Wall clock time and date at job start Tue Mar 31 2020 11:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 H 1.09000 * 109.47233 * 305.63978 * 3 2 1 5 5 C 1.50704 * 109.46966 * 185.64481 * 3 2 1 6 6 H 1.08004 * 119.99705 * 239.99708 * 5 3 2 7 7 C 1.37876 * 120.00431 * 59.99601 * 5 3 2 8 8 N 1.31517 * 119.99394 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00280 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46981 * 120.00137 * 9 7 5 12 12 H 1.48496 * 109.47089 * 240.00188 * 9 7 5 13 13 N 1.46894 * 109.47250 * 65.64084 * 3 2 1 14 14 C 1.46900 * 111.00109 * 204.30587 * 13 3 2 15 15 H 1.08996 * 109.52436 * 325.80572 * 14 13 3 16 16 C 1.53116 * 109.52245 * 86.00147 * 14 13 3 17 17 C 1.53037 * 109.28136 * 177.56255 * 16 14 13 18 18 N 1.46848 * 109.52041 * 300.81942 * 17 16 14 19 19 C 1.46897 * 111.00165 * 185.83881 * 18 17 16 20 20 C 1.50702 * 109.47331 * 65.78784 * 19 18 17 21 21 C 1.38235 * 119.99835 * 269.73394 * 20 19 18 22 22 C 1.38238 * 119.99764 * 179.76609 * 21 20 19 23 23 C 1.38228 * 120.00182 * 0.50049 * 22 21 20 24 24 C 1.38244 * 119.99886 * 359.74671 * 23 22 21 25 25 C 1.38235 * 119.99935 * 89.99578 * 20 19 18 26 26 C 1.46846 * 111.19927 * 61.73908 * 18 17 16 27 27 H 1.09000 * 109.45383 * 178.24740 * 26 18 17 28 28 C 1.53002 * 109.46140 * 58.27591 * 26 18 17 29 29 C 1.53033 * 109.52336 * 298.25732 * 26 18 17 30 30 H 1.09001 * 109.46794 * 53.71215 * 1 2 3 31 31 H 1.09003 * 109.47308 * 293.71280 * 1 2 3 32 32 H 1.08998 * 109.47337 * 173.71450 * 1 2 3 33 33 H 1.09003 * 109.46584 * 120.00210 * 2 1 3 34 34 H 1.08994 * 109.46730 * 239.99678 * 2 1 3 35 35 H 0.97003 * 119.99603 * 180.02562 * 8 7 5 36 36 H 1.00894 * 111.00184 * 328.26480 * 13 3 2 37 37 H 1.09007 * 109.50023 * 297.49976 * 16 14 13 38 38 H 1.09000 * 109.50489 * 57.61514 * 16 14 13 39 39 H 1.08994 * 109.46669 * 180.80238 * 17 16 14 40 40 H 1.09007 * 109.46095 * 60.82765 * 17 16 14 41 41 H 1.08999 * 109.47139 * 185.78836 * 19 18 17 42 42 H 1.08999 * 109.47300 * 305.79030 * 19 18 17 43 43 H 1.08002 * 120.00432 * 359.97438 * 21 20 19 44 44 H 1.07998 * 119.99946 * 180.22644 * 22 21 20 45 45 H 1.07996 * 120.00722 * 179.72862 * 23 22 21 46 46 H 1.07996 * 120.00149 * 179.97438 * 24 23 22 47 47 H 1.07995 * 119.99829 * 0.02562 * 25 20 19 48 48 H 1.09000 * 109.47271 * 299.94413 * 28 26 18 49 49 H 1.09003 * 109.47045 * 59.94876 * 28 26 18 50 50 H 1.09002 * 109.46712 * 179.97438 * 28 26 18 51 51 H 1.08991 * 109.51003 * 299.23709 * 29 26 18 52 52 H 1.09004 * 109.53712 * 179.13769 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1302 0.8829 -1.2522 8 7 3.3831 0.3455 -2.1917 9 14 5.9901 0.8864 -1.4258 10 1 6.5964 1.5470 -0.2420 11 1 6.4813 -0.5121 -1.5173 12 1 6.3711 1.6264 -2.6555 13 7 1.6647 2.0945 1.2616 14 6 1.6001 3.5534 1.1014 15 1 2.3598 3.8756 0.3893 16 6 0.2136 3.9508 0.5876 17 6 0.1322 5.4753 0.4806 18 7 0.3752 6.0734 1.7996 19 6 0.1686 7.5274 1.7644 20 6 -1.2842 7.8220 1.4932 21 6 -1.7292 7.9655 0.1923 22 6 -3.0628 8.2309 -0.0566 23 6 -3.9493 8.3633 0.9956 24 6 -3.5033 8.2249 2.2968 25 6 -2.1708 7.9542 2.5456 26 6 1.7188 5.7445 2.2925 27 1 1.8800 6.2271 3.2565 28 6 2.7645 6.2415 1.2923 29 6 1.8474 4.2281 2.4535 30 1 -0.3633 0.6082 -0.8284 31 1 -0.3634 0.4133 0.9409 32 1 -0.3634 -1.0214 -0.1125 33 1 1.8932 -0.5139 0.8900 34 1 1.8932 -0.5139 -0.8899 35 1 3.7979 -0.0501 -2.9742 36 1 0.7912 1.7302 1.6111 37 1 0.0488 3.5078 -0.3946 38 1 -0.5477 3.5935 1.2810 39 1 -0.8585 5.7623 0.1286 40 1 0.8848 5.8306 -0.2234 41 1 0.4537 7.9582 2.7243 42 1 0.7811 7.9624 0.9747 43 1 -1.0356 7.8668 -0.6297 44 1 -3.4111 8.3394 -1.0731 45 1 -4.9904 8.5750 0.8013 46 1 -4.1959 8.3287 3.1189 47 1 -1.8222 7.8468 3.5620 48 1 2.6036 5.7588 0.3284 49 1 2.6730 7.3216 1.1776 50 1 3.7619 5.9978 1.6583 51 1 1.1119 3.8751 3.1763 52 1 2.8497 3.9826 2.8048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273875457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:29 Heat of formation + Delta-G solvation = 4.477298 kcal Electronic energy + Delta-G solvation = -27495.778322 eV Core-core repulsion = 24072.604508 eV Total energy + Delta-G solvation = -3423.173813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09259 -39.75785 -37.93360 -35.24680 -33.86617 -33.03656 -32.11922 -31.66699 -30.49204 -28.66728 -27.84663 -26.33337 -24.67543 -24.06576 -23.18106 -22.85698 -21.76634 -21.48060 -19.53301 -18.29686 -17.62881 -17.41332 -16.84840 -16.38498 -16.16970 -15.86812 -15.67509 -15.47198 -15.02558 -14.78373 -14.67271 -14.45107 -14.22970 -14.00460 -13.90296 -13.59763 -13.36294 -13.33313 -13.07477 -13.03769 -12.81759 -12.70711 -12.52817 -12.50782 -12.30710 -11.99599 -11.91749 -11.79556 -11.76676 -11.56194 -11.52951 -11.45768 -10.97957 -10.80227 -10.42784 -9.75192 -9.65481 -9.16363 -8.87917 -8.05587 -6.17145 0.47399 0.56385 1.38195 1.40659 1.52150 2.43569 2.76405 3.19073 3.22195 3.61289 3.81906 3.89341 3.99708 4.05831 4.20112 4.21276 4.25636 4.32533 4.35492 4.43051 4.49500 4.52526 4.57959 4.62297 4.66815 4.67984 4.72704 4.78912 4.80024 4.85692 4.89323 5.02629 5.07855 5.09053 5.16978 5.18959 5.22018 5.23830 5.25393 5.37934 5.41155 5.51795 5.61916 5.64753 5.67725 5.76373 5.78672 5.92530 6.14738 6.15998 6.23604 6.39969 6.58613 6.98080 7.07163 7.52004 8.97349 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.003191 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.284868 B = 8773.538740 C = 9335.459008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.230 3.770 4 H -0.033 1.033 5 C -0.506 4.506 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.683 5.683 14 C 0.098 3.902 15 H 0.047 0.953 16 C -0.132 4.132 17 C 0.065 3.935 18 N -0.523 5.523 19 C 0.093 3.907 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.109 4.109 26 C 0.090 3.910 27 H 0.102 0.898 28 C -0.185 4.185 29 C -0.087 4.087 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.259 0.741 36 H 0.326 0.674 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.132 0.868 48 H 0.041 0.959 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.068 0.932 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.117 17.008 8.544 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.122 3.878 4 H -0.016 1.016 5 C -0.545 4.545 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.313 5.313 14 C -0.013 4.013 15 H 0.066 0.934 16 C -0.171 4.171 17 C -0.064 4.064 18 N -0.247 5.247 19 C -0.034 4.034 20 C -0.086 4.086 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.128 4.128 26 C -0.019 4.019 27 H 0.120 0.880 28 C -0.243 4.243 29 C -0.126 4.126 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.144 0.856 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.134 0.866 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.150 0.850 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.764 16.700 8.957 22.305 hybrid contribution 0.918 -0.040 -1.870 2.083 sum -10.846 16.661 7.087 21.106 Atomic orbital electron populations 1.21728 0.96380 1.00940 1.00377 1.21591 0.94135 0.99257 1.01026 1.18861 0.93703 0.90356 0.84894 1.01566 1.21501 0.92957 1.36131 1.03897 0.93443 1.25660 1.02047 0.95514 0.95694 1.70016 1.35996 1.40147 1.09882 0.85598 0.81151 0.77686 0.77745 1.19505 1.20625 1.20864 1.60683 1.36125 1.03614 1.30926 1.21474 0.94747 0.88233 0.96832 0.93444 1.22167 0.98642 0.96132 1.00186 1.21959 1.00598 0.93703 0.90091 1.62181 1.27121 1.10035 1.25338 1.21077 0.92112 0.87845 1.02322 1.19860 0.95761 0.99470 0.93502 1.21222 0.96549 1.00579 0.96404 1.21370 0.93358 1.00129 1.00129 1.21444 1.00492 0.99997 0.92812 1.21452 0.95937 0.99650 0.97572 1.21226 0.93462 0.98865 0.99218 1.21695 0.86252 0.95487 0.98463 0.87994 1.22468 1.00411 1.01222 1.00243 1.21466 1.01502 0.93270 0.96339 0.94689 0.92446 0.92564 0.94615 0.91568 0.93204 0.85590 0.94099 0.91345 0.90460 0.95442 0.88503 0.93890 0.86554 0.84914 0.84315 0.84212 0.85034 0.93959 0.91424 0.91998 0.91371 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.63 71.98 0.69 -4.58 16 2 C -0.12 -5.84 5.37 30.59 0.16 -5.68 16 3 C 0.23 11.66 1.85 44.17 0.08 11.75 16 4 H -0.03 -1.88 7.21 -2.39 -0.02 -1.90 16 5 C -0.51 -28.54 8.46 25.60 0.22 -28.32 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.49 5.29 84.65 0.45 0.94 16 8 N -0.92 -53.59 11.29 21.45 0.24 -53.35 16 9 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.68 -29.04 6.05 -472.92 -2.86 -31.90 16 14 C 0.10 3.64 2.03 45.00 0.09 3.74 16 15 H 0.05 2.09 6.02 -2.39 -0.01 2.08 16 16 C -0.13 -4.39 5.34 30.65 0.16 -4.23 16 17 C 0.07 1.83 4.87 86.33 0.42 2.25 16 18 N -0.52 -12.75 4.59 -875.66 -4.02 -16.77 16 19 C 0.09 1.88 4.58 85.56 0.39 2.27 16 20 C -0.09 -1.75 4.88 -19.87 -0.10 -1.85 16 21 C -0.13 -2.65 7.89 22.27 0.18 -2.48 16 22 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 24 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 25 C -0.11 -2.04 9.70 22.27 0.22 -1.82 16 26 C 0.09 2.23 2.92 44.94 0.13 2.36 16 27 H 0.10 2.11 8.01 -2.39 -0.02 2.09 16 28 C -0.18 -4.77 8.18 71.98 0.59 -4.18 16 29 C -0.09 -2.68 5.22 30.65 0.16 -2.52 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.95 6.68 -2.39 -0.02 1.93 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.07 3.62 5.94 -2.39 -0.01 3.61 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.33 12.66 6.31 -89.70 -0.57 12.09 16 37 H 0.04 1.53 7.53 -2.38 -0.02 1.51 16 38 H 0.07 2.20 8.09 -2.39 -0.02 2.18 16 39 H 0.08 2.10 5.77 -2.39 -0.01 2.09 16 40 H 0.03 0.83 6.19 -2.38 -0.01 0.81 16 41 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 42 H 0.04 0.87 6.89 -2.39 -0.02 0.85 16 43 H 0.12 2.33 7.97 -2.91 -0.02 2.31 16 44 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 45 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 48 H 0.04 1.31 4.80 -2.39 -0.01 1.30 16 49 H 0.07 1.46 6.77 -2.39 -0.02 1.45 16 50 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -62.00 388.48 0.22 -61.78 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.32 Total: 31.78 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 4.52 Total: -38.37 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -6.64 Total: -102.02 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.00 0.22 -61.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273875457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.257 kcal (2) G-P(sol) polarization free energy of solvation -61.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds