Wall clock time and date at job start Tue Mar 31 2020 11:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 H 1.09000 * 109.47233 * 305.63978 * 3 2 1 5 5 C 1.50704 * 109.46966 * 185.64481 * 3 2 1 6 6 H 1.08004 * 119.99705 * 239.99708 * 5 3 2 7 7 C 1.37876 * 120.00431 * 59.99601 * 5 3 2 8 8 N 1.31517 * 119.99394 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00280 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46981 * 120.00137 * 9 7 5 12 12 H 1.48496 * 109.47089 * 240.00188 * 9 7 5 13 13 N 1.46894 * 109.47250 * 65.64084 * 3 2 1 14 14 C 1.46900 * 111.00109 * 204.30587 * 13 3 2 15 15 H 1.08996 * 109.52436 * 325.80572 * 14 13 3 16 16 C 1.53116 * 109.52245 * 86.00147 * 14 13 3 17 17 C 1.53037 * 109.28136 * 177.56255 * 16 14 13 18 18 N 1.46848 * 109.52041 * 300.81942 * 17 16 14 19 19 C 1.46897 * 111.00165 * 185.83881 * 18 17 16 20 20 C 1.50702 * 109.47331 * 65.78784 * 19 18 17 21 21 C 1.38235 * 119.99835 * 269.73394 * 20 19 18 22 22 C 1.38238 * 119.99764 * 179.76609 * 21 20 19 23 23 C 1.38228 * 120.00182 * 0.50049 * 22 21 20 24 24 C 1.38244 * 119.99886 * 359.74671 * 23 22 21 25 25 C 1.38235 * 119.99935 * 89.99578 * 20 19 18 26 26 C 1.46846 * 111.19927 * 61.73908 * 18 17 16 27 27 H 1.09000 * 109.45383 * 178.24740 * 26 18 17 28 28 C 1.53002 * 109.46140 * 58.27591 * 26 18 17 29 29 C 1.53033 * 109.52336 * 298.25732 * 26 18 17 30 30 H 1.09001 * 109.46794 * 53.71215 * 1 2 3 31 31 H 1.09003 * 109.47308 * 293.71280 * 1 2 3 32 32 H 1.08998 * 109.47337 * 173.71450 * 1 2 3 33 33 H 1.09003 * 109.46584 * 120.00210 * 2 1 3 34 34 H 1.08994 * 109.46730 * 239.99678 * 2 1 3 35 35 H 0.97003 * 119.99603 * 180.02562 * 8 7 5 36 36 H 1.00894 * 111.00184 * 328.26480 * 13 3 2 37 37 H 1.09007 * 109.50023 * 297.49976 * 16 14 13 38 38 H 1.09000 * 109.50489 * 57.61514 * 16 14 13 39 39 H 1.08994 * 109.46669 * 180.80238 * 17 16 14 40 40 H 1.09007 * 109.46095 * 60.82765 * 17 16 14 41 41 H 1.08999 * 109.47139 * 185.78836 * 19 18 17 42 42 H 1.08999 * 109.47300 * 305.79030 * 19 18 17 43 43 H 1.08002 * 120.00432 * 359.97438 * 21 20 19 44 44 H 1.07998 * 119.99946 * 180.22644 * 22 21 20 45 45 H 1.07996 * 120.00722 * 179.72862 * 23 22 21 46 46 H 1.07996 * 120.00149 * 179.97438 * 24 23 22 47 47 H 1.07995 * 119.99829 * 0.02562 * 25 20 19 48 48 H 1.09000 * 109.47271 * 299.94413 * 28 26 18 49 49 H 1.09003 * 109.47045 * 59.94876 * 28 26 18 50 50 H 1.09002 * 109.46712 * 179.97438 * 28 26 18 51 51 H 1.08991 * 109.51003 * 299.23709 * 29 26 18 52 52 H 1.09004 * 109.53712 * 179.13769 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1302 0.8829 -1.2522 8 7 3.3831 0.3455 -2.1917 9 14 5.9901 0.8864 -1.4258 10 1 6.5964 1.5470 -0.2420 11 1 6.4813 -0.5121 -1.5173 12 1 6.3711 1.6264 -2.6555 13 7 1.6647 2.0945 1.2616 14 6 1.6001 3.5534 1.1014 15 1 2.3598 3.8756 0.3893 16 6 0.2136 3.9508 0.5876 17 6 0.1322 5.4753 0.4806 18 7 0.3752 6.0734 1.7996 19 6 0.1686 7.5274 1.7644 20 6 -1.2842 7.8220 1.4932 21 6 -1.7292 7.9655 0.1923 22 6 -3.0628 8.2309 -0.0566 23 6 -3.9493 8.3633 0.9956 24 6 -3.5033 8.2249 2.2968 25 6 -2.1708 7.9542 2.5456 26 6 1.7188 5.7445 2.2925 27 1 1.8800 6.2271 3.2565 28 6 2.7645 6.2415 1.2923 29 6 1.8474 4.2281 2.4535 30 1 -0.3633 0.6082 -0.8284 31 1 -0.3634 0.4133 0.9409 32 1 -0.3634 -1.0214 -0.1125 33 1 1.8932 -0.5139 0.8900 34 1 1.8932 -0.5139 -0.8899 35 1 3.7979 -0.0501 -2.9742 36 1 0.7912 1.7302 1.6111 37 1 0.0488 3.5078 -0.3946 38 1 -0.5477 3.5935 1.2810 39 1 -0.8585 5.7623 0.1286 40 1 0.8848 5.8306 -0.2234 41 1 0.4537 7.9582 2.7243 42 1 0.7811 7.9624 0.9747 43 1 -1.0356 7.8668 -0.6297 44 1 -3.4111 8.3394 -1.0731 45 1 -4.9904 8.5750 0.8013 46 1 -4.1959 8.3287 3.1189 47 1 -1.8222 7.8468 3.5620 48 1 2.6036 5.7588 0.3284 49 1 2.6730 7.3216 1.1776 50 1 3.7619 5.9978 1.6583 51 1 1.1119 3.8751 3.1763 52 1 2.8497 3.9826 2.8048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273875457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:30 Heat of formation + Delta-G solvation = 19.547910 kcal Electronic energy + Delta-G solvation = -27495.124811 eV Core-core repulsion = 24072.604508 eV Total energy + Delta-G solvation = -3422.520302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03895 -38.80550 -36.30068 -33.79750 -32.30807 -31.48553 -31.08381 -30.78390 -29.12980 -27.25043 -26.21810 -25.20091 -23.04755 -22.86426 -22.27029 -21.57750 -20.81915 -19.58120 -18.26512 -16.87805 -16.28586 -16.11657 -15.54792 -15.34330 -14.91685 -14.49378 -14.34329 -14.04180 -13.79019 -13.51417 -13.43765 -13.26093 -13.03451 -12.69545 -12.66686 -12.35716 -12.16395 -11.95749 -11.72916 -11.63934 -11.35984 -11.27158 -11.16662 -11.04439 -10.87808 -10.74450 -10.58298 -10.49294 -10.19256 -9.96947 -9.92319 -9.63939 -9.31559 -9.02778 -8.95490 -8.86967 -8.32574 -8.11892 -7.10872 -5.94025 -3.97699 1.23296 1.30842 3.31695 3.39917 3.44947 3.59868 4.18895 4.46623 4.66429 4.74513 4.89461 4.99128 5.02518 5.14290 5.16734 5.31313 5.36011 5.36958 5.40552 5.45872 5.54929 5.61999 5.66808 5.75388 5.88563 5.89900 5.94508 5.96715 6.07457 6.19705 6.20917 6.21317 6.27994 6.34616 6.38186 6.40019 6.40996 6.43478 6.52120 6.54278 6.72556 6.89056 6.89520 6.91951 7.13994 7.20340 7.26766 7.30077 7.58377 7.82758 7.96628 8.39341 8.45441 8.84326 9.11194 9.67273 11.11147 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.003191 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.284868 B = 8773.538740 C = 9335.459008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.682 5.682 14 C 0.095 3.905 15 H 0.080 0.920 16 C -0.142 4.142 17 C 0.055 3.945 18 N -0.523 5.523 19 C 0.090 3.910 20 C -0.071 4.071 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.100 4.100 26 C 0.084 3.916 27 H 0.077 0.923 28 C -0.189 4.189 29 C -0.095 4.095 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.258 0.742 36 H 0.317 0.683 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.067 0.933 49 H 0.047 0.953 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 15.682 7.022 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.312 5.312 14 C -0.016 4.016 15 H 0.098 0.902 16 C -0.181 4.181 17 C -0.074 4.074 18 N -0.247 5.247 19 C -0.037 4.037 20 C -0.072 4.072 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.025 4.025 27 H 0.095 0.905 28 C -0.248 4.248 29 C -0.134 4.134 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.086 0.914 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.779 15.360 7.422 20.179 hybrid contribution 0.662 0.339 -1.396 1.582 sum -10.118 15.699 6.026 19.625 Atomic orbital electron populations 1.21872 0.99633 0.99600 0.99516 1.21757 0.91202 1.00518 1.02928 1.19142 0.95223 0.89844 0.84535 0.98172 1.21267 0.91417 1.36112 1.04019 0.92131 1.24955 0.97918 0.95793 0.95949 1.69890 1.34455 1.39732 1.09577 0.86539 0.86078 0.77591 0.77782 1.19811 1.21174 1.21332 1.60750 1.35449 1.02056 1.32897 1.21510 0.94620 0.89713 0.95767 0.90153 1.22330 0.99903 0.94337 1.01548 1.22132 1.00479 0.95482 0.89263 1.62201 1.27509 1.08468 1.26548 1.21039 0.91779 0.89502 1.01392 1.19799 0.95695 0.98530 0.93142 1.21099 0.95944 0.99883 0.96319 1.21111 0.93525 1.00332 0.99027 1.21119 0.99456 1.00780 0.92947 1.21138 0.95820 1.00385 0.96763 1.21014 0.93054 0.98871 0.98886 1.21727 0.86086 0.97306 0.97335 0.90510 1.22521 1.00466 1.00221 1.01595 1.21562 1.01988 0.91522 0.98319 0.93991 0.94579 0.94519 0.94147 0.88397 0.93243 0.86571 0.91831 0.91908 0.91113 0.94573 0.90184 0.93911 0.86360 0.86273 0.86408 0.86285 0.86061 0.91402 0.93385 0.91770 0.91914 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.63 37.16 0.36 -2.55 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.38 1.85 -68.87 -0.13 5.25 16 4 H 0.00 0.02 7.21 -51.93 -0.37 -0.36 16 5 C -0.49 -13.37 8.46 -34.44 -0.29 -13.66 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.43 11.29 55.43 0.63 -24.80 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.23 6.05 -100.83 -0.61 -14.84 16 14 C 0.09 1.73 2.03 -67.59 -0.14 1.59 16 15 H 0.08 1.68 6.02 -51.93 -0.31 1.37 16 16 C -0.14 -2.33 5.34 -26.65 -0.14 -2.47 16 17 C 0.05 0.78 4.87 -3.83 -0.02 0.76 16 18 N -0.52 -6.79 4.59 -228.13 -1.05 -7.84 16 19 C 0.09 1.00 4.58 -4.98 -0.02 0.98 16 20 C -0.07 -0.79 4.88 -104.62 -0.51 -1.30 16 21 C -0.11 -1.23 7.89 -39.58 -0.31 -1.54 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 25 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 26 C 0.08 1.11 2.92 -67.72 -0.20 0.91 16 27 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 28 C -0.19 -2.51 8.18 37.16 0.30 -2.20 16 29 C -0.10 -1.49 5.22 -26.65 -0.14 -1.63 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.63 6.68 -51.93 -0.35 0.29 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.32 6.20 6.31 -39.30 -0.25 5.95 16 37 H 0.06 1.14 7.53 -51.93 -0.39 0.75 16 38 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.07 0.98 5.77 -51.93 -0.30 0.68 16 40 H 0.04 0.53 6.19 -51.92 -0.32 0.21 16 41 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 42 H 0.04 0.47 6.89 -51.93 -0.36 0.11 16 43 H 0.12 1.21 7.97 -52.49 -0.42 0.79 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 48 H 0.07 1.03 4.80 -51.93 -0.25 0.78 16 49 H 0.05 0.56 6.77 -51.93 -0.35 0.20 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -28.18 388.48 -12.25 -40.43 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -9.00 Total: 8.49 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -3.05 Total: -23.75 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -1.03 Total: -47.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.18 -12.25 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273875457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.980 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds