Wall clock time and date at job start Tue Mar 31 2020 11:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46627 * 2 1 4 4 H 1.08999 * 109.47109 * 304.43662 * 3 2 1 5 5 C 1.50699 * 109.46876 * 184.44021 * 3 2 1 6 6 H 1.07996 * 119.99834 * 239.99968 * 5 3 2 7 7 C 1.37884 * 120.00061 * 59.99644 * 5 3 2 8 8 N 1.31506 * 119.99828 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 119.99857 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47184 * 60.00202 * 9 7 5 11 11 H 1.48507 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47546 * 300.00336 * 9 7 5 13 13 N 1.46898 * 109.47314 * 64.44089 * 3 2 1 14 14 C 1.46903 * 111.00025 * 208.67484 * 13 3 2 15 15 H 1.09004 * 109.49718 * 32.07462 * 14 13 3 16 16 C 1.53123 * 109.50344 * 152.14640 * 14 13 3 17 17 C 1.53199 * 109.11810 * 177.59735 * 16 14 13 18 18 H 1.09005 * 109.49037 * 62.31839 * 17 16 14 19 19 C 1.52998 * 109.52627 * 182.40731 * 17 16 14 20 20 C 1.53037 * 109.29913 * 302.37789 * 17 16 14 21 21 N 1.46847 * 109.52651 * 59.17860 * 20 17 16 22 22 C 1.46903 * 111.00319 * 174.16361 * 21 20 17 23 23 C 1.50704 * 109.46858 * 294.20790 * 22 21 20 24 24 C 1.38242 * 119.99804 * 269.72874 * 23 22 21 25 25 C 1.38232 * 119.99465 * 179.78840 * 24 23 22 26 26 C 1.38231 * 120.00464 * 0.43574 * 25 24 23 27 27 C 1.38239 * 119.99925 * 359.81520 * 26 25 24 28 28 C 1.38233 * 119.99870 * 359.97438 * 27 26 25 29 29 C 1.46850 * 111.19607 * 298.25708 * 21 20 17 30 30 H 1.08996 * 109.47328 * 54.95744 * 1 2 3 31 31 H 1.09006 * 109.47062 * 174.95334 * 1 2 3 32 32 H 1.09007 * 109.47255 * 294.95001 * 1 2 3 33 33 H 1.08989 * 109.47112 * 239.99990 * 2 1 3 34 34 H 1.09002 * 109.47069 * 119.99298 * 2 1 3 35 35 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 36 36 H 1.00898 * 110.99920 * 84.72183 * 13 3 2 37 37 H 1.08997 * 109.52305 * 297.54638 * 16 14 13 38 38 H 1.09001 * 109.51483 * 57.73481 * 16 14 13 39 39 H 1.09006 * 109.46881 * 179.84205 * 19 17 16 40 40 H 1.08994 * 109.47183 * 299.84073 * 19 17 16 41 41 H 1.08994 * 109.46887 * 59.84742 * 19 17 16 42 42 H 1.08995 * 109.46599 * 299.15836 * 20 17 16 43 43 H 1.09004 * 109.45406 * 179.18581 * 20 17 16 44 44 H 1.08995 * 109.47189 * 54.20369 * 22 21 20 45 45 H 1.08994 * 109.46920 * 174.20752 * 22 21 20 46 46 H 1.07999 * 119.99682 * 359.97438 * 24 23 22 47 47 H 1.08001 * 119.99669 * 180.27360 * 25 24 23 48 48 H 1.08001 * 119.99907 * 179.83199 * 26 25 24 49 49 H 1.07997 * 119.99937 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.00011 * 180.02562 * 28 27 26 51 51 H 1.09006 * 109.46358 * 301.72926 * 29 21 20 52 52 H 1.08999 * 109.45566 * 181.75442 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6131 1.9788 -0.8476 5 6 3.5429 1.4441 -0.1100 6 1 4.1409 1.8912 0.6702 7 6 4.1544 0.8745 -1.2067 8 7 3.4261 0.3305 -2.1569 9 14 6.0174 0.8770 -1.3433 10 1 6.5994 0.1469 -0.1886 11 1 6.4219 0.2093 -2.6066 12 1 6.5119 2.2773 -1.3437 13 7 1.6397 2.1034 1.2494 14 6 1.4778 3.5500 1.0514 15 1 1.1299 3.7416 0.0363 16 6 0.4543 4.0917 2.0532 17 6 0.3367 5.6093 1.8794 18 1 -0.0290 5.8333 0.8773 19 6 -0.6394 6.1687 2.9164 20 6 1.7130 6.2490 2.0758 21 7 2.6552 5.6976 1.0936 22 6 3.9502 6.3879 1.1612 23 6 3.7774 7.8228 0.7340 24 6 3.9285 8.1712 -0.5952 25 6 3.7657 9.4866 -0.9876 26 6 3.4607 10.4551 -0.0496 27 6 3.3148 10.1075 1.2804 28 6 3.4733 8.7914 1.6722 29 6 2.8209 4.2494 1.2718 30 1 -0.3634 0.5900 -0.8413 31 1 -0.3633 -1.0237 -0.0904 32 1 -0.3634 0.4335 0.9318 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.8564 -0.0699 -2.9286 36 1 2.3001 1.9112 1.9877 37 1 -0.5147 3.6270 1.8712 38 1 0.7829 3.8658 3.0676 39 1 -0.7202 7.2488 2.7937 40 1 -1.6194 5.7127 2.7759 41 1 -0.2738 5.9432 3.9181 42 1 2.0721 6.0363 3.0827 43 1 1.6349 7.3275 1.9384 44 1 4.3260 6.3561 2.1838 45 1 4.6601 5.8942 0.4977 46 1 4.1707 7.4151 -1.3274 47 1 3.8793 9.7581 -2.0268 48 1 3.3363 11.4833 -0.3559 49 1 3.0770 10.8643 2.0133 50 1 3.3589 8.5198 2.7112 51 1 3.1748 4.0460 2.2826 52 1 3.5477 3.8758 0.5505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274398242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:52 Heat of formation + Delta-G solvation = 10.559493 kcal Electronic energy + Delta-G solvation = -27518.517147 eV Core-core repulsion = 24095.607078 eV Total energy + Delta-G solvation = -3422.910070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73443 -38.57304 -35.95140 -34.39314 -32.75744 -31.52593 -30.98405 -30.87873 -28.40471 -26.65941 -26.05014 -25.71180 -22.96139 -22.53551 -22.32577 -20.90742 -20.60099 -19.79171 -19.04770 -16.79980 -16.53244 -15.69201 -15.36916 -15.23632 -14.89988 -14.55476 -14.15801 -14.09351 -13.90228 -13.47889 -13.39599 -13.15226 -12.81291 -12.62289 -12.50534 -12.33415 -12.21656 -12.08571 -11.60237 -11.45538 -11.28656 -11.10506 -11.07960 -10.98321 -10.88090 -10.70177 -10.62512 -10.38294 -10.21324 -10.17268 -9.97710 -9.54436 -9.29785 -8.97470 -8.90617 -8.77746 -8.36320 -8.00882 -7.26113 -5.99155 -4.11407 1.32764 1.40067 3.26629 3.32640 3.34396 3.70312 4.31584 4.38732 4.78543 4.83440 4.94144 4.97067 5.08970 5.12235 5.25719 5.31530 5.34735 5.48610 5.56227 5.59909 5.63233 5.69398 5.73246 5.75367 5.86325 5.96343 6.01503 6.04914 6.06337 6.10958 6.21188 6.37566 6.41935 6.42541 6.46272 6.47842 6.49615 6.53878 6.67300 6.74352 6.82500 6.88257 6.99090 7.18739 7.20030 7.34937 7.38951 7.50127 7.62074 7.79243 8.11705 8.16223 8.36730 8.68109 9.01114 9.55561 11.01173 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.004210 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.848735 B = 6648.771787 C = 8495.087359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.104 3.896 15 H 0.076 0.924 16 C -0.102 4.102 17 C -0.089 4.089 18 H 0.075 0.925 19 C -0.142 4.142 20 C 0.060 3.940 21 N -0.528 5.528 22 C 0.091 3.909 23 C -0.068 4.068 24 C -0.097 4.097 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.116 4.116 29 C 0.031 3.969 30 H 0.036 0.964 31 H 0.023 0.977 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.326 0.674 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.116 0.884 51 H 0.022 0.978 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 16.110 7.179 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.007 4.007 15 H 0.094 0.906 16 C -0.140 4.140 17 C -0.109 4.109 18 H 0.094 0.906 19 C -0.200 4.200 20 C -0.068 4.068 21 N -0.252 5.252 22 C -0.037 4.037 23 C -0.068 4.068 24 C -0.116 4.116 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.142 4.142 28 C -0.135 4.135 29 C -0.098 4.098 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.134 0.866 51 H 0.040 0.960 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.434 15.895 6.433 17.488 hybrid contribution 2.455 0.143 0.579 2.526 sum -0.979 16.038 7.012 17.531 Atomic orbital electron populations 1.21686 0.99072 0.98189 1.00340 1.21502 0.92033 0.99390 1.01544 1.19214 0.92740 0.91103 0.86078 0.94971 1.21820 0.92610 1.38080 1.05666 0.92864 1.24905 0.97636 0.95017 0.95750 1.69861 1.34865 1.37931 1.09445 0.86787 0.86419 0.78153 0.77375 1.20376 1.21256 1.20441 1.60995 1.52899 1.06565 1.10524 1.21413 0.92136 0.88328 0.98861 0.90572 1.21676 1.00018 0.93135 0.99175 1.21158 0.94139 0.95818 0.99760 0.90627 1.21760 0.99169 1.00277 0.98782 1.22199 0.92728 0.99193 0.92702 1.61933 1.08889 1.04146 1.50219 1.21049 0.92160 0.90665 0.99779 1.19827 0.98458 0.94903 0.93644 1.21112 0.98751 0.96159 0.95563 1.21153 1.00139 0.93249 0.99425 1.21098 1.00731 0.99207 0.93422 1.21062 1.00964 0.96097 0.96114 1.21047 1.00289 0.92979 0.99149 1.23132 1.01057 0.85734 0.99845 0.94488 0.95789 0.93513 0.89274 0.95205 0.92854 0.85702 0.91726 0.92974 0.93111 0.92527 0.93079 0.95674 0.90995 0.94450 0.89721 0.85757 0.86235 0.86484 0.86441 0.86569 0.95957 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.65 16 3 C 0.22 5.17 2.00 -68.86 -0.14 5.03 16 4 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 5 C -0.54 -13.95 7.23 -34.44 -0.25 -14.20 16 6 H 0.05 1.35 6.83 -52.49 -0.36 0.99 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.50 11.30 55.43 0.63 -23.88 16 9 Si 0.88 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -13.78 5.58 -100.87 -0.56 -14.35 16 14 C 0.10 1.89 2.64 -67.63 -0.18 1.72 16 15 H 0.08 1.58 7.33 -51.93 -0.38 1.20 16 16 C -0.10 -1.56 4.91 -26.57 -0.13 -1.69 16 17 C -0.09 -1.21 2.88 -90.50 -0.26 -1.47 16 18 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.14 -1.57 9.20 37.16 0.34 -1.22 16 20 C 0.06 0.81 4.44 -3.83 -0.02 0.80 16 21 N -0.53 -8.17 4.65 -236.11 -1.10 -9.27 16 22 C 0.09 1.28 5.12 -4.97 -0.03 1.26 16 23 C -0.07 -0.88 4.89 -104.62 -0.51 -1.39 16 24 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 25 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 26 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.12 -1.33 7.88 -39.58 -0.31 -1.65 16 29 C 0.03 0.55 4.38 -3.84 -0.02 0.53 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.92 7.88 -51.92 -0.41 0.51 16 33 H 0.09 2.36 5.96 -51.94 -0.31 2.05 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.33 6.60 8.01 -39.29 -0.31 6.29 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.94 5.75 -51.93 -0.30 0.64 16 44 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 45 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 46 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 50 H 0.12 1.20 7.95 -52.48 -0.42 0.78 16 51 H 0.02 0.39 8.11 -51.93 -0.42 -0.04 16 52 H 0.10 1.97 6.11 -51.93 -0.32 1.65 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -26.58 397.49 -12.51 -39.09 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -9.49 Total: 9.09 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.95 Total: -22.37 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -1.03 Total: -47.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -26.58 -12.51 -39.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274398242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.646 kcal (2) G-P(sol) polarization free energy of solvation -26.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds