Wall clock time and date at job start Tue Mar 31 2020 11:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49910 * 2 1 4 4 C 1.53121 * 109.53425 * 120.05529 * 2 1 3 5 5 C 1.53121 * 109.15668 * 177.57578 * 4 2 1 6 6 H 1.09000 * 109.50276 * 62.37170 * 5 4 2 7 7 N 1.46907 * 109.50088 * 182.44655 * 5 4 2 8 8 C 1.46902 * 110.99665 * 204.92091 * 7 5 4 9 9 C 1.53001 * 109.46901 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99923 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47093 * 90.00088 * 15 13 11 17 17 H 1.48495 * 109.46891 * 210.00496 * 15 13 11 18 18 H 1.48504 * 109.47189 * 330.00185 * 15 13 11 19 19 C 1.53038 * 109.31436 * 302.40633 * 5 4 2 20 20 N 1.46851 * 109.51787 * 59.15638 * 19 5 4 21 21 C 1.46907 * 110.99567 * 174.15967 * 20 19 5 22 22 C 1.50697 * 109.46721 * 170.00507 * 21 20 19 23 23 C 1.38242 * 119.99733 * 269.72619 * 22 21 20 24 24 C 1.38232 * 119.99512 * 179.81619 * 23 22 21 25 25 C 1.38230 * 120.00521 * 0.41580 * 24 23 22 26 26 C 1.38237 * 119.99798 * 359.81735 * 25 24 23 27 27 C 1.38231 * 120.00047 * 359.97438 * 26 25 24 28 28 C 1.46846 * 111.20251 * 298.25974 * 20 19 5 29 29 H 1.08995 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47439 * 300.07899 * 1 2 3 31 31 H 1.09001 * 109.46480 * 60.08098 * 1 2 3 32 32 H 1.09007 * 109.49221 * 57.69520 * 4 2 1 33 33 H 1.08999 * 109.56113 * 297.50186 * 4 2 1 34 34 H 1.00895 * 110.99712 * 80.97062 * 7 5 4 35 35 H 1.09001 * 109.46712 * 60.00151 * 8 7 5 36 36 H 1.09002 * 109.47411 * 300.00262 * 8 7 5 37 37 H 1.09001 * 109.46652 * 60.00371 * 9 8 7 38 38 H 1.08992 * 109.47514 * 300.00460 * 9 8 7 39 39 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 40 40 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 41 41 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 42 42 H 1.08995 * 109.46494 * 179.17229 * 19 5 4 43 43 H 1.08999 * 109.46107 * 299.14596 * 19 5 4 44 44 H 1.09005 * 109.47152 * 290.00340 * 21 20 19 45 45 H 1.08992 * 109.46791 * 50.00668 * 21 20 19 46 46 H 1.08000 * 119.99991 * 359.97438 * 23 22 21 47 47 H 1.08006 * 119.99787 * 180.20916 * 24 23 22 48 48 H 1.08000 * 120.00089 * 179.79211 * 25 24 23 49 49 H 1.08002 * 119.99613 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.00019 * 179.97438 * 27 26 25 51 51 H 1.09001 * 109.45867 * 181.76219 * 28 20 19 52 52 H 1.08996 * 109.46108 * 301.72678 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7227 1.2490 5 6 3.5720 -0.7709 1.2100 6 1 3.9686 0.2442 1.2295 7 7 4.0692 -1.5140 2.3757 8 6 5.4398 -1.1076 2.7136 9 6 5.9217 -1.9009 3.9299 10 6 7.3490 -1.4772 4.2822 11 6 7.8239 -2.2590 5.4799 12 1 7.1729 -2.9856 5.9431 13 6 9.0894 -2.0465 5.9843 14 7 9.5040 -2.7291 7.0291 15 14 10.2156 -0.7901 5.1826 16 1 10.0093 0.5362 5.8181 17 1 11.6293 -1.2090 5.3588 18 1 9.9033 -0.6986 3.7337 19 6 4.0238 -1.4715 -0.0733 20 7 3.5093 -0.7408 -1.2385 21 6 4.0373 -1.3041 -2.4883 22 6 3.3075 -0.6990 -3.6597 23 6 2.1636 -1.3026 -4.1480 24 6 1.4920 -0.7455 -5.2201 25 6 1.9689 0.4104 -5.8094 26 6 3.1154 1.0113 -5.3242 27 6 3.7846 0.4566 -4.2494 28 6 2.0410 -0.7230 -1.2482 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3632 0.5126 -0.8908 32 1 1.6461 -1.7382 1.2697 33 1 1.7171 -0.1859 2.1403 34 1 4.0152 -2.5094 2.2197 35 1 5.4563 -0.0426 2.9451 36 1 6.0968 -1.3056 1.8666 37 1 5.9051 -2.9660 3.6988 38 1 5.2647 -1.7026 4.7766 39 1 8.0063 -1.6752 3.4356 40 1 7.3652 -0.4121 4.5135 41 1 10.3941 -2.5793 7.3842 42 1 5.1129 -1.4941 -0.1107 43 1 3.6389 -2.4912 -0.0851 44 1 5.1010 -1.0792 -2.5674 45 1 3.8933 -2.3845 -2.4892 46 1 1.7933 -2.2080 -3.6902 47 1 0.5965 -1.2152 -5.5994 48 1 1.4461 0.8438 -6.6491 49 1 3.4882 1.9142 -5.7849 50 1 4.6806 0.9258 -3.8706 51 1 1.6901 -0.2019 -2.1390 52 1 1.6654 -1.7461 -1.2546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274325152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:12 Heat of formation + Delta-G solvation = 7.839595 kcal Electronic energy + Delta-G solvation = -26151.170556 eV Core-core repulsion = 22728.142543 eV Total energy + Delta-G solvation = -3423.028013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29811 -38.98914 -36.28475 -34.80263 -33.60399 -32.03115 -31.36362 -31.22461 -29.19562 -27.12141 -26.45284 -26.04485 -23.15929 -22.84152 -22.34938 -21.34445 -21.03200 -20.21046 -19.62922 -17.10224 -16.70863 -16.20794 -15.98842 -15.71424 -15.24955 -14.88133 -14.76265 -14.56157 -14.19140 -14.08539 -13.92942 -13.70719 -13.29367 -13.06232 -12.84913 -12.75287 -12.67152 -12.55010 -12.22732 -11.99679 -11.87369 -11.61699 -11.35076 -11.28962 -11.19985 -10.94260 -10.79983 -10.74883 -10.62042 -10.52239 -9.92215 -9.70169 -9.51220 -9.23005 -9.14377 -9.13798 -8.52061 -8.50766 -8.21090 -6.01188 -3.98759 0.97779 1.07754 3.32877 3.33024 3.39957 3.43844 3.78904 4.26700 4.36490 4.47947 4.50045 4.66701 4.68752 4.75376 4.78991 4.86411 4.92477 4.99842 5.13776 5.16539 5.26482 5.31396 5.32709 5.37850 5.39264 5.47056 5.53112 5.59211 5.60868 5.66887 5.72399 5.75471 5.80535 5.86968 5.92131 5.95968 6.11464 6.18370 6.20714 6.23419 6.25564 6.30300 6.57124 6.59834 6.65297 6.80201 6.83929 6.95059 7.27234 7.38074 7.47271 7.59043 7.83593 8.58211 9.04449 9.61539 11.12364 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.002299 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.463987 B =12177.562368 C =13212.464871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.102 4.102 5 C 0.091 3.909 6 H 0.084 0.916 7 N -0.682 5.682 8 C 0.057 3.943 9 C -0.100 4.100 10 C -0.013 4.013 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.028 3.972 20 N -0.528 5.528 21 C 0.092 3.908 22 C -0.080 4.080 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.099 4.099 28 C 0.057 3.943 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.337 0.663 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.080 0.920 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.019 5.965 -26.729 33.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.020 4.020 6 H 0.102 0.898 7 N -0.311 5.311 8 C -0.072 4.072 9 C -0.138 4.138 10 C -0.051 4.051 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.137 4.137 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.102 4.102 20 N -0.252 5.252 21 C -0.035 4.035 22 C -0.080 4.080 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.070 4.070 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.142 0.858 51 H 0.098 0.902 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -18.968 6.833 -26.081 32.965 hybrid contribution 0.995 -0.710 -1.135 1.668 sum -17.973 6.123 -27.216 33.185 Atomic orbital electron populations 1.21761 0.94913 1.01706 1.01765 1.21158 0.95107 1.00410 0.94215 0.90438 1.21625 0.94499 1.00505 0.97401 1.21585 0.95231 0.98464 0.86696 0.89762 1.60699 1.24071 1.09879 1.36473 1.22190 0.86675 1.00510 0.97782 1.21446 0.98342 0.98334 0.95647 1.19541 0.92158 0.96437 0.96931 1.21157 1.00006 1.22420 1.12038 0.91048 1.25052 0.97974 0.95915 0.94728 1.69921 1.19031 1.41667 1.23782 0.86761 0.79884 0.81974 0.80551 1.20289 1.21465 1.19079 1.22936 1.00424 0.95427 0.91364 1.62025 1.08376 1.53695 1.01096 1.21105 0.99117 0.96342 0.86981 1.19769 0.95781 0.95953 0.96528 1.21084 0.95279 1.00008 0.96871 1.21109 0.99987 0.96425 0.96485 1.21161 0.96680 0.96101 1.00056 1.21179 0.95803 1.00014 0.96903 1.21070 1.00068 0.95065 0.95516 1.22291 0.87026 0.98798 0.98925 0.92868 0.92256 0.92812 0.92361 0.90990 0.84496 0.91425 0.95766 0.93121 0.91965 0.96900 0.97043 0.92806 0.90718 0.94784 0.89722 0.93993 0.86445 0.86159 0.86218 0.86051 0.85791 0.90163 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.09 -0.84 2.88 -90.54 -0.26 -1.10 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.10 -1.08 4.90 -26.61 -0.13 -1.21 16 5 C 0.09 1.09 2.63 -67.63 -0.18 0.91 16 6 H 0.08 1.11 7.80 -51.93 -0.41 0.71 16 7 N -0.68 -9.46 6.25 -106.63 -0.67 -10.13 16 8 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 9 C -0.10 -1.99 5.41 -26.73 -0.14 -2.14 16 10 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 11 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 19 C 0.03 0.31 4.68 -3.83 -0.02 0.29 16 20 N -0.53 -5.37 4.80 -236.12 -1.13 -6.51 16 21 C 0.09 0.84 5.43 -4.97 -0.03 0.81 16 22 C -0.08 -0.70 4.11 -104.62 -0.43 -1.13 16 23 C -0.11 -0.91 7.82 -39.58 -0.31 -1.22 16 24 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 25 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 27 C -0.10 -0.84 9.70 -39.59 -0.38 -1.22 16 28 C 0.06 0.54 3.87 -3.84 -0.01 0.52 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.34 4.44 8.46 -39.29 -0.33 4.11 16 35 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.02 0.39 7.46 -51.93 -0.39 0.00 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 0.88 7.46 -51.93 -0.39 0.49 16 43 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 44 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 45 H 0.04 0.38 8.02 -51.93 -0.42 -0.04 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 51 H 0.08 0.77 5.65 -51.93 -0.29 0.47 16 52 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -30.86 402.41 -12.70 -43.56 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -9.75 Total: 0.39 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -3.31 Total: -23.23 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -1.03 Total: -44.20 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.86 -12.70 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274325152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.401 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds