Wall clock time and date at job start Tue Mar 31 2020 11:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47358 * 2 1 4 4 H 1.09000 * 109.46812 * 303.07329 * 3 2 1 5 5 C 1.50693 * 109.47000 * 183.07544 * 3 2 1 6 6 H 1.08002 * 120.00092 * 239.99233 * 5 3 2 7 7 C 1.37883 * 120.00160 * 60.00110 * 5 3 2 8 8 N 1.31506 * 120.00030 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47401 * 59.99405 * 9 7 5 11 11 H 1.48498 * 109.47123 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46801 * 299.99730 * 9 7 5 13 13 N 1.46896 * 109.47259 * 63.07253 * 3 2 1 14 14 C 1.46897 * 111.00073 * 204.63034 * 13 3 2 15 15 H 1.09001 * 109.52326 * 325.59895 * 14 13 3 16 16 C 1.53118 * 109.52361 * 85.72866 * 14 13 3 17 17 C 1.53031 * 109.27595 * 177.55977 * 16 14 13 18 18 N 1.46850 * 109.52502 * 300.81980 * 17 16 14 19 19 C 1.46904 * 110.99856 * 185.83976 * 18 17 16 20 20 C 1.50705 * 109.46902 * 64.95995 * 19 18 17 21 21 C 1.38224 * 119.99996 * 264.33139 * 20 19 18 22 22 C 1.38234 * 120.00252 * 179.81323 * 21 20 19 23 23 C 1.38238 * 119.99877 * 0.39839 * 22 21 20 24 24 C 1.38236 * 119.99734 * 359.85542 * 23 22 21 25 25 C 1.38232 * 120.00133 * 359.95943 * 24 23 22 26 26 C 1.46845 * 111.19723 * 61.74383 * 18 17 16 27 27 H 1.09004 * 109.46255 * 58.27724 * 26 18 17 28 28 C 1.53004 * 109.46002 * 178.25036 * 26 18 17 29 29 C 1.53036 * 109.52465 * 298.26027 * 26 18 17 30 30 H 1.09008 * 109.47244 * 294.87106 * 1 2 3 31 31 H 1.09000 * 109.47636 * 174.86718 * 1 2 3 32 32 H 1.09006 * 109.47217 * 54.86803 * 1 2 3 33 33 H 1.09007 * 109.46886 * 119.99849 * 2 1 3 34 34 H 1.08999 * 109.47093 * 239.99386 * 2 1 3 35 35 H 0.97006 * 120.00165 * 180.02562 * 8 7 5 36 36 H 1.00901 * 111.00067 * 80.67579 * 13 3 2 37 37 H 1.09000 * 109.50273 * 297.50029 * 16 14 13 38 38 H 1.08995 * 109.50266 * 57.61885 * 16 14 13 39 39 H 1.08999 * 109.46623 * 60.83608 * 17 16 14 40 40 H 1.09003 * 109.46116 * 180.80599 * 17 16 14 41 41 H 1.09002 * 109.46694 * 184.95832 * 19 18 17 42 42 H 1.08999 * 109.47542 * 304.95938 * 19 18 17 43 43 H 1.08007 * 120.00232 * 359.97438 * 21 20 19 44 44 H 1.08000 * 120.00711 * 180.22827 * 22 21 20 45 45 H 1.07995 * 120.00160 * 179.83909 * 23 22 21 46 46 H 1.08003 * 120.00244 * 179.97438 * 24 23 22 47 47 H 1.08000 * 120.00020 * 180.02562 * 25 24 23 48 48 H 1.08995 * 109.46766 * 52.65758 * 28 26 18 49 49 H 1.09000 * 109.46692 * 172.65140 * 28 26 18 50 50 H 1.08999 * 109.47330 * 292.65472 * 28 26 18 51 51 H 1.09003 * 109.49875 * 299.24105 * 29 26 18 52 52 H 1.08993 * 109.50239 * 179.12229 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6324 1.9720 -0.8612 5 6 3.5450 1.4431 -0.0762 6 1 4.1255 1.8965 0.7136 7 6 4.1809 0.8649 -1.1544 8 7 3.4741 0.3125 -2.1160 9 14 6.0466 0.8650 -1.2485 10 1 6.6015 0.1434 -0.0754 11 1 6.4793 0.1866 -2.4966 12 1 6.5421 2.2650 -1.2482 13 7 1.6119 2.1133 1.2348 14 6 1.5473 3.5689 1.0480 15 1 2.3356 3.8837 0.3641 16 6 0.1831 3.9501 0.4667 17 6 0.0991 5.4721 0.3313 18 7 0.2802 6.0929 1.6498 19 6 0.0683 7.5449 1.5816 20 6 -1.3677 7.8266 1.2214 21 6 -1.7170 8.0596 -0.0955 22 6 -3.0348 8.3142 -0.4265 23 6 -4.0020 8.3438 0.5607 24 6 -3.6519 8.1160 1.8784 25 6 -2.3347 7.8577 2.2088 26 6 1.6022 5.7796 2.2071 27 1 2.3763 6.1264 1.5226 28 6 1.7650 6.4798 3.5577 29 6 1.7311 4.2667 2.3984 30 1 -0.3634 0.4322 0.9324 31 1 -0.3634 -1.0235 -0.0919 32 1 -0.3634 0.5914 -0.8405 33 1 1.8932 -0.5138 0.8901 34 1 1.8932 -0.5139 -0.8899 35 1 3.9215 -0.0946 -2.8744 36 1 2.2182 1.8741 2.0051 37 1 0.0642 3.4904 -0.5144 38 1 -0.6065 3.5998 1.1314 39 1 0.8803 5.8204 -0.3444 40 1 -0.8766 5.7479 -0.0689 41 1 0.2941 7.9909 2.5503 42 1 0.7237 7.9726 0.8230 43 1 -0.9607 8.0402 -0.8664 44 1 -3.3083 8.4926 -1.4559 45 1 -5.0311 8.5453 0.3025 46 1 -4.4074 8.1396 2.6498 47 1 -2.0612 7.6793 3.2383 48 1 0.9182 6.2344 4.1986 49 1 2.6880 6.1455 4.0313 50 1 1.8047 7.5584 3.4053 51 1 0.9658 3.9214 3.0936 52 1 2.7181 4.0332 2.7975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273875451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:25 Heat of formation + Delta-G solvation = 14.029701 kcal Electronic energy + Delta-G solvation = -27304.821027 eV Core-core repulsion = 23882.061437 eV Total energy + Delta-G solvation = -3422.759590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86905 -38.62106 -36.18635 -33.73783 -32.53375 -31.70410 -31.06407 -30.91289 -29.22732 -27.00180 -26.16340 -25.14007 -23.00454 -22.71015 -22.32378 -21.22680 -20.34366 -19.36173 -19.13121 -16.87095 -16.56720 -15.81293 -15.58161 -15.32995 -14.85563 -14.75753 -14.30567 -14.08630 -13.84399 -13.48901 -13.40781 -13.22388 -12.83386 -12.68298 -12.57361 -12.34895 -11.92744 -11.90412 -11.77921 -11.47239 -11.30254 -11.19525 -11.12272 -11.06328 -10.95702 -10.69116 -10.65300 -10.54843 -10.23180 -10.10660 -9.79555 -9.52167 -9.36209 -8.99178 -8.96039 -8.82515 -8.35514 -8.15722 -7.19443 -5.97903 -4.10925 1.25848 1.33810 3.27367 3.32866 3.35012 3.61752 4.15417 4.39686 4.69413 4.76415 4.91912 4.95073 5.02326 5.08388 5.19290 5.25661 5.32526 5.34449 5.42931 5.49089 5.58454 5.62510 5.70065 5.78442 5.84781 5.90415 5.94464 5.97575 6.05032 6.18783 6.27461 6.30630 6.36263 6.42206 6.42917 6.45055 6.54104 6.55225 6.57149 6.72986 6.77924 6.91968 6.97592 7.17739 7.22382 7.25804 7.30075 7.50381 7.64083 7.80347 8.12966 8.20971 8.38804 8.72494 9.03111 9.56539 11.01807 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.003138 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.172862 B = 8920.252859 C = 9411.598754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.684 5.684 14 C 0.093 3.907 15 H 0.041 0.959 16 C -0.098 4.098 17 C 0.056 3.944 18 N -0.523 5.523 19 C 0.086 3.914 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.097 4.097 26 C 0.085 3.915 27 H 0.038 0.962 28 C -0.146 4.146 29 C -0.108 4.108 30 H 0.047 0.953 31 H 0.022 0.978 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.088 0.912 35 H 0.261 0.739 36 H 0.326 0.674 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.051 0.949 51 H 0.073 0.927 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 15.971 7.425 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.313 5.313 14 C -0.017 4.017 15 H 0.059 0.941 16 C -0.137 4.137 17 C -0.072 4.072 18 N -0.249 5.249 19 C -0.041 4.041 20 C -0.072 4.072 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.116 4.116 26 C -0.024 4.024 27 H 0.056 0.944 28 C -0.204 4.204 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.092 0.908 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.492 15.554 7.426 20.716 hybrid contribution 2.674 0.479 -0.856 2.849 sum -8.818 16.033 6.570 19.442 Atomic orbital electron populations 1.21678 0.98976 0.98112 1.00427 1.21490 0.92068 0.99335 1.01549 1.19147 0.92194 0.90982 0.86782 0.95067 1.21851 0.92810 1.37608 1.06126 0.93072 1.24926 0.97867 0.95066 0.95625 1.69867 1.34988 1.37694 1.09766 0.86748 0.86291 0.78103 0.77369 1.20299 1.21247 1.20491 1.60910 1.56397 1.05067 1.08932 1.21333 0.95832 0.89856 0.94711 0.94052 1.21529 0.98403 0.92350 1.01378 1.22173 1.00468 0.95934 0.88642 1.62028 1.29745 1.08212 1.24881 1.21134 0.91999 0.89587 1.01366 1.19780 0.95542 0.98604 0.93264 1.21101 0.96447 0.99930 0.95837 1.21105 0.93149 1.00477 0.99263 1.21119 0.99204 1.00717 0.93238 1.21139 0.96300 1.00278 0.96396 1.20998 0.92559 0.98688 0.99329 1.21590 0.88887 0.96451 0.95453 0.94381 1.21922 1.02177 0.99455 0.96836 1.21788 1.01486 0.92702 0.98684 0.93370 0.95836 0.94559 0.95193 0.89368 0.92875 0.85700 0.91771 0.91220 0.95375 0.90828 0.89542 0.94408 0.86404 0.86286 0.86416 0.86288 0.86044 0.91676 0.92134 0.93034 0.90821 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.72 37.15 0.36 -2.45 16 2 C -0.11 -2.55 5.44 -26.73 -0.15 -2.69 16 3 C 0.22 5.31 1.81 -68.87 -0.12 5.19 16 4 H 0.03 0.86 7.19 -51.93 -0.37 0.48 16 5 C -0.54 -14.60 8.25 -34.44 -0.28 -14.89 16 6 H 0.05 1.36 7.75 -52.49 -0.41 0.96 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -25.02 11.30 55.43 0.63 -24.39 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -14.16 5.52 -100.83 -0.56 -14.72 16 14 C 0.09 1.73 2.36 -67.59 -0.16 1.57 16 15 H 0.04 0.89 7.62 -51.93 -0.40 0.49 16 16 C -0.10 -1.69 5.58 -26.65 -0.15 -1.84 16 17 C 0.06 0.82 5.21 -3.83 -0.02 0.80 16 18 N -0.52 -6.93 4.49 -228.11 -1.02 -7.95 16 19 C 0.09 0.97 4.81 -4.97 -0.02 0.95 16 20 C -0.07 -0.80 4.68 -104.62 -0.49 -1.29 16 21 C -0.11 -1.25 8.23 -39.59 -0.33 -1.57 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 25 C -0.10 -1.03 9.72 -39.58 -0.38 -1.42 16 26 C 0.08 1.13 2.44 -67.72 -0.17 0.96 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 C -0.15 -1.57 8.53 37.16 0.32 -1.25 16 29 C -0.11 -1.66 4.63 -26.65 -0.12 -1.78 16 30 H 0.05 0.96 7.85 -51.92 -0.41 0.56 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 2.37 5.99 -51.93 -0.31 2.06 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.33 6.73 8.06 -39.29 -0.32 6.41 16 37 H 0.06 1.21 7.51 -51.93 -0.39 0.82 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.05 6.06 -51.93 -0.31 0.74 16 41 H 0.09 0.87 5.84 -51.93 -0.30 0.57 16 42 H 0.04 0.43 8.04 -51.93 -0.42 0.01 16 43 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.05 0.49 6.58 -51.93 -0.34 0.14 16 51 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -27.76 397.51 -12.45 -40.21 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -9.45 Total: 7.48 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -3.01 Total: -22.75 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.95 Total: -47.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.76 -12.45 -40.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273875451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.236 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds