Wall clock time and date at job start Tue Mar 31 2020 11:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46627 * 2 1 4 4 H 1.08999 * 109.47109 * 304.43662 * 3 2 1 5 5 C 1.50699 * 109.46876 * 184.44021 * 3 2 1 6 6 H 1.07996 * 119.99834 * 239.99968 * 5 3 2 7 7 C 1.37884 * 120.00061 * 59.99644 * 5 3 2 8 8 N 1.31506 * 119.99828 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 119.99857 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47184 * 60.00202 * 9 7 5 11 11 H 1.48507 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47546 * 300.00336 * 9 7 5 13 13 N 1.46898 * 109.47314 * 64.44089 * 3 2 1 14 14 C 1.46903 * 111.00025 * 208.67484 * 13 3 2 15 15 H 1.09004 * 109.49718 * 32.07462 * 14 13 3 16 16 C 1.53123 * 109.50344 * 152.14640 * 14 13 3 17 17 C 1.53199 * 109.11810 * 177.59735 * 16 14 13 18 18 H 1.09005 * 109.49037 * 62.31839 * 17 16 14 19 19 C 1.52998 * 109.52627 * 182.40731 * 17 16 14 20 20 C 1.53037 * 109.29913 * 302.37789 * 17 16 14 21 21 N 1.46847 * 109.52651 * 59.17860 * 20 17 16 22 22 C 1.46903 * 111.00319 * 174.16361 * 21 20 17 23 23 C 1.50704 * 109.46858 * 294.20790 * 22 21 20 24 24 C 1.38242 * 119.99804 * 269.72874 * 23 22 21 25 25 C 1.38232 * 119.99465 * 179.78840 * 24 23 22 26 26 C 1.38231 * 120.00464 * 0.43574 * 25 24 23 27 27 C 1.38239 * 119.99925 * 359.81520 * 26 25 24 28 28 C 1.38233 * 119.99870 * 359.97438 * 27 26 25 29 29 C 1.46850 * 111.19607 * 298.25708 * 21 20 17 30 30 H 1.08996 * 109.47328 * 54.95744 * 1 2 3 31 31 H 1.09006 * 109.47062 * 174.95334 * 1 2 3 32 32 H 1.09007 * 109.47255 * 294.95001 * 1 2 3 33 33 H 1.08989 * 109.47112 * 239.99990 * 2 1 3 34 34 H 1.09002 * 109.47069 * 119.99298 * 2 1 3 35 35 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 36 36 H 1.00898 * 110.99920 * 84.72183 * 13 3 2 37 37 H 1.08997 * 109.52305 * 297.54638 * 16 14 13 38 38 H 1.09001 * 109.51483 * 57.73481 * 16 14 13 39 39 H 1.09006 * 109.46881 * 179.84205 * 19 17 16 40 40 H 1.08994 * 109.47183 * 299.84073 * 19 17 16 41 41 H 1.08994 * 109.46887 * 59.84742 * 19 17 16 42 42 H 1.08995 * 109.46599 * 299.15836 * 20 17 16 43 43 H 1.09004 * 109.45406 * 179.18581 * 20 17 16 44 44 H 1.08995 * 109.47189 * 54.20369 * 22 21 20 45 45 H 1.08994 * 109.46920 * 174.20752 * 22 21 20 46 46 H 1.07999 * 119.99682 * 359.97438 * 24 23 22 47 47 H 1.08001 * 119.99669 * 180.27360 * 25 24 23 48 48 H 1.08001 * 119.99907 * 179.83199 * 26 25 24 49 49 H 1.07997 * 119.99937 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.00011 * 180.02562 * 28 27 26 51 51 H 1.09006 * 109.46358 * 301.72926 * 29 21 20 52 52 H 1.08999 * 109.45566 * 181.75442 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6131 1.9788 -0.8476 5 6 3.5429 1.4441 -0.1100 6 1 4.1409 1.8912 0.6702 7 6 4.1544 0.8745 -1.2067 8 7 3.4261 0.3305 -2.1569 9 14 6.0174 0.8770 -1.3433 10 1 6.5994 0.1469 -0.1886 11 1 6.4219 0.2093 -2.6066 12 1 6.5119 2.2773 -1.3437 13 7 1.6397 2.1034 1.2494 14 6 1.4778 3.5500 1.0514 15 1 1.1299 3.7416 0.0363 16 6 0.4543 4.0917 2.0532 17 6 0.3367 5.6093 1.8794 18 1 -0.0290 5.8333 0.8773 19 6 -0.6394 6.1687 2.9164 20 6 1.7130 6.2490 2.0758 21 7 2.6552 5.6976 1.0936 22 6 3.9502 6.3879 1.1612 23 6 3.7774 7.8228 0.7340 24 6 3.9285 8.1712 -0.5952 25 6 3.7657 9.4866 -0.9876 26 6 3.4607 10.4551 -0.0496 27 6 3.3148 10.1075 1.2804 28 6 3.4733 8.7914 1.6722 29 6 2.8209 4.2494 1.2718 30 1 -0.3634 0.5900 -0.8413 31 1 -0.3633 -1.0237 -0.0904 32 1 -0.3634 0.4335 0.9318 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.8564 -0.0699 -2.9286 36 1 2.3001 1.9112 1.9877 37 1 -0.5147 3.6270 1.8712 38 1 0.7829 3.8658 3.0676 39 1 -0.7202 7.2488 2.7937 40 1 -1.6194 5.7127 2.7759 41 1 -0.2738 5.9432 3.9181 42 1 2.0721 6.0363 3.0827 43 1 1.6349 7.3275 1.9384 44 1 4.3260 6.3561 2.1838 45 1 4.6601 5.8942 0.4977 46 1 4.1707 7.4151 -1.3274 47 1 3.8793 9.7581 -2.0268 48 1 3.3363 11.4833 -0.3559 49 1 3.0770 10.8643 2.0133 50 1 3.3589 8.5198 2.7112 51 1 3.1748 4.0460 2.2826 52 1 3.5477 3.8758 0.5505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274398242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:51 Heat of formation + Delta-G solvation = -2.789658 kcal Electronic energy + Delta-G solvation = -27519.096010 eV Core-core repulsion = 24095.607078 eV Total energy + Delta-G solvation = -3423.488932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84563 -39.69332 -37.63978 -35.56596 -34.45780 -33.24214 -32.12938 -31.77397 -29.97779 -27.75165 -27.68629 -27.04904 -24.66752 -23.65783 -23.39235 -22.15207 -21.72416 -21.54461 -20.49133 -18.54922 -17.63406 -16.94465 -16.82446 -16.45703 -16.22329 -15.72033 -15.68683 -15.36857 -15.19440 -14.83673 -14.73644 -14.47688 -14.24807 -13.76281 -13.65825 -13.48334 -13.42063 -13.30964 -13.14388 -13.05775 -12.86475 -12.68876 -12.54048 -12.52767 -12.17268 -12.00087 -11.93658 -11.83292 -11.71239 -11.51908 -11.45731 -11.34775 -11.00014 -10.80600 -10.42447 -9.77908 -9.70249 -9.24104 -9.00951 -8.03222 -6.23179 0.44150 0.52952 1.37462 1.38457 1.44942 2.40088 2.73676 3.16934 3.19018 3.62273 3.77489 3.89614 4.02613 4.06415 4.17432 4.19792 4.23054 4.31849 4.35374 4.41395 4.56526 4.62541 4.67054 4.67682 4.72778 4.77708 4.78105 4.78910 4.87115 4.92190 4.95803 5.01732 5.12465 5.14218 5.18483 5.21352 5.24036 5.36074 5.43757 5.47288 5.54756 5.56764 5.58721 5.64355 5.66087 5.74840 5.79335 6.05551 6.13569 6.16344 6.19802 6.24635 6.45590 6.85044 7.05328 7.47136 8.93852 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.004210 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.848735 B = 6648.771787 C = 8495.087359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.227 3.773 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.672 5.672 14 C 0.106 3.894 15 H 0.043 0.957 16 C -0.091 4.091 17 C -0.086 4.086 18 H 0.060 0.940 19 C -0.135 4.135 20 C 0.064 3.936 21 N -0.540 5.540 22 C 0.094 3.906 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.120 4.120 29 C 0.045 3.955 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.329 0.671 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.135 0.865 48 H 0.145 0.855 49 H 0.146 0.854 50 H 0.129 0.871 51 H 0.027 0.973 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 18.400 9.254 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.300 5.300 14 C -0.005 4.005 15 H 0.062 0.938 16 C -0.129 4.129 17 C -0.105 4.105 18 H 0.079 0.921 19 C -0.192 4.192 20 C -0.063 4.063 21 N -0.264 5.264 22 C -0.033 4.033 23 C -0.084 4.084 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.139 4.139 29 C -0.084 4.084 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.127 0.873 47 H 0.153 0.847 48 H 0.163 0.837 49 H 0.164 0.836 50 H 0.147 0.853 51 H 0.046 0.954 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.896 18.200 8.525 20.472 hybrid contribution 2.594 -0.487 -0.094 2.641 sum -1.302 17.713 8.431 19.661 Atomic orbital electron populations 1.21541 0.96567 0.99409 1.00517 1.21367 0.94269 0.98550 0.99947 1.18938 0.91675 0.91262 0.86327 0.98833 1.22110 0.93726 1.37301 1.05543 0.92836 1.25592 1.01504 0.95000 0.95658 1.69998 1.36287 1.38860 1.09881 0.85864 0.81833 0.78051 0.77374 1.19690 1.21144 1.20281 1.60960 1.52382 1.07859 1.08833 1.21394 0.93514 0.87330 0.98226 0.93836 1.21566 0.98566 0.94470 0.98278 1.21140 0.94924 0.94396 1.00076 0.92129 1.21695 0.98444 1.01044 0.98044 1.22230 0.92030 0.99663 0.92407 1.61886 1.10182 1.02872 1.51478 1.20991 0.91071 0.91431 0.99803 1.19755 1.00124 0.94358 0.94149 1.21162 1.00256 0.96968 0.95552 1.21387 0.99839 0.92691 1.00701 1.21472 0.99324 1.00267 0.93255 1.21430 0.99649 0.96128 0.96816 1.21214 1.00012 0.93240 0.99395 1.22778 0.99429 0.87397 0.98784 0.95376 0.93818 0.92360 0.92230 0.95281 0.93066 0.85424 0.91902 0.92054 0.91684 0.92008 0.92159 0.94840 0.89827 0.93552 0.91692 0.87269 0.84742 0.83718 0.83588 0.85270 0.95436 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.73 71.98 0.70 -4.34 16 2 C -0.10 -4.96 5.45 30.60 0.17 -4.80 16 3 C 0.23 11.27 2.00 44.17 0.09 11.36 16 4 H -0.01 -0.36 7.33 -2.39 -0.02 -0.38 16 5 C -0.55 -29.13 7.23 25.60 0.19 -28.95 16 6 H 0.05 2.79 6.83 -2.91 -0.02 2.77 16 7 C 0.02 1.23 5.29 84.66 0.45 1.67 16 8 N -0.91 -52.40 11.30 21.45 0.24 -52.15 16 9 Si 0.94 43.54 29.54 68.60 2.03 45.57 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 N -0.67 -27.75 5.58 -473.03 -2.64 -30.39 16 14 C 0.11 3.99 2.64 44.97 0.12 4.11 16 15 H 0.04 1.91 7.33 -2.38 -0.02 1.90 16 16 C -0.09 -2.69 4.91 30.70 0.15 -2.54 16 17 C -0.09 -2.20 2.88 -10.72 -0.03 -2.23 16 18 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 19 C -0.13 -2.56 9.20 71.98 0.66 -1.90 16 20 C 0.06 1.65 4.44 86.33 0.38 2.03 16 21 N -0.54 -16.94 4.65 -900.93 -4.19 -21.13 16 22 C 0.09 2.71 5.12 85.56 0.44 3.15 16 23 C -0.08 -2.13 4.89 -19.86 -0.10 -2.23 16 24 C -0.12 -3.14 9.70 22.27 0.22 -2.92 16 25 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 26 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 27 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 28 C -0.12 -2.50 7.88 22.27 0.18 -2.32 16 29 C 0.05 1.65 4.38 86.32 0.38 2.03 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.06 2.24 7.88 -2.38 -0.02 2.22 16 33 H 0.06 3.26 5.96 -2.39 -0.01 3.24 16 34 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.33 13.38 8.01 -89.70 -0.72 12.66 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.99 5.75 -2.38 -0.01 1.98 16 44 H 0.05 1.22 8.07 -2.39 -0.02 1.20 16 45 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 46 H 0.11 3.04 8.06 -2.91 -0.02 3.01 16 47 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 48 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 49 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 50 H 0.13 2.30 7.95 -2.91 -0.02 2.27 16 51 H 0.03 0.96 8.11 -2.38 -0.02 0.94 16 52 H 0.06 2.56 6.11 -2.39 -0.01 2.55 16 Total: -1.00 -59.34 397.49 0.24 -59.09 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.15 Total: 33.28 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 4.65 Total: -34.28 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -6.59 Total: -103.67 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -59.34 0.24 -59.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274398242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.305 kcal (2) G-P(sol) polarization free energy of solvation -59.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds