Wall clock time and date at job start Tue Mar 31 2020 11:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.50307 * 2 1 4 4 C 1.53113 * 109.50425 * 239.92378 * 2 1 3 5 5 C 1.53122 * 109.16295 * 182.36731 * 4 2 1 6 6 H 1.09002 * 109.50015 * 297.67405 * 5 4 2 7 7 N 1.46895 * 109.50652 * 177.59276 * 5 4 2 8 8 C 1.46896 * 111.00306 * 154.99630 * 7 5 4 9 9 C 1.52996 * 109.47496 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47346 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46931 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00420 * 15 13 11 19 19 C 1.53034 * 109.27653 * 57.64783 * 5 4 2 20 20 N 1.46839 * 109.52846 * 300.82375 * 19 5 4 21 21 C 1.46902 * 111.00220 * 185.84189 * 20 19 5 22 22 C 1.50703 * 109.47026 * 169.74278 * 21 20 19 23 23 C 1.38239 * 120.00137 * 269.72573 * 22 21 20 24 24 C 1.38228 * 119.99676 * 179.80839 * 23 22 21 25 25 C 1.38240 * 120.00494 * 0.40107 * 24 23 22 26 26 C 1.38235 * 119.99427 * 359.85479 * 25 24 23 27 27 C 1.38226 * 120.00145 * 359.95221 * 26 25 24 28 28 C 1.46846 * 111.19820 * 61.74295 * 20 19 5 29 29 H 1.09003 * 109.47285 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47447 * 300.07871 * 1 2 3 31 31 H 1.09008 * 109.47510 * 60.08106 * 1 2 3 32 32 H 1.08998 * 109.52833 * 62.45949 * 4 2 1 33 33 H 1.09005 * 109.52431 * 302.26965 * 4 2 1 34 34 H 1.00900 * 111.00389 * 278.95545 * 7 5 4 35 35 H 1.09000 * 109.47017 * 60.00110 * 8 7 5 36 36 H 1.09004 * 109.47072 * 300.00147 * 8 7 5 37 37 H 1.09004 * 109.47368 * 60.00058 * 9 8 7 38 38 H 1.09004 * 109.47108 * 300.00159 * 9 8 7 39 39 H 1.09000 * 109.46986 * 60.00254 * 10 9 8 40 40 H 1.08992 * 109.46974 * 300.00318 * 10 9 8 41 41 H 0.97000 * 119.99706 * 359.97438 * 14 13 11 42 42 H 1.08997 * 109.46183 * 60.84669 * 19 5 4 43 43 H 1.09008 * 109.45819 * 180.80796 * 19 5 4 44 44 H 1.08994 * 109.46738 * 289.74084 * 21 20 19 45 45 H 1.09000 * 109.47109 * 49.74668 * 21 20 19 46 46 H 1.07998 * 119.99425 * 0.02562 * 23 22 21 47 47 H 1.08006 * 120.00003 * 180.22708 * 24 23 22 48 48 H 1.07995 * 120.00046 * 179.82948 * 25 24 23 49 49 H 1.08001 * 119.99270 * 179.97438 * 26 25 24 50 50 H 1.08009 * 119.99552 * 179.97438 * 27 26 25 51 51 H 1.08999 * 109.46611 * 178.24736 * 28 20 19 52 52 H 1.08994 * 109.45372 * 58.26867 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0411 -0.7233 -1.2489 5 6 3.5712 -0.7706 -1.2115 6 1 3.9672 0.2447 -1.2312 7 7 4.0676 -1.5135 -2.3775 8 6 5.4370 -1.1050 -2.7179 9 6 5.9187 -1.8990 -3.9338 10 6 7.3447 -1.4731 -4.2888 11 6 7.8193 -2.2556 -5.4861 12 1 7.1688 -2.9836 -5.9479 13 6 9.0841 -2.0421 -5.9919 14 7 9.8764 -1.1560 -5.4292 15 14 9.6721 -3.0116 -7.4764 16 1 11.0567 -2.5992 -7.8201 17 1 9.6525 -4.4623 -7.1597 18 1 8.7750 -2.7444 -8.6292 19 6 4.0237 -1.4715 0.0715 20 7 3.5100 -0.7411 1.2372 21 6 4.0387 -1.3047 2.4865 22 6 3.6996 -0.3885 3.6340 23 6 4.5742 0.6192 3.9957 24 6 4.2612 1.4620 5.0456 25 6 3.0776 1.2921 5.7393 26 6 2.2056 0.2811 5.3810 27 6 2.5166 -0.5592 4.3285 28 6 2.0417 -0.7233 1.2478 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3634 0.5126 -0.8908 32 1 1.7151 -0.1867 -2.1399 33 1 1.6457 -1.7389 -1.2692 34 1 4.0155 -2.5089 -2.2211 35 1 6.0957 -1.3015 -1.8720 36 1 5.4514 -0.0401 -2.9500 37 1 5.2601 -1.7029 -4.7800 38 1 5.9043 -2.9638 -3.7014 39 1 8.0036 -1.6688 -3.4429 40 1 7.3586 -0.4083 -4.5214 41 1 9.5709 -0.6524 -4.6586 42 1 3.6389 -2.4912 0.0833 43 1 5.1129 -1.4941 0.1081 44 1 3.5937 -2.2844 2.6600 45 1 5.1213 -1.4057 2.4100 46 1 5.5002 0.7500 3.4556 47 1 4.9427 2.2516 5.3259 48 1 2.8344 1.9489 6.5614 49 1 1.2810 0.1482 5.9232 50 1 1.8354 -1.3493 4.0488 51 1 1.6912 -0.2023 2.1388 52 1 1.6663 -1.7465 1.2541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274325146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:08 Heat of formation + Delta-G solvation = -18.972486 kcal Electronic energy + Delta-G solvation = -26070.001595 eV Core-core repulsion = 22645.810923 eV Total energy + Delta-G solvation = -3424.190672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95025 -39.76685 -37.60299 -35.96747 -35.39275 -33.46458 -32.24625 -31.79998 -30.21051 -27.77815 -27.26246 -27.18336 -24.56377 -23.79162 -23.43432 -22.38232 -22.15730 -21.75948 -20.65951 -18.91724 -17.71121 -17.07831 -16.91853 -16.45082 -16.13768 -15.97612 -15.78200 -15.60282 -15.49595 -15.22459 -15.06118 -14.64782 -14.53015 -14.27500 -13.87567 -13.61541 -13.48572 -13.45240 -13.37895 -13.28423 -12.87612 -12.65394 -12.54446 -12.42745 -12.10565 -12.01005 -11.98944 -11.85598 -11.81993 -11.69249 -11.60938 -11.41875 -11.26556 -10.65283 -10.55409 -9.80455 -9.75559 -9.47025 -9.29214 -8.70482 -6.40744 0.40849 0.50786 1.51836 1.60855 1.80293 2.56106 2.62940 3.01570 3.14455 3.24221 3.68765 3.76700 3.85306 3.94003 3.97972 4.07801 4.11041 4.15959 4.25471 4.26789 4.29737 4.32081 4.45514 4.49661 4.57215 4.61525 4.63911 4.68284 4.71904 4.74450 4.80248 4.82840 4.88470 4.90532 4.97780 5.03484 5.09881 5.11243 5.16010 5.29574 5.33750 5.40349 5.45237 5.51997 5.55930 5.62989 5.69581 5.85034 5.98477 6.03017 6.12223 6.14591 6.17431 6.40697 6.56744 7.41558 8.70314 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.002210 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.144323 B =12664.065836 C =13846.738989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.065 0.935 4 C -0.095 4.095 5 C 0.094 3.906 6 H 0.067 0.933 7 N -0.680 5.680 8 C 0.075 3.925 9 C -0.086 4.086 10 C 0.009 3.991 11 C -0.620 4.620 12 H 0.051 0.949 13 C -0.043 4.043 14 N -0.938 5.938 15 Si 1.119 2.881 16 H -0.283 1.283 17 H -0.268 1.268 18 H -0.268 1.268 19 C 0.037 3.963 20 N -0.538 5.538 21 C 0.095 3.905 22 C -0.087 4.087 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.121 4.121 28 C 0.062 3.938 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.344 0.656 35 H 0.023 0.977 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.051 0.949 39 H -0.013 1.013 40 H -0.013 1.013 41 H 0.254 0.746 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.129 0.871 51 H 0.083 0.917 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 1.912 23.525 31.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.133 4.133 5 C -0.016 4.016 6 H 0.085 0.915 7 N -0.310 5.310 8 C -0.054 4.054 9 C -0.124 4.124 10 C -0.028 4.028 11 C -0.657 4.657 12 H 0.069 0.931 13 C -0.240 4.240 14 N -0.576 5.576 15 Si 0.940 3.060 16 H -0.208 1.208 17 H -0.193 1.193 18 H -0.193 1.193 19 C -0.093 4.093 20 N -0.262 5.262 21 C -0.033 4.033 22 C -0.087 4.087 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.066 4.066 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.006 0.994 40 H 0.005 0.995 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.136 0.864 47 H 0.152 0.848 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.147 0.853 51 H 0.101 0.899 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.974 2.589 22.000 29.827 hybrid contribution -0.477 -0.754 1.772 1.984 sum -20.451 1.835 23.772 31.412 Atomic orbital electron populations 1.21721 0.93227 1.02313 1.02397 1.21109 0.96404 0.99452 0.93452 0.91611 1.21563 0.92937 1.00912 0.97924 1.21565 0.96323 0.97305 0.86445 0.91463 1.60639 1.22064 1.10466 1.37881 1.21828 0.88241 0.99252 0.96095 1.21261 0.95569 0.98681 0.96871 1.19141 0.93702 0.94869 0.95117 1.22515 1.02604 1.24690 1.15922 0.93053 1.27533 0.94129 0.97554 1.04746 1.70921 1.39184 1.24549 1.22902 0.82918 0.75944 0.75002 0.72146 1.20822 1.19258 1.19338 1.22746 0.99567 0.95650 0.91331 1.61857 1.09127 1.54082 1.01142 1.21024 1.00350 0.94649 0.87232 1.19775 0.95418 0.97152 0.96376 1.21179 0.99766 0.95192 0.97381 1.21411 0.97905 0.99553 0.95923 1.21470 0.94239 0.98499 1.00285 1.21416 1.00374 0.95342 0.97207 1.21222 0.96248 1.00205 0.96236 1.22249 0.86162 0.99120 0.99047 0.92207 0.91779 0.92119 0.91687 0.91765 0.83783 0.95869 0.92320 0.92918 0.93033 0.99438 0.99469 0.93633 0.94198 0.92091 0.93361 0.90476 0.86446 0.84802 0.84150 0.84030 0.85345 0.89873 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.20 71.98 0.66 -1.24 16 2 C -0.08 -1.51 2.88 -10.75 -0.03 -1.54 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.10 -1.97 4.89 30.67 0.15 -1.82 16 5 C 0.09 2.32 2.63 44.97 0.12 2.44 16 6 H 0.07 1.91 7.80 -2.39 -0.02 1.89 16 7 N -0.68 -19.46 6.25 -491.32 -3.07 -22.54 16 8 C 0.08 2.64 5.48 86.30 0.47 3.11 16 9 C -0.09 -3.66 5.41 30.59 0.17 -3.49 16 10 C 0.01 0.50 4.28 29.85 0.13 0.63 16 11 C -0.62 -36.62 9.11 25.60 0.23 -36.39 16 12 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 13 C -0.04 -2.55 5.46 84.66 0.46 -2.09 16 14 N -0.94 -59.86 13.65 21.45 0.29 -59.56 16 15 Si 1.12 51.30 29.90 68.60 2.05 53.35 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 C 0.04 0.83 4.71 86.33 0.41 1.24 16 20 N -0.54 -11.10 4.65 -900.95 -4.19 -15.29 16 21 C 0.09 1.77 5.12 85.56 0.44 2.21 16 22 C -0.09 -1.58 4.89 -19.86 -0.10 -1.68 16 23 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 24 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 27 C -0.12 -1.85 7.88 22.27 0.18 -1.67 16 28 C 0.06 1.08 4.45 86.33 0.38 1.47 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.34 9.07 8.46 -89.69 -0.76 8.31 16 35 H 0.02 0.82 7.47 -2.39 -0.02 0.80 16 36 H 0.06 2.16 8.06 -2.38 -0.02 2.14 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 39 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 40 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 41 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 42 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 43 H 0.06 1.54 7.36 -2.38 -0.02 1.52 16 44 H 0.05 0.83 8.06 -2.39 -0.02 0.81 16 45 H 0.08 1.51 7.92 -2.39 -0.02 1.49 16 46 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 50 H 0.13 1.60 7.95 -2.91 -0.02 1.58 16 51 H 0.08 1.41 5.75 -2.39 -0.01 1.40 16 52 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -67.50 405.48 -0.16 -67.66 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.20 Total: 21.97 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 4.56 Total: -45.60 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -6.96 Total: -97.39 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -67.50 -0.16 -67.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274325146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.691 kcal (2) G-P(sol) polarization free energy of solvation -67.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds