Wall clock time and date at job start Tue Mar 31 2020 11:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.53615 * 2 1 4 4 C 1.53126 * 109.50472 * 239.90281 * 2 1 3 5 5 C 1.53099 * 109.15071 * 297.71163 * 4 2 1 6 6 H 1.09009 * 109.50682 * 62.29317 * 5 4 2 7 7 N 1.46903 * 109.48797 * 182.39910 * 5 4 2 8 8 C 1.46901 * 111.00217 * 204.81623 * 7 5 4 9 9 C 1.53001 * 109.47069 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47033 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47512 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99159 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00317 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00185 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00039 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46884 * 120.00183 * 15 13 11 18 18 H 1.48494 * 109.47328 * 239.99946 * 15 13 11 19 19 C 1.53034 * 109.29509 * 302.33888 * 5 4 2 20 20 N 1.46847 * 109.51345 * 59.18740 * 19 5 4 21 21 C 1.46898 * 110.99897 * 174.16738 * 20 19 5 22 22 C 1.50704 * 109.46923 * 169.99458 * 21 20 19 23 23 C 1.38229 * 120.00366 * 269.72914 * 22 21 20 24 24 C 1.38236 * 120.00140 * 179.81643 * 23 22 21 25 25 C 1.38238 * 119.99834 * 0.38810 * 24 23 22 26 26 C 1.38233 * 120.00037 * 359.86520 * 25 24 23 27 27 C 1.38235 * 120.00172 * 359.95212 * 26 25 24 28 28 C 1.46854 * 111.19790 * 298.26320 * 20 19 5 29 29 H 1.08994 * 109.47174 * 299.90450 * 1 2 3 30 30 H 1.09006 * 109.47066 * 59.90188 * 1 2 3 31 31 H 1.09002 * 109.47314 * 179.90067 * 1 2 3 32 32 H 1.08990 * 109.52264 * 57.61826 * 4 2 1 33 33 H 1.09002 * 109.52383 * 177.74611 * 4 2 1 34 34 H 1.00895 * 111.00378 * 80.85475 * 7 5 4 35 35 H 1.09006 * 109.46844 * 299.99735 * 8 7 5 36 36 H 1.08998 * 109.47311 * 59.99715 * 8 7 5 37 37 H 1.09005 * 109.46681 * 299.98958 * 9 8 7 38 38 H 1.08998 * 109.47484 * 59.99580 * 9 8 7 39 39 H 1.09006 * 109.47032 * 299.99588 * 10 9 8 40 40 H 1.09004 * 109.47810 * 59.99383 * 10 9 8 41 41 H 0.96997 * 120.00337 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.46271 * 299.17460 * 19 5 4 43 43 H 1.08994 * 109.46242 * 179.19760 * 19 5 4 44 44 H 1.08992 * 109.47195 * 289.99926 * 21 20 19 45 45 H 1.09001 * 109.47336 * 50.00240 * 21 20 19 46 46 H 1.08000 * 120.00066 * 359.97438 * 23 22 21 47 47 H 1.07996 * 120.00146 * 180.22976 * 24 23 22 48 48 H 1.07999 * 120.00025 * 179.84249 * 25 24 23 49 49 H 1.07998 * 120.00132 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.00294 * 180.02562 * 27 26 25 51 51 H 1.08993 * 109.46229 * 181.76227 * 28 20 19 52 52 H 1.09008 * 109.45803 * 301.73838 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2488 5 6 1.5750 -2.1816 -1.2106 6 1 0.4856 -2.2159 -1.2297 7 7 2.1095 -2.8978 -2.3765 8 6 1.2698 -4.0549 -2.7140 9 6 1.8574 -4.7741 -3.9299 10 6 0.9832 -5.9797 -4.2810 11 6 1.5616 -6.6878 -5.4790 12 1 2.4624 -6.3148 -5.9437 13 6 0.9408 -7.8115 -5.9818 14 7 -0.1564 -8.2653 -5.4161 15 14 1.6573 -8.6887 -7.4672 16 1 2.8855 -7.9835 -7.9137 17 1 1.9958 -10.0874 -7.1003 18 1 0.6606 -8.6932 -8.5679 19 6 2.0846 -2.8420 0.0724 20 7 1.5675 -2.1135 1.2379 21 6 1.9222 -2.7996 2.4874 22 6 1.5956 -1.9100 3.6591 23 6 2.5463 -1.0335 4.1477 24 6 2.2455 -0.2147 5.2201 25 6 0.9964 -0.2782 5.8090 26 6 0.0474 -1.1585 5.3239 27 6 0.3470 -1.9745 4.2491 28 6 2.0409 -0.7234 1.2481 29 1 -0.3633 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8892 31 1 -0.3634 -1.0277 -0.0018 32 1 1.6443 -0.2375 -2.1398 33 1 3.1305 -0.6892 -1.2696 34 1 3.0662 -3.1782 -2.2213 35 1 1.2384 -4.7404 -1.8670 36 1 0.2599 -3.7161 -2.9448 37 1 1.8891 -4.0889 -4.7771 38 1 2.8672 -5.1131 -3.6987 39 1 0.9519 -6.6648 -3.4338 40 1 -0.0268 -5.6412 -4.5121 41 1 -0.5929 -9.0561 -5.7696 42 1 3.1743 -2.8197 0.0843 43 1 1.7421 -3.8761 0.1093 44 1 1.3552 -3.7271 2.5662 45 1 2.9887 -3.0246 2.4883 46 1 3.5234 -0.9865 3.6899 47 1 2.9870 0.4727 5.5994 48 1 0.7622 0.3596 6.6485 49 1 -0.9282 -1.2084 5.7842 50 1 -0.3945 -2.6620 3.8697 51 1 1.6669 -0.2190 2.1389 52 1 3.1309 -0.7111 1.2543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274325155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:13 Heat of formation + Delta-G solvation = -8.649133 kcal Electronic energy + Delta-G solvation = -26286.524378 eV Core-core repulsion = 22862.781360 eV Total energy + Delta-G solvation = -3423.743018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10216 -39.76254 -37.44698 -35.74782 -35.11984 -33.35601 -32.15899 -31.78719 -30.16752 -27.84222 -27.51282 -27.28293 -24.46274 -23.81355 -23.43175 -22.92528 -22.03811 -21.59980 -19.68043 -18.47696 -17.70664 -17.26144 -16.82394 -16.53954 -16.31678 -16.08946 -15.93294 -15.42837 -15.30969 -14.95989 -14.78858 -14.48478 -14.28667 -14.24549 -14.20693 -13.70397 -13.58720 -13.39892 -13.29905 -13.20405 -12.75947 -12.62624 -12.47890 -12.47034 -12.28255 -12.11619 -11.90578 -11.85398 -11.60781 -11.59220 -11.45720 -11.31061 -11.26937 -10.91808 -10.56235 -9.78713 -9.73233 -9.36937 -9.19203 -8.20383 -6.31435 0.41436 0.52305 1.39606 1.40077 1.53730 2.40692 2.68947 3.06327 3.12567 3.31941 3.70169 3.82573 3.88333 3.97534 4.04874 4.15069 4.17957 4.22732 4.29179 4.31651 4.35581 4.41198 4.49764 4.57214 4.64287 4.68960 4.70493 4.76429 4.80025 4.82734 4.87315 4.90049 4.98322 5.08275 5.11488 5.15005 5.18165 5.20727 5.25320 5.28145 5.41250 5.52259 5.56342 5.58867 5.64734 5.71241 5.75279 5.85843 5.93214 6.06495 6.13061 6.19296 6.28384 6.49591 6.85829 7.37789 8.91762 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002127 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.535871 B =13158.154568 C =13739.864556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.088 0.912 4 C -0.097 4.097 5 C 0.094 3.906 6 H 0.073 0.927 7 N -0.682 5.682 8 C 0.075 3.925 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.542 4.542 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.036 3.964 20 N -0.529 5.529 21 C 0.094 3.906 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.113 4.113 28 C 0.062 3.938 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.342 0.658 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.051 0.949 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.263 0.737 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.124 0.876 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.136 0.864 50 H 0.121 0.879 51 H 0.082 0.918 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 20.206 23.497 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.106 0.894 4 C -0.135 4.135 5 C -0.016 4.016 6 H 0.091 0.909 7 N -0.312 5.312 8 C -0.054 4.054 9 C -0.130 4.130 10 C -0.013 4.013 11 C -0.580 4.580 12 H 0.078 0.922 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.094 4.094 20 N -0.254 5.254 21 C -0.034 4.034 22 C -0.090 4.090 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.132 4.132 28 C -0.066 4.066 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.161 0.839 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.142 0.858 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.154 0.846 50 H 0.139 0.861 51 H 0.100 0.900 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.117 20.490 22.964 31.051 hybrid contribution 1.015 -1.667 -0.048 1.952 sum 5.132 18.823 22.916 30.096 Atomic orbital electron populations 1.21683 0.94796 1.01762 1.00902 1.21185 0.96602 0.99100 0.93479 0.89416 1.21537 1.00499 0.93561 0.97938 1.21596 0.99557 0.94149 0.86344 0.90887 1.60659 1.06051 1.26518 1.37947 1.21825 0.96812 0.90516 0.96237 1.21372 0.98605 0.96215 0.96785 1.18973 0.94461 0.92905 0.94920 1.21732 1.10714 1.11274 1.14245 0.92210 1.26016 0.95329 0.98225 1.00523 1.70106 1.20050 1.24535 1.42747 0.85374 0.78659 0.78193 0.78673 1.18570 1.20301 1.20336 1.22768 0.97357 0.97841 0.91456 1.61988 1.59886 1.02527 1.00972 1.21074 0.99141 0.96210 0.86926 1.19757 0.94769 0.97873 0.96581 1.21209 0.99225 0.96233 0.97292 1.21393 0.97561 0.99369 0.96070 1.21468 0.93613 0.98844 1.00455 1.21415 1.00372 0.96169 0.96622 1.21186 0.96121 0.99680 0.96223 1.22234 0.96993 0.88429 0.98918 0.92888 0.93136 0.92956 0.91641 0.91916 0.83912 0.95951 0.92353 0.92913 0.93073 0.99128 0.99147 0.92775 0.94384 0.92050 0.90314 0.93853 0.85806 0.84242 0.84167 0.84624 0.86076 0.89956 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.75 71.98 0.63 -1.95 16 2 C -0.08 -1.50 3.21 -10.74 -0.03 -1.54 16 3 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.10 -2.01 5.12 30.67 0.16 -1.86 16 5 C 0.09 2.29 2.27 44.96 0.10 2.39 16 6 H 0.07 2.03 6.24 -2.38 -0.01 2.02 16 7 N -0.68 -19.47 6.25 -491.31 -3.07 -22.54 16 8 C 0.08 2.65 5.49 86.30 0.47 3.12 16 9 C -0.09 -3.88 5.41 30.59 0.17 -3.72 16 10 C 0.03 1.36 4.97 29.85 0.15 1.51 16 11 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 12 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 13 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 14 N -0.93 -57.90 13.29 21.44 0.28 -57.62 16 15 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 C 0.04 0.80 4.68 86.32 0.40 1.20 16 20 N -0.53 -10.71 4.08 -900.93 -3.68 -14.39 16 21 C 0.09 1.74 5.43 85.56 0.46 2.21 16 22 C -0.09 -1.55 4.11 -19.86 -0.08 -1.63 16 23 C -0.12 -1.82 7.81 22.27 0.17 -1.65 16 24 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 25 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 27 C -0.11 -1.94 9.70 22.27 0.22 -1.73 16 28 C 0.06 1.10 4.02 86.32 0.35 1.44 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.05 1.19 6.01 -2.39 -0.01 1.18 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.34 9.05 8.46 -89.70 -0.76 8.29 16 35 H 0.02 0.79 7.45 -2.38 -0.02 0.77 16 36 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 37 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 40 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.04 0.82 8.12 -2.39 -0.02 0.80 16 43 H 0.06 1.55 7.46 -2.39 -0.02 1.53 16 44 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 45 H 0.04 0.78 8.02 -2.39 -0.02 0.76 16 46 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 48 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 49 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 50 H 0.12 2.04 8.06 -2.91 -0.02 2.01 16 51 H 0.08 1.48 5.65 -2.39 -0.01 1.46 16 52 H 0.03 0.56 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -64.95 401.48 0.19 -64.75 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.10 Total: 20.41 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 4.53 Total: -37.69 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -6.47 Total: -94.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.95 0.19 -64.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274325155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.105 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds