Wall clock time and date at job start Tue Mar 31 2020 11:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47358 * 2 1 4 4 H 1.09000 * 109.46812 * 303.07329 * 3 2 1 5 5 C 1.50693 * 109.47000 * 183.07544 * 3 2 1 6 6 H 1.08002 * 120.00092 * 239.99233 * 5 3 2 7 7 C 1.37883 * 120.00160 * 60.00110 * 5 3 2 8 8 N 1.31506 * 120.00030 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47401 * 59.99405 * 9 7 5 11 11 H 1.48498 * 109.47123 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46801 * 299.99730 * 9 7 5 13 13 N 1.46896 * 109.47259 * 63.07253 * 3 2 1 14 14 C 1.46897 * 111.00073 * 204.63034 * 13 3 2 15 15 H 1.09001 * 109.52326 * 325.59895 * 14 13 3 16 16 C 1.53118 * 109.52361 * 85.72866 * 14 13 3 17 17 C 1.53031 * 109.27595 * 177.55977 * 16 14 13 18 18 N 1.46850 * 109.52502 * 300.81980 * 17 16 14 19 19 C 1.46904 * 110.99856 * 185.83976 * 18 17 16 20 20 C 1.50705 * 109.46902 * 64.95995 * 19 18 17 21 21 C 1.38224 * 119.99996 * 264.33139 * 20 19 18 22 22 C 1.38234 * 120.00252 * 179.81323 * 21 20 19 23 23 C 1.38238 * 119.99877 * 0.39839 * 22 21 20 24 24 C 1.38236 * 119.99734 * 359.85542 * 23 22 21 25 25 C 1.38232 * 120.00133 * 359.95943 * 24 23 22 26 26 C 1.46845 * 111.19723 * 61.74383 * 18 17 16 27 27 H 1.09004 * 109.46255 * 58.27724 * 26 18 17 28 28 C 1.53004 * 109.46002 * 178.25036 * 26 18 17 29 29 C 1.53036 * 109.52465 * 298.26027 * 26 18 17 30 30 H 1.09008 * 109.47244 * 294.87106 * 1 2 3 31 31 H 1.09000 * 109.47636 * 174.86718 * 1 2 3 32 32 H 1.09006 * 109.47217 * 54.86803 * 1 2 3 33 33 H 1.09007 * 109.46886 * 119.99849 * 2 1 3 34 34 H 1.08999 * 109.47093 * 239.99386 * 2 1 3 35 35 H 0.97006 * 120.00165 * 180.02562 * 8 7 5 36 36 H 1.00901 * 111.00067 * 80.67579 * 13 3 2 37 37 H 1.09000 * 109.50273 * 297.50029 * 16 14 13 38 38 H 1.08995 * 109.50266 * 57.61885 * 16 14 13 39 39 H 1.08999 * 109.46623 * 60.83608 * 17 16 14 40 40 H 1.09003 * 109.46116 * 180.80599 * 17 16 14 41 41 H 1.09002 * 109.46694 * 184.95832 * 19 18 17 42 42 H 1.08999 * 109.47542 * 304.95938 * 19 18 17 43 43 H 1.08007 * 120.00232 * 359.97438 * 21 20 19 44 44 H 1.08000 * 120.00711 * 180.22827 * 22 21 20 45 45 H 1.07995 * 120.00160 * 179.83909 * 23 22 21 46 46 H 1.08003 * 120.00244 * 179.97438 * 24 23 22 47 47 H 1.08000 * 120.00020 * 180.02562 * 25 24 23 48 48 H 1.08995 * 109.46766 * 52.65758 * 28 26 18 49 49 H 1.09000 * 109.46692 * 172.65140 * 28 26 18 50 50 H 1.08999 * 109.47330 * 292.65472 * 28 26 18 51 51 H 1.09003 * 109.49875 * 299.24105 * 29 26 18 52 52 H 1.08993 * 109.50239 * 179.12229 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6324 1.9720 -0.8612 5 6 3.5450 1.4431 -0.0762 6 1 4.1255 1.8965 0.7136 7 6 4.1809 0.8649 -1.1544 8 7 3.4741 0.3125 -2.1160 9 14 6.0466 0.8650 -1.2485 10 1 6.6015 0.1434 -0.0754 11 1 6.4793 0.1866 -2.4966 12 1 6.5421 2.2650 -1.2482 13 7 1.6119 2.1133 1.2348 14 6 1.5473 3.5689 1.0480 15 1 2.3356 3.8837 0.3641 16 6 0.1831 3.9501 0.4667 17 6 0.0991 5.4721 0.3313 18 7 0.2802 6.0929 1.6498 19 6 0.0683 7.5449 1.5816 20 6 -1.3677 7.8266 1.2214 21 6 -1.7170 8.0596 -0.0955 22 6 -3.0348 8.3142 -0.4265 23 6 -4.0020 8.3438 0.5607 24 6 -3.6519 8.1160 1.8784 25 6 -2.3347 7.8577 2.2088 26 6 1.6022 5.7796 2.2071 27 1 2.3763 6.1264 1.5226 28 6 1.7650 6.4798 3.5577 29 6 1.7311 4.2667 2.3984 30 1 -0.3634 0.4322 0.9324 31 1 -0.3634 -1.0235 -0.0919 32 1 -0.3634 0.5914 -0.8405 33 1 1.8932 -0.5138 0.8901 34 1 1.8932 -0.5139 -0.8899 35 1 3.9215 -0.0946 -2.8744 36 1 2.2182 1.8741 2.0051 37 1 0.0642 3.4904 -0.5144 38 1 -0.6065 3.5998 1.1314 39 1 0.8803 5.8204 -0.3444 40 1 -0.8766 5.7479 -0.0689 41 1 0.2941 7.9909 2.5503 42 1 0.7237 7.9726 0.8230 43 1 -0.9607 8.0402 -0.8664 44 1 -3.3083 8.4926 -1.4559 45 1 -5.0311 8.5453 0.3025 46 1 -4.4074 8.1396 2.6498 47 1 -2.0612 7.6793 3.2383 48 1 0.9182 6.2344 4.1986 49 1 2.6880 6.1455 4.0313 50 1 1.8047 7.5584 3.4053 51 1 0.9658 3.9214 3.0936 52 1 2.7181 4.0332 2.7975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273875451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:24 Heat of formation + Delta-G solvation = -0.140323 kcal Electronic energy + Delta-G solvation = -27305.435485 eV Core-core repulsion = 23882.061437 eV Total energy + Delta-G solvation = -3423.374048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88293 -39.64596 -37.83507 -35.25803 -33.80462 -33.38634 -32.36973 -31.69393 -30.61508 -28.42169 -27.61295 -26.40259 -24.60197 -24.02362 -23.25808 -22.24751 -21.54628 -21.15425 -20.50755 -18.63949 -17.62576 -16.97149 -16.82427 -16.52711 -16.18148 -16.03798 -15.66834 -15.43066 -15.06489 -14.88030 -14.64090 -14.57400 -14.21413 -13.76742 -13.61847 -13.45649 -13.32161 -13.21746 -13.05765 -13.01824 -12.79526 -12.70967 -12.65693 -12.54368 -12.21878 -12.02801 -11.87745 -11.81679 -11.73580 -11.66344 -11.50617 -11.25479 -11.09940 -10.82905 -10.45892 -9.74377 -9.63087 -9.24019 -9.02838 -8.05656 -6.28233 0.48081 0.57579 1.36634 1.37374 1.44879 2.38398 2.74872 3.13285 3.18542 3.56502 3.80798 3.93957 3.98653 3.99865 4.16793 4.22364 4.30413 4.33517 4.42067 4.45410 4.57422 4.60508 4.63180 4.68707 4.69451 4.73892 4.76862 4.83081 4.85920 4.94588 4.99305 5.01900 5.11540 5.13351 5.17360 5.20544 5.23494 5.29004 5.34863 5.42899 5.47509 5.54668 5.62845 5.66634 5.68704 5.76714 5.79163 6.11625 6.14105 6.15417 6.22293 6.23257 6.42172 6.85531 7.04517 7.43309 8.90317 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.003138 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.172862 B = 8920.252859 C = 9411.598754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C 0.227 3.773 4 H -0.005 1.005 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.095 3.905 15 H 0.005 0.995 16 C -0.089 4.089 17 C 0.067 3.933 18 N -0.523 5.523 19 C 0.090 3.910 20 C -0.086 4.086 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.107 4.107 26 C 0.085 3.915 27 H 0.025 0.975 28 C -0.138 4.138 29 C -0.098 4.098 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.261 0.739 36 H 0.329 0.671 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.017 0.983 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.116 0.884 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.131 0.869 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.078 0.922 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.161 17.235 9.143 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.013 0.987 5 C -0.599 4.599 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.303 5.303 14 C -0.015 4.015 15 H 0.024 0.976 16 C -0.128 4.128 17 C -0.061 4.061 18 N -0.248 5.248 19 C -0.037 4.037 20 C -0.087 4.087 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.125 4.125 26 C -0.023 4.023 27 H 0.043 0.957 28 C -0.196 4.196 29 C -0.137 4.137 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.035 0.965 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.054 0.946 43 H 0.134 0.866 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.149 0.851 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.097 0.903 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.147 16.832 9.160 22.689 hybrid contribution 2.819 0.111 -1.413 3.155 sum -9.328 16.944 7.747 20.835 Atomic orbital electron populations 1.21526 0.96411 0.99362 1.00566 1.21354 0.94336 0.98470 0.99913 1.18873 0.91044 0.91220 0.87023 0.98671 1.22161 0.94125 1.37420 1.06158 0.93353 1.25666 1.02171 0.94832 0.95373 1.70004 1.36562 1.38270 1.10168 0.85764 0.81136 0.78123 0.77521 1.19566 1.20883 1.20172 1.60863 1.55749 1.06392 1.07344 1.21359 0.95345 0.88668 0.96168 0.97646 1.21399 0.97446 0.94214 0.99712 1.21979 1.00450 0.94076 0.89629 1.62027 1.29530 1.09739 1.23459 1.21173 0.92318 0.87937 1.02268 1.19834 0.95576 0.99592 0.93650 1.21232 0.97075 1.00611 0.95931 1.21369 0.92952 1.00231 1.00367 1.21450 1.00211 0.99902 0.93131 1.21451 0.96498 0.99539 0.97123 1.21197 0.92913 0.98741 0.99671 1.21590 0.88606 0.95152 0.96975 0.95690 1.21860 1.02767 1.00114 0.94819 1.21696 1.01724 0.93952 0.96296 0.92388 0.93816 0.95334 0.95364 0.92302 0.92928 0.85474 0.94330 0.91269 0.96511 0.90164 0.87817 0.94631 0.86557 0.84843 0.84272 0.84206 0.85099 0.91144 0.91416 0.91390 0.90336 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.72 71.98 0.70 -4.34 16 2 C -0.10 -5.01 5.44 30.59 0.17 -4.85 16 3 C 0.23 11.53 1.81 44.17 0.08 11.61 16 4 H 0.00 -0.27 7.19 -2.39 -0.02 -0.29 16 5 C -0.56 -30.74 8.25 25.60 0.21 -30.53 16 6 H 0.05 2.62 7.75 -2.91 -0.02 2.60 16 7 C 0.02 1.09 5.30 84.66 0.45 1.54 16 8 N -0.91 -52.88 11.30 21.45 0.24 -52.63 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.67 -28.49 5.52 -472.92 -2.61 -31.10 16 14 C 0.10 3.61 2.36 45.00 0.11 3.72 16 15 H 0.01 0.25 7.62 -2.39 -0.02 0.23 16 16 C -0.09 -3.16 5.58 30.64 0.17 -2.99 16 17 C 0.07 2.00 5.21 86.32 0.45 2.45 16 18 N -0.52 -13.30 4.49 -875.62 -3.93 -17.24 16 19 C 0.09 1.89 4.81 85.56 0.41 2.30 16 20 C -0.09 -1.82 4.68 -19.87 -0.09 -1.92 16 21 C -0.13 -2.73 8.23 22.27 0.18 -2.55 16 22 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 23 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 24 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 25 C -0.11 -2.06 9.72 22.27 0.22 -1.84 16 26 C 0.09 2.19 2.44 44.94 0.11 2.30 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 C -0.14 -2.60 8.53 71.98 0.61 -1.99 16 29 C -0.10 -2.95 4.63 30.65 0.14 -2.81 16 30 H 0.06 2.28 7.85 -2.38 -0.02 2.26 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.06 3.25 5.99 -2.39 -0.01 3.24 16 35 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 36 H 0.33 13.62 8.06 -89.69 -0.72 12.89 16 37 H 0.04 1.54 7.51 -2.39 -0.02 1.52 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 2.30 6.06 -2.39 -0.01 2.28 16 41 H 0.10 1.82 5.84 -2.39 -0.01 1.81 16 42 H 0.04 0.77 8.04 -2.39 -0.02 0.75 16 43 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 44 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 48 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 1.07 6.58 -2.39 -0.02 1.06 16 51 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 52 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -60.78 397.51 0.46 -60.32 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.14 Total: 30.83 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 4.59 Total: -36.06 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -6.30 Total: -100.97 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -60.78 0.46 -60.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273875451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.180 kcal (2) G-P(sol) polarization free energy of solvation -60.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds