Wall clock time and date at job start Tue Mar 31 2020 11:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.50307 * 2 1 4 4 C 1.53113 * 109.50425 * 239.92378 * 2 1 3 5 5 C 1.53122 * 109.16295 * 182.36731 * 4 2 1 6 6 H 1.09002 * 109.50015 * 297.67405 * 5 4 2 7 7 N 1.46895 * 109.50652 * 177.59276 * 5 4 2 8 8 C 1.46896 * 111.00306 * 154.99630 * 7 5 4 9 9 C 1.52996 * 109.47496 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47346 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46931 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00420 * 15 13 11 19 19 C 1.53034 * 109.27653 * 57.64783 * 5 4 2 20 20 N 1.46839 * 109.52846 * 300.82375 * 19 5 4 21 21 C 1.46902 * 111.00220 * 185.84189 * 20 19 5 22 22 C 1.50703 * 109.47026 * 169.74278 * 21 20 19 23 23 C 1.38239 * 120.00137 * 269.72573 * 22 21 20 24 24 C 1.38228 * 119.99676 * 179.80839 * 23 22 21 25 25 C 1.38240 * 120.00494 * 0.40107 * 24 23 22 26 26 C 1.38235 * 119.99427 * 359.85479 * 25 24 23 27 27 C 1.38226 * 120.00145 * 359.95221 * 26 25 24 28 28 C 1.46846 * 111.19820 * 61.74295 * 20 19 5 29 29 H 1.09003 * 109.47285 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47447 * 300.07871 * 1 2 3 31 31 H 1.09008 * 109.47510 * 60.08106 * 1 2 3 32 32 H 1.08998 * 109.52833 * 62.45949 * 4 2 1 33 33 H 1.09005 * 109.52431 * 302.26965 * 4 2 1 34 34 H 1.00900 * 111.00389 * 278.95545 * 7 5 4 35 35 H 1.09000 * 109.47017 * 60.00110 * 8 7 5 36 36 H 1.09004 * 109.47072 * 300.00147 * 8 7 5 37 37 H 1.09004 * 109.47368 * 60.00058 * 9 8 7 38 38 H 1.09004 * 109.47108 * 300.00159 * 9 8 7 39 39 H 1.09000 * 109.46986 * 60.00254 * 10 9 8 40 40 H 1.08992 * 109.46974 * 300.00318 * 10 9 8 41 41 H 0.97000 * 119.99706 * 359.97438 * 14 13 11 42 42 H 1.08997 * 109.46183 * 60.84669 * 19 5 4 43 43 H 1.09008 * 109.45819 * 180.80796 * 19 5 4 44 44 H 1.08994 * 109.46738 * 289.74084 * 21 20 19 45 45 H 1.09000 * 109.47109 * 49.74668 * 21 20 19 46 46 H 1.07998 * 119.99425 * 0.02562 * 23 22 21 47 47 H 1.08006 * 120.00003 * 180.22708 * 24 23 22 48 48 H 1.07995 * 120.00046 * 179.82948 * 25 24 23 49 49 H 1.08001 * 119.99270 * 179.97438 * 26 25 24 50 50 H 1.08009 * 119.99552 * 179.97438 * 27 26 25 51 51 H 1.08999 * 109.46611 * 178.24736 * 28 20 19 52 52 H 1.08994 * 109.45372 * 58.26867 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0411 -0.7233 -1.2489 5 6 3.5712 -0.7706 -1.2115 6 1 3.9672 0.2447 -1.2312 7 7 4.0676 -1.5135 -2.3775 8 6 5.4370 -1.1050 -2.7179 9 6 5.9187 -1.8990 -3.9338 10 6 7.3447 -1.4731 -4.2888 11 6 7.8193 -2.2556 -5.4861 12 1 7.1688 -2.9836 -5.9479 13 6 9.0841 -2.0421 -5.9919 14 7 9.8764 -1.1560 -5.4292 15 14 9.6721 -3.0116 -7.4764 16 1 11.0567 -2.5992 -7.8201 17 1 9.6525 -4.4623 -7.1597 18 1 8.7750 -2.7444 -8.6292 19 6 4.0237 -1.4715 0.0715 20 7 3.5100 -0.7411 1.2372 21 6 4.0387 -1.3047 2.4865 22 6 3.6996 -0.3885 3.6340 23 6 4.5742 0.6192 3.9957 24 6 4.2612 1.4620 5.0456 25 6 3.0776 1.2921 5.7393 26 6 2.2056 0.2811 5.3810 27 6 2.5166 -0.5592 4.3285 28 6 2.0417 -0.7233 1.2478 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3634 0.5126 -0.8908 32 1 1.7151 -0.1867 -2.1399 33 1 1.6457 -1.7389 -1.2692 34 1 4.0155 -2.5089 -2.2211 35 1 6.0957 -1.3015 -1.8720 36 1 5.4514 -0.0401 -2.9500 37 1 5.2601 -1.7029 -4.7800 38 1 5.9043 -2.9638 -3.7014 39 1 8.0036 -1.6688 -3.4429 40 1 7.3586 -0.4083 -4.5214 41 1 9.5709 -0.6524 -4.6586 42 1 3.6389 -2.4912 0.0833 43 1 5.1129 -1.4941 0.1081 44 1 3.5937 -2.2844 2.6600 45 1 5.1213 -1.4057 2.4100 46 1 5.5002 0.7500 3.4556 47 1 4.9427 2.2516 5.3259 48 1 2.8344 1.9489 6.5614 49 1 1.2810 0.1482 5.9232 50 1 1.8354 -1.3493 4.0488 51 1 1.6912 -0.2023 2.1388 52 1 1.6663 -1.7465 1.2541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274325146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:09 Heat of formation + Delta-G solvation = -1.536337 kcal Electronic energy + Delta-G solvation = -26069.245507 eV Core-core repulsion = 22645.810923 eV Total energy + Delta-G solvation = -3423.434584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15958 -39.00454 -36.28002 -34.80078 -33.84036 -31.99909 -31.27795 -31.14390 -28.84526 -27.06606 -26.44019 -25.39006 -23.11866 -22.79648 -22.53475 -21.30241 -21.06178 -20.55994 -19.68780 -17.07117 -16.70103 -16.19871 -15.94594 -15.66082 -15.23907 -14.86183 -14.72246 -14.54947 -14.14749 -13.94114 -13.68999 -13.67087 -13.35035 -13.02223 -12.87643 -12.76141 -12.72887 -12.62032 -12.12335 -11.91284 -11.70206 -11.44776 -11.34314 -11.22328 -11.21297 -10.87510 -10.77151 -10.72499 -10.56046 -10.35468 -10.10277 -9.81835 -9.66817 -9.17496 -9.08736 -8.54604 -8.49437 -8.28907 -8.20311 -6.32299 -4.00711 1.04529 1.13579 3.35968 3.46133 3.48477 3.67085 3.82605 4.26899 4.43016 4.53300 4.58349 4.69230 4.72081 4.77427 4.81883 4.86081 4.92632 5.02050 5.13500 5.21024 5.27382 5.32673 5.37358 5.39702 5.44729 5.45783 5.52506 5.59229 5.61894 5.71996 5.76237 5.77518 5.80925 5.87549 5.92456 5.95569 6.16874 6.22689 6.23799 6.24019 6.26102 6.35441 6.60705 6.63350 6.71150 6.81885 6.85279 7.00460 7.30520 7.46871 7.55025 7.62431 8.27344 8.51035 8.93078 9.71481 11.08386 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.002210 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.144323 B =12664.065836 C =13846.738989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.078 0.922 4 C -0.102 4.102 5 C 0.091 3.909 6 H 0.084 0.916 7 N -0.682 5.682 8 C 0.059 3.941 9 C -0.100 4.100 10 C 0.009 3.991 11 C -0.600 4.600 12 H 0.048 0.952 13 C 0.012 3.988 14 N -0.915 5.915 15 Si 1.069 2.931 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.288 1.288 19 C 0.029 3.971 20 N -0.528 5.528 21 C 0.092 3.908 22 C -0.074 4.074 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.115 4.115 28 C 0.058 3.942 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.336 0.664 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.004 0.996 40 H 0.007 0.993 41 H 0.268 0.732 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.078 0.922 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.174 2.778 22.810 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.020 4.020 6 H 0.102 0.898 7 N -0.311 5.311 8 C -0.069 4.069 9 C -0.138 4.138 10 C -0.028 4.028 11 C -0.638 4.638 12 H 0.066 0.934 13 C -0.191 4.191 14 N -0.551 5.551 15 Si 0.897 3.103 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.214 1.214 19 C -0.101 4.101 20 N -0.252 5.252 21 C -0.036 4.036 22 C -0.075 4.075 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.134 4.134 28 C -0.070 4.070 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.135 0.865 51 H 0.096 0.904 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.994 3.454 21.257 28.064 hybrid contribution -1.058 -1.073 1.918 2.439 sum -19.052 2.381 23.175 30.096 Atomic orbital electron populations 1.21764 0.94883 1.01703 1.01811 1.21148 0.95102 1.00444 0.94160 0.90375 1.21625 0.94531 1.00469 0.97404 1.21582 0.95197 0.98488 0.86704 0.89765 1.60704 1.24280 1.09747 1.36411 1.22165 0.86557 1.00471 0.97743 1.21492 0.98874 0.97993 0.95469 1.19189 0.90848 0.96332 0.96469 1.22065 1.02214 1.24485 1.15064 0.93353 1.25869 0.93602 0.97420 1.02222 1.70782 1.38522 1.23225 1.22572 0.83546 0.76193 0.75381 0.75143 1.20800 1.21505 1.21427 1.22925 1.00373 0.95429 0.91344 1.61877 1.08276 1.53966 1.01100 1.21053 1.00714 0.94239 0.87548 1.19737 0.94712 0.96926 0.96083 1.21067 0.99584 0.94401 0.96559 1.21177 0.97165 0.99385 0.96139 1.21150 0.94677 0.98265 0.99987 1.21097 0.99601 0.95847 0.97502 1.21046 0.96494 0.99717 0.96104 1.22254 0.86987 0.98792 0.98978 0.92861 0.92759 0.92253 0.91016 0.92367 0.84614 0.95823 0.91469 0.92398 0.93576 0.97773 0.97479 0.92160 0.94841 0.90735 0.94035 0.89802 0.85888 0.86070 0.86267 0.86239 0.86489 0.90358 0.95165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.15 0.34 -0.79 16 2 C -0.09 -0.85 2.88 -90.54 -0.26 -1.11 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.10 -1.12 4.89 -26.61 -0.13 -1.25 16 5 C 0.09 1.14 2.63 -67.63 -0.18 0.96 16 6 H 0.08 1.18 7.80 -51.93 -0.41 0.77 16 7 N -0.68 -9.93 6.25 -106.65 -0.67 -10.60 16 8 C 0.06 1.03 5.48 -3.83 -0.02 1.01 16 9 C -0.10 -2.12 5.41 -26.73 -0.14 -2.27 16 10 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 11 C -0.60 -17.58 9.11 -34.44 -0.31 -17.90 16 12 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 13 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 14 N -0.91 -28.65 13.65 55.43 0.76 -27.89 16 15 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.03 0.33 4.71 -3.84 -0.02 0.31 16 20 N -0.53 -5.60 4.65 -236.12 -1.10 -6.69 16 21 C 0.09 0.88 5.12 -4.97 -0.03 0.85 16 22 C -0.07 -0.70 4.89 -104.62 -0.51 -1.21 16 23 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 27 C -0.12 -0.97 7.88 -39.59 -0.31 -1.28 16 28 C 0.06 0.55 4.45 -3.83 -0.02 0.53 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.34 4.63 8.46 -39.29 -0.33 4.30 16 35 H 0.02 0.41 7.47 -51.93 -0.39 0.02 16 36 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 40 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 41 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 42 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 43 H 0.07 0.93 7.36 -51.92 -0.38 0.55 16 44 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 45 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.85 7.95 -52.48 -0.42 0.44 16 51 H 0.08 0.73 5.75 -51.93 -0.30 0.44 16 52 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 405.48 15.07 6.11 6.11 Total: -1.00 -31.33 405.48 -13.08 -44.42 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -9.72 Total: 1.08 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -3.39 Total: -27.16 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -1.01 Total: -45.18 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.33 -13.08 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274325146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.880 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds