.44211 * 16 14 13 38 38 H 1.08996 * 109.53563 * 302.34116 * 16 14 13 39 39 H 1.08996 * 109.46208 * 179.19667 * 17 16 14 40 40 H 1.09008 * 109.46003 * 299.17268 * 17 16 14 41 41 H 1.08999 * 109.46675 * 296.45706 * 19 18 17 42 42 H 1.08999 * 109.46884 * 56.45434 * 19 18 17 43 43 H 1.07995 * 119.99806 * 0.02562 * 21 20 19 44 44 H 1.07999 * 120.00172 * 180.20793 * 22 21 20 45 45 H 1.07995 * 120.00209 * 179.78894 * 23 22 21 46 46 H 1.08003 * 119.99738 * 179.97438 * 24 23 22 47 47 H 1.08003 * 120.00269 * 359.97438 * 25 20 19 48 48 H 1.08995 * 109.47145 * 185.06797 * 28 26 18 49 49 H 1.09005 * 109.46684 * 305.06629 * 28 26 18 50 50 H 1.08995 * 109.46666 * 65.05893 * 28 26 18 51 51 H 1.09000 * 109.50042 * 180.87520 * 29 26 18 52 52 H 1.09001 * 109.53456 * 60.78044 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6248 1.9746 -0.8559 5 6 3.5444 1.4433 -0.0896 6 1 4.1320 1.8942 0.6966 7 6 4.1707 0.8685 -1.1751 8 7 3.4553 0.3199 -2.1326 9 14 6.0354 0.8690 -1.2858 10 1 6.6021 1.5427 -0.0900 11 1 6.5281 -0.5306 -1.3448 12 1 6.4585 1.5946 -2.5104 13 7 1.6230 2.1093 1.2407 14 6 1.4407 3.5513 1.0276 15 1 1.1213 3.7303 0.0009 16 6 2.7634 4.2781 1.2862 17 6 2.5527 5.7849 1.1206 18 7 1.5281 6.2439 2.0671 19 6 1.3979 7.7067 2.0336 20 6 0.2808 8.1328 2.9508 21 6 -0.9825 8.3653 2.4398 22 6 -2.0082 8.7523 3.2819 23 6 -1.7686 8.9152 4.6336 24 6 -0.5043 8.6874 5.1438 25 6 0.5205 8.2966 4.3023 26 6 0.2367 5.5947 1.8078 27 1 -0.5088 5.9782 2.5045 28 6 -0.2051 5.8927 0.3735 29 6 0.3782 4.0823 1.9939 30 1 -0.3634 -1.0237 0.0887 31 1 -0.3634 0.5889 0.8422 32 1 -0.3633 0.4351 -0.9311 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 3.8959 -0.0842 -2.8965 36 1 2.2820 1.9343 1.9845 37 1 3.5127 3.9349 0.5729 38 1 3.1028 4.0674 2.3003 39 1 3.4892 6.3064 1.3181 40 1 2.2270 5.9963 0.1020 41 1 2.3319 8.1622 2.3626 42 1 1.1755 8.0285 1.0162 43 1 -1.1688 8.2412 1.3834 44 1 -2.9959 8.9307 2.8832 45 1 -2.5692 9.2209 5.2909 46 1 -0.3170 8.8151 6.1997 47 1 1.5084 8.1188 4.7010 48 1 -1.2035 5.4876 0.2093 49 1 -0.2198 6.9710 0.2146 50 1 0.4936 5.4321 -0.3249 51 1 -0.5766 3.5993 1.7862 52 1 0.6792 3.8679 3.0193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273875448.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:21 Heat of formation + Delta-G solvation = 5.705042 kcal Electronic energy + Delta-G solvation = -27605.579854 eV Core-core repulsion = 24182.459280 eV Total energy + Delta-G solvation = -3423.120574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18872 -39.67444 -37.80655 -35.22512 -33.66831 -32.88717 -32.43586 -31.67495 -30.41088 -28.70557 -27.62898 -26.28181 -24.58998 -23.78831 -23.34290 -22.94744 -21.75108 -21.41281 -19.53611 -18.42041 -17.62824 -17.30241 -16.85075 -16.44910 -16.15254 -15.85157 -15.59964 -15.28015 -14.96927 -14.78863 -14.64205 -14.41820 -14.21690 -13.75896 -13.68172 -13.48955 -13.42446 -13.21472 -13.07106 -12.97005 -12.95331 -12.81154 -12.60820 -12.46243 -12.19116 -12.06317 -11.89356 -11.74575 -11.68173 -11.57536 -11.47928 -11.38044 -10.90269 -10.73453 -10.41864 -9.73346 -9.63500 -9.13638 -8.92890 -8.02054 -6.22497 0.48239 0.58109 1.36682 1.40443 1.49566 2.41396 2.79880 3.17410 3.22541 3.65470 3.81324 3.90303 4.01733 4.11256 4.20212 4.23651 4.28970 4.33701 4.42881 4.48065 4.55752 4.61192 4.62258 4.68162 4.71131 4.76665 4.79883 4.84521 4.87369 4.90643 4.98144 5.06148 5.14622 5.18238 5.20396 5.23183 5.25705 5.27280 5.43875 5.44944 5.52937 5.58857 5.63906 5.68229 5.69729 5.78265 5.81489 6.13770 6.15984 6.22033 6.22943 6.26432 6.48144 6.89048 7.08902 7.48351 8.94584 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.003154 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.755258 B = 8876.388649 C = 9614.574005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.227 3.773 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.678 5.678 14 C 0.102 3.898 15 H 0.045 0.955 16 C -0.132 4.132 17 C 0.064 3.936 18 N -0.526 5.526 19 C 0.092 3.908 20 C -0.087 4.087 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.111 4.111 26 C 0.090 3.910 27 H 0.088 0.912 28 C -0.184 4.184 29 C -0.087 4.087 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.026 0.974 35 H 0.259 0.741 36 H 0.329 0.671 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.123 0.877 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.125 0.875 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.045 0.955 51 H 0.063 0.937 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 17.775 11.099 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.118 3.882 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.306 5.306 14 C -0.009 4.009 15 H 0.063 0.937 16 C -0.172 4.172 17 C -0.064 4.064 18 N -0.250 5.250 19 C -0.035 4.035 20 C -0.087 4.087 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.130 4.130 26 C -0.019 4.019 27 H 0.106 0.894 28 C -0.242 4.242 29 C -0.126 4.126 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.141 0.859 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.143 0.857 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.064 0.936 51 H 0.081 0.919 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.524 17.376 11.300 22.811 hybrid contribution 1.933 0.058 -1.538 2.470 sum -7.592 17.434 9.763 21.375 Atomic orbital electron populations 1.21566 0.96608 0.99831 1.00281 1.21374 0.94259 0.98756 0.99809 1.18910 0.91576 0.91181 0.86506 0.98837 1.22208 0.93764 1.36716 1.05693 0.92677 1.25638 1.01739 0.95066 0.95660 1.70021 1.36224 1.38923 1.10143 0.85706 0.81670 0.77586 0.77855 1.19271 1.20920 1.21037 1.60848 1.52139 1.08984 1.08639 1.21467 0.94183 0.87637 0.97576 0.93695 1.22201 0.98701 0.94941 1.01322 1.21968 0.95395 0.95315 0.93732 1.62260 1.06821 1.05130 1.50785 1.21081 0.97563 0.87743 0.97087 1.19774 0.94657 0.99598 0.94685 1.21277 0.92764 0.99922 1.00321 1.21387 0.99559 0.99711 0.94025 1.21453 0.97488 0.99881 0.95735 1.21423 0.93211 0.99494 1.00556 1.21189 1.00013 0.98820 0.92953 1.21621 0.90887 0.93894 0.95469 0.89357 1.22488 1.01923 1.01671 0.98127 1.21474 0.98343 0.93577 0.99159 0.93753 0.92210 0.95349 0.92335 0.95492 0.93131 0.85422 0.92838 0.92029 0.90298 0.95083 0.89420 0.93794 0.85899 0.84524 0.84250 0.84495 0.85712 0.91663 0.91630 0.93645 0.91862 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.85 71.98 0.71 -4.44 16 2 C -0.10 -5.01 5.44 30.59 0.17 -4.85 16 3 C 0.23 11.22 2.01 44.17 0.09 11.31 16 4 H -0.01 -0.35 7.29 -2.38 -0.02 -0.37 16 5 C -0.54 -28.89 7.35 25.60 0.19 -28.70 16 6 H 0.06 2.88 6.96 -2.91 -0.02 2.86 16 7 C 0.02 1.00 5.30 84.65 0.45 1.45 16 8 N -0.91 -52.29 11.30 21.45 0.24 -52.05 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.68 -28.03 5.38 -472.89 -2.54 -30.58 16 14 C 0.10 3.70 2.25 45.00 0.10 3.80 16 15 H 0.04 1.84 5.60 -2.39 -0.01 1.83 16 16 C -0.13 -4.58 5.05 30.65 0.15 -4.43 16 17 C 0.06 1.82 5.17 86.33 0.45 2.27 16 18 N -0.53 -13.26 4.70 -875.64 -4.12 -17.38 16 19 C 0.09 1.93 4.80 85.55 0.41 2.34 16 20 C -0.09 -1.74 4.15 -19.87 -0.08 -1.82 16 21 C -0.12 -2.31 7.98 22.27 0.18 -2.13 16 22 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 23 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 24 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 25 C -0.11 -2.13 9.73 22.27 0.22 -1.91 16 26 C 0.09 2.31 2.42 44.94 0.11 2.42 16 27 H 0.09 2.21 5.87 -2.39 -0.01 2.20 16 28 C -0.18 -4.54 7.95 71.99 0.57 -3.97 16 29 C -0.09 -2.64 5.22 30.65 0.16 -2.48 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 2.34 7.57 -2.39 -0.02 2.32 16 32 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.06 3.21 5.98 -2.39 -0.01 3.19 16 34 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.33 13.65 7.95 -89.69 -0.71 12.94 16 37 H 0.05 2.18 6.49 -2.39 -0.02 2.16 16 38 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 39 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 40 H 0.03 0.91 6.31 -2.38 -0.02 0.90 16 41 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 42 H 0.04 0.90 6.64 -2.39 -0.02 0.89 16 43 H 0.12 2.12 6.44 -2.91 -0.02 2.10 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 48 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.06 1.40 4.89 -2.38 -0.01 1.39 16 50 H 0.04 1.33 4.83 -2.39 -0.01 1.31 16 51 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -57.98 383.58 0.33 -57.65 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.18 Total: 33.67 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.54 Total: -36.68 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -6.42 Total: -100.01 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -57.98 0.33 -57.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273875448.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.358 kcal (2) G-P(sol) polarization free energy of solvation -57.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds