Wall clock time and date at job start Tue Mar 31 2020 11:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49910 * 2 1 4 4 C 1.53121 * 109.53425 * 120.05529 * 2 1 3 5 5 C 1.53121 * 109.15668 * 177.57578 * 4 2 1 6 6 H 1.09000 * 109.50276 * 62.37170 * 5 4 2 7 7 N 1.46907 * 109.50088 * 182.44655 * 5 4 2 8 8 C 1.46902 * 110.99665 * 204.92091 * 7 5 4 9 9 C 1.53001 * 109.46901 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99923 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47093 * 90.00088 * 15 13 11 17 17 H 1.48495 * 109.46891 * 210.00496 * 15 13 11 18 18 H 1.48504 * 109.47189 * 330.00185 * 15 13 11 19 19 C 1.53038 * 109.31436 * 302.40633 * 5 4 2 20 20 N 1.46851 * 109.51787 * 59.15638 * 19 5 4 21 21 C 1.46907 * 110.99567 * 174.15967 * 20 19 5 22 22 C 1.50697 * 109.46721 * 170.00507 * 21 20 19 23 23 C 1.38242 * 119.99733 * 269.72619 * 22 21 20 24 24 C 1.38232 * 119.99512 * 179.81619 * 23 22 21 25 25 C 1.38230 * 120.00521 * 0.41580 * 24 23 22 26 26 C 1.38237 * 119.99798 * 359.81735 * 25 24 23 27 27 C 1.38231 * 120.00047 * 359.97438 * 26 25 24 28 28 C 1.46846 * 111.20251 * 298.25974 * 20 19 5 29 29 H 1.08995 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47439 * 300.07899 * 1 2 3 31 31 H 1.09001 * 109.46480 * 60.08098 * 1 2 3 32 32 H 1.09007 * 109.49221 * 57.69520 * 4 2 1 33 33 H 1.08999 * 109.56113 * 297.50186 * 4 2 1 34 34 H 1.00895 * 110.99712 * 80.97062 * 7 5 4 35 35 H 1.09001 * 109.46712 * 60.00151 * 8 7 5 36 36 H 1.09002 * 109.47411 * 300.00262 * 8 7 5 37 37 H 1.09001 * 109.46652 * 60.00371 * 9 8 7 38 38 H 1.08992 * 109.47514 * 300.00460 * 9 8 7 39 39 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 40 40 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 41 41 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 42 42 H 1.08995 * 109.46494 * 179.17229 * 19 5 4 43 43 H 1.08999 * 109.46107 * 299.14596 * 19 5 4 44 44 H 1.09005 * 109.47152 * 290.00340 * 21 20 19 45 45 H 1.08992 * 109.46791 * 50.00668 * 21 20 19 46 46 H 1.08000 * 119.99991 * 359.97438 * 23 22 21 47 47 H 1.08006 * 119.99787 * 180.20916 * 24 23 22 48 48 H 1.08000 * 120.00089 * 179.79211 * 25 24 23 49 49 H 1.08002 * 119.99613 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.00019 * 179.97438 * 27 26 25 51 51 H 1.09001 * 109.45867 * 181.76219 * 28 20 19 52 52 H 1.08996 * 109.46108 * 301.72678 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7227 1.2490 5 6 3.5720 -0.7709 1.2100 6 1 3.9686 0.2442 1.2295 7 7 4.0692 -1.5140 2.3757 8 6 5.4398 -1.1076 2.7136 9 6 5.9217 -1.9009 3.9299 10 6 7.3490 -1.4772 4.2822 11 6 7.8239 -2.2590 5.4799 12 1 7.1729 -2.9856 5.9431 13 6 9.0894 -2.0465 5.9843 14 7 9.5040 -2.7291 7.0291 15 14 10.2156 -0.7901 5.1826 16 1 10.0093 0.5362 5.8181 17 1 11.6293 -1.2090 5.3588 18 1 9.9033 -0.6986 3.7337 19 6 4.0238 -1.4715 -0.0733 20 7 3.5093 -0.7408 -1.2385 21 6 4.0373 -1.3041 -2.4883 22 6 3.3075 -0.6990 -3.6597 23 6 2.1636 -1.3026 -4.1480 24 6 1.4920 -0.7455 -5.2201 25 6 1.9689 0.4104 -5.8094 26 6 3.1154 1.0113 -5.3242 27 6 3.7846 0.4566 -4.2494 28 6 2.0410 -0.7230 -1.2482 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3632 0.5126 -0.8908 32 1 1.6461 -1.7382 1.2697 33 1 1.7171 -0.1859 2.1403 34 1 4.0152 -2.5094 2.2197 35 1 5.4563 -0.0426 2.9451 36 1 6.0968 -1.3056 1.8666 37 1 5.9051 -2.9660 3.6988 38 1 5.2647 -1.7026 4.7766 39 1 8.0063 -1.6752 3.4356 40 1 7.3652 -0.4121 4.5135 41 1 10.3941 -2.5793 7.3842 42 1 5.1129 -1.4941 -0.1107 43 1 3.6389 -2.4912 -0.0851 44 1 5.1010 -1.0792 -2.5674 45 1 3.8933 -2.3845 -2.4892 46 1 1.7933 -2.2080 -3.6902 47 1 0.5965 -1.2152 -5.5994 48 1 1.4461 0.8438 -6.6491 49 1 3.4882 1.9142 -5.7849 50 1 4.6806 0.9258 -3.8706 51 1 1.6901 -0.2019 -2.1390 52 1 1.6654 -1.7461 -1.2546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274325152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:11 Heat of formation + Delta-G solvation = -10.038028 kcal Electronic energy + Delta-G solvation = -26151.945788 eV Core-core repulsion = 22728.142543 eV Total energy + Delta-G solvation = -3423.803245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02123 -39.71027 -37.48132 -35.74702 -35.22712 -33.66114 -32.28052 -31.79698 -30.49077 -27.83102 -27.68555 -27.19554 -24.17595 -23.71017 -23.42645 -22.26199 -21.95915 -21.59201 -20.60727 -18.89774 -17.67807 -17.01164 -16.90924 -16.42436 -16.40331 -16.10873 -15.79246 -15.60739 -15.36774 -15.18705 -14.86642 -14.68941 -14.37176 -14.23803 -13.84175 -13.67305 -13.56615 -13.52690 -13.37041 -13.23396 -12.84482 -12.73340 -12.61656 -12.52328 -12.07536 -11.92821 -11.86568 -11.80457 -11.75670 -11.56712 -11.52165 -11.38559 -11.31208 -11.05698 -10.76300 -9.79621 -9.75035 -9.38522 -9.22715 -8.29291 -6.33463 0.40303 0.51432 1.36091 1.37764 1.50020 2.36441 2.66598 3.03777 3.05803 3.29176 3.68991 3.81400 3.89737 3.96605 4.01360 4.11337 4.16672 4.21869 4.29064 4.31449 4.34610 4.36635 4.51374 4.54702 4.62346 4.66160 4.69546 4.71393 4.76395 4.80038 4.83241 4.87409 4.93612 4.98824 5.02866 5.10519 5.11045 5.15034 5.17226 5.30965 5.38037 5.46754 5.52475 5.56805 5.61963 5.63956 5.66601 5.70058 5.92502 6.05470 6.12166 6.19945 6.30264 6.47377 6.74780 7.30985 8.87617 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.002299 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.463987 B =12177.562368 C =13212.464871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.096 4.096 5 C 0.095 3.905 6 H 0.073 0.927 7 N -0.685 5.685 8 C 0.072 3.928 9 C -0.090 4.090 10 C -0.010 4.010 11 C -0.533 4.533 12 H 0.029 0.971 13 C 0.000 4.000 14 N -0.952 5.952 15 Si 0.954 3.046 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.246 1.246 19 C 0.035 3.965 20 N -0.535 5.535 21 C 0.094 3.906 22 C -0.092 4.092 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.113 4.113 28 C 0.063 3.937 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.266 0.734 42 H 0.066 0.934 43 H 0.036 0.964 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.123 0.877 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.123 0.877 51 H 0.081 0.919 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.856 7.355 -29.339 36.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.134 4.134 5 C -0.015 4.015 6 H 0.091 0.909 7 N -0.315 5.315 8 C -0.057 4.057 9 C -0.129 4.129 10 C -0.048 4.048 11 C -0.571 4.571 12 H 0.048 0.952 13 C -0.196 4.196 14 N -0.593 5.593 15 Si 0.777 3.223 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.169 1.169 19 C -0.094 4.094 20 N -0.259 5.259 21 C -0.033 4.033 22 C -0.092 4.092 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.132 4.132 28 C -0.064 4.064 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.061 0.939 46 H 0.141 0.859 47 H 0.157 0.843 48 H 0.158 0.842 49 H 0.155 0.845 50 H 0.141 0.859 51 H 0.099 0.901 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -19.832 8.221 -28.709 35.848 hybrid contribution 1.185 -1.206 -0.300 1.717 sum -18.647 7.015 -29.009 35.192 Atomic orbital electron populations 1.21722 0.93544 1.02147 1.02296 1.21119 0.96198 0.99605 0.93508 0.91320 1.21565 0.93350 1.00688 0.97828 1.21557 0.96034 0.97562 0.86395 0.90859 1.60640 1.22499 1.10467 1.37890 1.21899 0.88064 0.99636 0.96119 1.21265 0.95876 0.98726 0.96985 1.19489 0.94505 0.95923 0.94879 1.21519 0.99804 1.22166 1.13625 0.95218 1.26084 0.99915 0.98339 0.95306 1.70079 1.19837 1.43759 1.25640 0.85599 0.77274 0.78953 0.80447 1.19127 1.20932 1.16922 1.22781 0.99903 0.95442 0.91311 1.62009 1.08944 1.53742 1.01203 1.21078 0.99051 0.96377 0.86790 1.19777 0.96348 0.96400 0.96670 1.21211 0.95182 1.00294 0.97301 1.21391 1.00485 0.96474 0.96078 1.21473 0.96494 0.95958 1.00441 1.21428 0.95959 1.00583 0.96625 1.21197 1.00456 0.95342 0.96204 1.22243 0.86474 0.98825 0.98859 0.92456 0.92044 0.91998 0.92176 0.91655 0.83936 0.91434 0.95064 0.93456 0.93286 0.96231 0.96352 0.92517 0.91524 0.94563 0.90002 0.93904 0.85914 0.84290 0.84160 0.84528 0.85862 0.90067 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.20 71.98 0.66 -1.26 16 2 C -0.08 -1.46 2.88 -10.74 -0.03 -1.49 16 3 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.10 -1.91 4.90 30.68 0.15 -1.76 16 5 C 0.09 2.16 2.63 44.97 0.12 2.28 16 6 H 0.07 1.86 7.80 -2.39 -0.02 1.84 16 7 N -0.68 -18.31 6.25 -491.27 -3.07 -21.38 16 8 C 0.07 2.25 5.48 86.30 0.47 2.72 16 9 C -0.09 -3.60 5.41 30.59 0.17 -3.43 16 10 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 11 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 12 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 13 C 0.00 0.00 5.47 84.65 0.46 0.46 16 14 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 15 Si 0.95 45.08 27.47 68.60 1.88 46.96 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 19 C 0.04 0.74 4.68 86.33 0.40 1.14 16 20 N -0.53 -10.32 4.80 -900.94 -4.32 -14.64 16 21 C 0.09 1.65 5.43 85.55 0.46 2.11 16 22 C -0.09 -1.51 4.11 -19.86 -0.08 -1.59 16 23 C -0.12 -1.76 7.82 22.27 0.17 -1.59 16 24 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 25 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 26 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 27 C -0.11 -1.82 9.70 22.27 0.22 -1.60 16 28 C 0.06 1.10 3.87 86.32 0.33 1.43 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.34 8.64 8.46 -89.70 -0.76 7.88 16 35 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 36 H 0.03 0.94 7.46 -2.39 -0.02 0.93 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 40 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 41 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 42 H 0.07 1.50 7.46 -2.39 -0.02 1.49 16 43 H 0.04 0.74 8.12 -2.39 -0.02 0.72 16 44 H 0.08 1.44 8.09 -2.38 -0.02 1.42 16 45 H 0.04 0.73 8.02 -2.39 -0.02 0.71 16 46 H 0.12 1.58 8.06 -2.91 -0.02 1.55 16 47 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 48 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 49 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 50 H 0.12 1.89 8.06 -2.91 -0.02 1.86 16 51 H 0.08 1.42 5.65 -2.39 -0.01 1.41 16 52 H 0.03 0.53 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -66.84 402.41 -0.62 -67.46 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.04 Total: 20.76 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 4.55 Total: -38.47 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -7.10 Total: -96.72 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -66.84 -0.62 -67.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274325152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.425 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds