Wall clock time and date at job start Tue Mar 31 2020 11:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.53615 * 2 1 4 4 C 1.53126 * 109.50472 * 239.90281 * 2 1 3 5 5 C 1.53099 * 109.15071 * 297.71163 * 4 2 1 6 6 H 1.09009 * 109.50682 * 62.29317 * 5 4 2 7 7 N 1.46903 * 109.48797 * 182.39910 * 5 4 2 8 8 C 1.46901 * 111.00217 * 204.81623 * 7 5 4 9 9 C 1.53001 * 109.47069 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47033 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47512 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99159 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00317 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00185 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00039 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46884 * 120.00183 * 15 13 11 18 18 H 1.48494 * 109.47328 * 239.99946 * 15 13 11 19 19 C 1.53034 * 109.29509 * 302.33888 * 5 4 2 20 20 N 1.46847 * 109.51345 * 59.18740 * 19 5 4 21 21 C 1.46898 * 110.99897 * 174.16738 * 20 19 5 22 22 C 1.50704 * 109.46923 * 169.99458 * 21 20 19 23 23 C 1.38229 * 120.00366 * 269.72914 * 22 21 20 24 24 C 1.38236 * 120.00140 * 179.81643 * 23 22 21 25 25 C 1.38238 * 119.99834 * 0.38810 * 24 23 22 26 26 C 1.38233 * 120.00037 * 359.86520 * 25 24 23 27 27 C 1.38235 * 120.00172 * 359.95212 * 26 25 24 28 28 C 1.46854 * 111.19790 * 298.26320 * 20 19 5 29 29 H 1.08994 * 109.47174 * 299.90450 * 1 2 3 30 30 H 1.09006 * 109.47066 * 59.90188 * 1 2 3 31 31 H 1.09002 * 109.47314 * 179.90067 * 1 2 3 32 32 H 1.08990 * 109.52264 * 57.61826 * 4 2 1 33 33 H 1.09002 * 109.52383 * 177.74611 * 4 2 1 34 34 H 1.00895 * 111.00378 * 80.85475 * 7 5 4 35 35 H 1.09006 * 109.46844 * 299.99735 * 8 7 5 36 36 H 1.08998 * 109.47311 * 59.99715 * 8 7 5 37 37 H 1.09005 * 109.46681 * 299.98958 * 9 8 7 38 38 H 1.08998 * 109.47484 * 59.99580 * 9 8 7 39 39 H 1.09006 * 109.47032 * 299.99588 * 10 9 8 40 40 H 1.09004 * 109.47810 * 59.99383 * 10 9 8 41 41 H 0.96997 * 120.00337 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.46271 * 299.17460 * 19 5 4 43 43 H 1.08994 * 109.46242 * 179.19760 * 19 5 4 44 44 H 1.08992 * 109.47195 * 289.99926 * 21 20 19 45 45 H 1.09001 * 109.47336 * 50.00240 * 21 20 19 46 46 H 1.08000 * 120.00066 * 359.97438 * 23 22 21 47 47 H 1.07996 * 120.00146 * 180.22976 * 24 23 22 48 48 H 1.07999 * 120.00025 * 179.84249 * 25 24 23 49 49 H 1.07998 * 120.00132 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.00294 * 180.02562 * 27 26 25 51 51 H 1.08993 * 109.46229 * 181.76227 * 28 20 19 52 52 H 1.09008 * 109.45803 * 301.73838 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2488 5 6 1.5750 -2.1816 -1.2106 6 1 0.4856 -2.2159 -1.2297 7 7 2.1095 -2.8978 -2.3765 8 6 1.2698 -4.0549 -2.7140 9 6 1.8574 -4.7741 -3.9299 10 6 0.9832 -5.9797 -4.2810 11 6 1.5616 -6.6878 -5.4790 12 1 2.4624 -6.3148 -5.9437 13 6 0.9408 -7.8115 -5.9818 14 7 -0.1564 -8.2653 -5.4161 15 14 1.6573 -8.6887 -7.4672 16 1 2.8855 -7.9835 -7.9137 17 1 1.9958 -10.0874 -7.1003 18 1 0.6606 -8.6932 -8.5679 19 6 2.0846 -2.8420 0.0724 20 7 1.5675 -2.1135 1.2379 21 6 1.9222 -2.7996 2.4874 22 6 1.5956 -1.9100 3.6591 23 6 2.5463 -1.0335 4.1477 24 6 2.2455 -0.2147 5.2201 25 6 0.9964 -0.2782 5.8090 26 6 0.0474 -1.1585 5.3239 27 6 0.3470 -1.9745 4.2491 28 6 2.0409 -0.7234 1.2481 29 1 -0.3633 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8892 31 1 -0.3634 -1.0277 -0.0018 32 1 1.6443 -0.2375 -2.1398 33 1 3.1305 -0.6892 -1.2696 34 1 3.0662 -3.1782 -2.2213 35 1 1.2384 -4.7404 -1.8670 36 1 0.2599 -3.7161 -2.9448 37 1 1.8891 -4.0889 -4.7771 38 1 2.8672 -5.1131 -3.6987 39 1 0.9519 -6.6648 -3.4338 40 1 -0.0268 -5.6412 -4.5121 41 1 -0.5929 -9.0561 -5.7696 42 1 3.1743 -2.8197 0.0843 43 1 1.7421 -3.8761 0.1093 44 1 1.3552 -3.7271 2.5662 45 1 2.9887 -3.0246 2.4883 46 1 3.5234 -0.9865 3.6899 47 1 2.9870 0.4727 5.5994 48 1 0.7622 0.3596 6.6485 49 1 -0.9282 -1.2084 5.7842 50 1 -0.3945 -2.6620 3.8697 51 1 1.6669 -0.2190 2.1389 52 1 3.1309 -0.7111 1.2543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274325155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:14 Heat of formation + Delta-G solvation = 7.593297 kcal Electronic energy + Delta-G solvation = -26285.820054 eV Core-core repulsion = 22862.781360 eV Total energy + Delta-G solvation = -3423.038693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32203 -39.01767 -36.17134 -34.64299 -33.45626 -31.81407 -31.26134 -31.14872 -28.79132 -27.04908 -26.50383 -25.72731 -23.12630 -22.82603 -22.68028 -21.88048 -20.96705 -20.15671 -18.75157 -17.05978 -16.44521 -16.29346 -15.83952 -15.61785 -15.13407 -14.91451 -14.54732 -14.41682 -14.31951 -13.89697 -13.79085 -13.68481 -13.42055 -13.18842 -12.90537 -12.71081 -12.56704 -12.24781 -11.81832 -11.73182 -11.61325 -11.45676 -11.31558 -11.22724 -11.20410 -10.86179 -10.72117 -10.55747 -10.54031 -10.46670 -10.23085 -9.67358 -9.29352 -9.19042 -9.09368 -9.00512 -8.43363 -8.32170 -8.12093 -5.97090 -3.98975 1.01923 1.11649 3.32878 3.37919 3.40187 3.44804 3.86188 4.35559 4.42268 4.50048 4.54364 4.70292 4.76506 4.79331 4.81967 4.92264 5.02584 5.06352 5.18295 5.20689 5.32639 5.38695 5.39554 5.43385 5.54245 5.54917 5.64593 5.70589 5.71795 5.74573 5.77055 5.90081 5.90417 6.01485 6.04776 6.13903 6.15647 6.22203 6.30100 6.33981 6.36253 6.43829 6.68444 6.74489 6.77027 6.86720 6.93336 7.17083 7.41213 7.66171 7.72163 7.87160 8.03745 8.47132 9.08572 9.64910 11.14381 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002127 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.535871 B =13158.154568 C =13739.864556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.103 4.103 5 C 0.090 3.910 6 H 0.088 0.912 7 N -0.683 5.683 8 C 0.060 3.940 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.028 3.972 20 N -0.523 5.523 21 C 0.091 3.909 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.098 4.098 28 C 0.056 3.944 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.335 0.665 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.080 0.920 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 18.838 22.943 29.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.142 4.142 5 C -0.020 4.020 6 H 0.106 0.894 7 N -0.313 5.313 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.102 4.102 20 N -0.248 5.248 21 C -0.036 4.036 22 C -0.079 4.079 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.071 4.071 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.142 0.858 51 H 0.099 0.901 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.719 19.104 22.395 29.562 hybrid contribution 1.490 -1.268 0.053 1.957 sum 4.209 17.836 22.448 28.978 Atomic orbital electron populations 1.21739 0.94428 1.02835 1.00556 1.21179 0.97001 0.98381 0.94197 0.91121 1.21597 1.00219 0.94900 0.97451 1.21621 1.00432 0.93292 0.86678 0.89409 1.60728 1.06037 1.28051 1.36448 1.22159 0.97080 0.89794 0.97838 1.21625 0.99294 0.98191 0.95403 1.19068 0.94825 0.91403 0.96290 1.21302 1.10349 1.10601 1.13323 0.92639 1.25036 0.95020 0.97349 0.97209 1.69975 1.18687 1.23917 1.41015 0.86544 0.79147 0.79483 0.82884 1.19739 1.21086 1.21019 1.22945 0.97238 0.98603 0.91388 1.62022 1.59650 1.02079 1.01004 1.21112 0.99179 0.96275 0.87040 1.19769 0.94296 0.97335 0.96488 1.21078 0.99109 0.96233 0.96884 1.21103 0.96990 0.99433 0.96516 1.21155 0.93836 0.98988 1.00074 1.21176 0.99421 0.96369 0.96918 1.21076 0.96034 0.99081 0.95472 1.22269 0.96812 0.89087 0.98979 0.93440 0.93296 0.91198 0.91029 0.92506 0.84723 0.95773 0.91434 0.92583 0.93774 0.96846 0.96566 0.93114 0.94901 0.90658 0.89691 0.94061 0.86480 0.86210 0.86262 0.86075 0.85762 0.90139 0.95363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.75 37.16 0.33 -1.07 16 2 C -0.09 -0.86 3.21 -90.54 -0.29 -1.15 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.10 -1.14 5.12 -26.62 -0.14 -1.28 16 5 C 0.09 1.12 2.27 -67.64 -0.15 0.97 16 6 H 0.09 1.21 6.24 -51.92 -0.32 0.88 16 7 N -0.68 -9.93 6.25 -106.64 -0.67 -10.59 16 8 C 0.06 1.04 5.49 -3.82 -0.02 1.02 16 9 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.03 0.32 4.68 -3.84 -0.02 0.30 16 20 N -0.52 -5.42 4.08 -236.11 -0.96 -6.38 16 21 C 0.09 0.86 5.43 -4.98 -0.03 0.83 16 22 C -0.08 -0.71 4.11 -104.62 -0.43 -1.14 16 23 C -0.11 -0.94 7.81 -39.59 -0.31 -1.25 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 28 C 0.06 0.54 4.02 -3.83 -0.02 0.53 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.80 6.01 -51.93 -0.31 0.49 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.34 4.61 8.46 -39.29 -0.33 4.28 16 35 H 0.02 0.42 7.45 -51.93 -0.39 0.03 16 36 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 43 H 0.07 0.94 7.46 -51.93 -0.39 0.55 16 44 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 45 H 0.04 0.38 8.02 -51.93 -0.42 -0.03 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 51 H 0.08 0.79 5.65 -51.93 -0.29 0.50 16 52 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 LS Contribution 401.48 15.07 6.05 6.05 Total: -1.00 -30.25 401.48 -12.81 -43.06 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -9.60 Total: 0.63 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -3.35 Total: -23.13 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.89 Total: -43.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.25 -12.81 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274325155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.657 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds