Wall clock time and date at job start Tue Mar 31 2020 11:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47404 * 2 1 4 4 C 1.53005 * 109.47131 * 120.00136 * 2 1 3 5 5 C 1.50696 * 109.47079 * 183.53744 * 4 2 1 6 6 H 1.07998 * 120.00675 * 5.03562 * 5 4 2 7 7 C 1.37883 * 119.99748 * 185.03718 * 5 4 2 8 8 N 1.31512 * 120.00111 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99960 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46682 * 90.00130 * 9 7 5 11 11 H 1.48495 * 109.47079 * 209.99888 * 9 7 5 12 12 H 1.48497 * 109.47441 * 330.00353 * 9 7 5 13 13 N 1.46898 * 109.47349 * 239.99913 * 2 1 3 14 14 C 1.44183 * 111.00099 * 308.18828 * 13 2 1 15 15 C 1.54318 * 112.61466 * 217.51135 * 14 13 2 16 16 C 1.54304 * 111.73348 * 318.91156 * 15 14 13 17 17 H 1.09008 * 108.85407 * 79.72587 * 16 15 14 18 18 C 1.53000 * 108.77541 * 198.16936 * 16 15 14 19 19 N 1.44178 * 112.61147 * 318.91801 * 16 15 14 20 20 C 1.46894 * 111.00424 * 217.51522 * 19 16 15 21 21 C 1.50697 * 109.47196 * 171.41507 * 20 19 16 22 22 C 1.38235 * 120.00282 * 269.73096 * 21 20 19 23 23 C 1.38243 * 119.99833 * 179.78808 * 22 21 20 24 24 C 1.38236 * 119.99694 * 0.44168 * 23 22 21 25 25 C 1.38233 * 120.00515 * 359.81119 * 24 23 22 26 26 C 1.38232 * 119.99797 * 359.97438 * 25 24 23 27 27 C 1.48087 * 109.89554 * 94.34295 * 19 16 15 28 28 C 1.46093 * 112.16187 * 279.65001 * 27 19 16 29 29 H 1.08997 * 109.47025 * 185.70369 * 1 2 3 30 30 H 1.09001 * 109.47295 * 305.70556 * 1 2 3 31 31 H 1.09003 * 109.47008 * 65.70600 * 1 2 3 32 32 H 1.09000 * 109.46720 * 303.54089 * 4 2 1 33 33 H 1.09002 * 109.46970 * 63.53134 * 4 2 1 34 34 H 0.96998 * 120.00327 * 180.02562 * 8 7 5 35 35 H 1.08998 * 108.84902 * 338.32287 * 14 13 2 36 36 H 1.08996 * 108.85151 * 96.70186 * 14 13 2 37 37 H 1.09001 * 109.02685 * 198.33046 * 15 14 13 38 38 H 1.09000 * 108.96900 * 79.45584 * 15 14 13 39 39 H 1.09000 * 109.47506 * 183.03420 * 18 16 15 40 40 H 1.09003 * 109.46930 * 303.03186 * 18 16 15 41 41 H 1.08993 * 109.47511 * 63.03114 * 18 16 15 42 42 H 1.08997 * 109.47768 * 291.42093 * 20 19 16 43 43 H 1.09005 * 109.46869 * 51.41827 * 20 19 16 44 44 H 1.07993 * 120.00370 * 359.97438 * 22 21 20 45 45 H 1.07997 * 119.99902 * 180.27294 * 23 22 21 46 46 H 1.07999 * 119.99791 * 179.83566 * 24 23 22 47 47 H 1.08000 * 120.00290 * 179.97438 * 25 24 23 48 48 H 1.07998 * 120.00508 * 180.02562 * 26 25 24 49 49 H 1.08999 * 108.94097 * 158.95269 * 27 19 16 50 50 H 1.09001 * 108.93717 * 40.33639 * 27 19 16 51 51 H 1.08997 * 108.94353 * 299.99767 * 28 27 19 52 52 H 1.08998 * 108.94167 * 181.37402 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5444 -0.6458 1.2939 6 1 4.0782 -0.0663 0.5552 7 6 4.2394 -1.3167 2.2778 8 7 3.5895 -2.0228 3.1769 9 14 6.1043 -1.2238 2.3327 10 1 6.5179 -0.0714 3.1731 11 1 6.6456 -2.4790 2.9128 12 1 6.6319 -1.0469 0.9559 13 7 2.0197 -0.6925 -1.1994 14 6 1.4074 -1.9910 -1.3325 15 6 2.3859 -3.0562 -1.8706 16 6 3.2751 -2.4963 -3.0005 17 1 4.0853 -1.9173 -2.5570 18 6 3.8750 -3.6674 -3.7812 19 7 2.5453 -1.6526 -3.9139 20 6 3.0075 -1.8477 -5.2945 21 6 2.0900 -1.1156 -6.2396 22 6 0.9867 -1.7586 -6.7688 23 6 0.1426 -1.0855 -7.6323 24 6 0.4071 0.2277 -7.9736 25 6 1.5132 0.8691 -7.4485 26 6 2.3548 0.1975 -6.5816 27 6 2.6770 -0.2353 -3.5054 28 6 1.7664 0.1115 -2.4169 29 1 -0.3633 -1.0226 0.1021 30 1 -0.3634 0.5998 0.8345 31 1 -0.3633 0.4228 -0.9367 32 1 1.6257 -0.2454 2.1381 33 1 1.7292 -1.7656 1.2181 34 1 4.0784 -2.4945 3.8693 35 1 1.0416 -2.3096 -0.3565 36 1 0.5613 -1.9131 -2.0152 37 1 1.8149 -3.9020 -2.2536 38 1 3.0219 -3.3977 -1.0539 39 1 4.5481 -3.2857 -4.5488 40 1 4.4296 -4.3124 -3.0996 41 1 3.0746 -4.2387 -4.2513 42 1 4.0204 -1.4586 -5.3971 43 1 3.0010 -2.9113 -5.5329 44 1 0.7824 -2.7858 -6.5054 45 1 -0.7218 -1.5865 -8.0424 46 1 -0.2508 0.7527 -8.6503 47 1 1.7200 1.8949 -7.7155 48 1 3.2188 0.6986 -6.1709 49 1 2.4618 0.4016 -4.3634 50 1 3.7017 -0.0545 -3.1808 51 1 0.7411 -0.0577 -2.7458 52 1 1.8893 1.1673 -2.1757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276254965.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:37 Heat of formation + Delta-G solvation = 46.556848 kcal Electronic energy + Delta-G solvation = -28080.916617 eV Core-core repulsion = 24659.567510 eV Total energy + Delta-G solvation = -3421.349107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.04940 -38.82997 -36.95160 -33.15194 -33.12423 -31.88914 -30.96622 -30.67235 -28.19603 -27.57961 -27.09448 -25.01585 -23.13500 -23.08024 -22.59932 -21.30858 -20.64159 -19.47997 -18.18832 -16.90278 -16.15377 -15.99227 -15.85874 -15.44297 -14.87279 -14.83100 -14.54232 -14.45737 -14.04899 -13.54974 -13.37622 -13.04804 -12.73557 -12.53096 -12.50048 -12.31636 -12.05606 -11.92526 -11.74824 -11.61462 -11.46218 -11.23908 -11.09686 -11.02598 -10.77790 -10.72765 -10.54955 -10.46458 -10.38664 -10.16776 -9.87430 -9.83137 -9.08933 -8.97256 -8.90996 -8.80316 -8.21964 -7.99000 -7.33648 -5.84857 -3.81621 1.26185 1.32533 3.39738 3.46120 3.50602 3.63763 4.25826 4.58373 4.63485 4.72721 4.77003 4.90984 5.01743 5.14106 5.26066 5.28326 5.41865 5.50981 5.52346 5.56410 5.60796 5.63741 5.73962 5.76423 5.82454 5.91596 5.94426 5.95700 5.99125 6.05092 6.12474 6.16394 6.19887 6.25750 6.35665 6.36949 6.41665 6.45161 6.50985 6.55628 6.59306 6.73045 6.75585 6.85823 6.91924 7.08101 7.35087 7.49090 7.64679 7.78072 8.07929 8.12809 8.21706 8.63587 9.23356 9.79066 11.27252 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003649 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.356394 B = 7671.948260 C = 8198.119266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.031 3.969 5 C -0.482 4.482 6 H 0.058 0.942 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.886 3.114 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.503 5.503 14 C 0.073 3.927 15 C -0.092 4.092 16 C 0.091 3.909 17 H 0.058 0.942 18 C -0.163 4.163 19 N -0.519 5.519 20 C 0.085 3.915 21 C -0.069 4.069 22 C -0.100 4.100 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.116 4.116 27 C 0.056 3.944 28 C 0.059 3.941 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.013 0.987 33 H 0.023 0.977 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.033 0.967 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 1.205 -21.176 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.007 4.007 5 C -0.521 4.521 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.226 5.226 14 C -0.056 4.056 15 C -0.131 4.131 16 C -0.018 4.018 17 H 0.076 0.924 18 C -0.220 4.220 19 N -0.244 5.244 20 C -0.042 4.042 21 C -0.070 4.070 22 C -0.118 4.118 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.135 4.135 27 C -0.072 4.072 28 C -0.069 4.069 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.089 0.911 50 H 0.061 0.939 51 H 0.051 0.949 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.971 0.884 -20.934 21.534 hybrid contribution 0.974 0.367 0.057 1.043 sum -3.997 1.252 -20.877 21.293 Atomic orbital electron populations 1.22555 0.99746 1.01433 1.00297 1.21981 0.89962 0.98066 0.92068 0.91620 1.19203 0.96304 0.95489 0.89655 1.21111 0.91568 1.28640 1.10794 0.92425 1.24975 0.97755 0.95978 0.96114 1.69959 1.35017 1.33115 1.16453 0.86685 0.86787 0.77059 0.77961 1.21110 1.21619 1.20038 1.61584 1.58344 1.02005 1.00698 1.21621 0.94460 0.90011 0.99524 1.21967 0.97891 0.96810 0.96403 1.21343 0.95002 0.93067 0.92339 0.92372 1.22328 1.00476 0.98954 1.00284 1.61658 1.56631 1.05950 1.00134 1.21309 0.94507 1.00355 0.88021 1.19886 0.96233 0.94141 0.96697 1.21015 0.94098 1.00132 0.96573 1.21136 0.99464 0.94948 0.98519 1.21101 0.97698 0.95146 1.00495 1.21095 0.95344 0.99751 0.97818 1.21095 0.99917 0.94359 0.98080 1.21261 0.99499 0.88909 0.97504 1.21028 0.97464 0.97270 0.91169 0.92925 0.92915 0.94215 0.96852 0.95873 0.93418 0.91520 0.95497 0.93082 0.91240 0.92887 0.92189 0.92250 0.94304 0.89080 0.86118 0.86350 0.86484 0.86354 0.86308 0.91107 0.93901 0.94915 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.58 37.16 0.32 -2.87 16 2 C 0.09 1.78 2.22 -67.71 -0.15 1.63 16 3 H 0.07 1.37 7.78 -51.93 -0.40 0.96 16 4 C 0.03 0.77 4.37 -27.88 -0.12 0.65 16 5 C -0.48 -13.43 8.80 -34.44 -0.30 -13.73 16 6 H 0.06 1.61 7.75 -52.49 -0.41 1.21 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 N -0.50 -9.58 3.89 -231.07 -0.90 -10.47 16 14 C 0.07 1.34 3.88 -4.59 -0.02 1.32 16 15 C -0.09 -1.56 5.78 -25.36 -0.15 -1.71 16 16 C 0.09 1.39 2.49 -68.48 -0.17 1.22 16 17 H 0.06 1.05 7.17 -51.92 -0.37 0.67 16 18 C -0.16 -2.01 7.64 37.16 0.28 -1.73 16 19 N -0.52 -7.22 4.25 -232.41 -0.99 -8.21 16 20 C 0.09 0.99 3.83 -4.98 -0.02 0.97 16 21 C -0.07 -0.78 4.98 -104.62 -0.52 -1.30 16 22 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16 26 C -0.12 -1.24 7.88 -39.58 -0.31 -1.55 16 27 C 0.06 0.81 5.01 -6.45 -0.03 0.78 16 28 C 0.06 0.95 4.47 -6.45 -0.03 0.92 16 29 H 0.05 0.94 6.69 -51.93 -0.35 0.59 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.63 7.05 -51.93 -0.37 0.27 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.63 6.38 -51.93 -0.33 0.30 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.36 4.91 -51.93 -0.25 1.10 16 36 H 0.03 0.48 7.17 -51.93 -0.37 0.11 16 37 H 0.05 0.78 7.98 -51.93 -0.41 0.37 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.59 6.46 -51.93 -0.34 0.25 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.67 7.38 -51.93 -0.38 0.29 16 42 H 0.04 0.45 7.78 -51.93 -0.40 0.04 16 43 H 0.09 0.98 5.52 -51.93 -0.29 0.69 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.12 1.17 7.50 -52.49 -0.39 0.78 16 49 H 0.07 0.92 4.75 -51.93 -0.25 0.68 16 50 H 0.04 0.68 7.37 -51.93 -0.38 0.30 16 51 H 0.03 0.54 6.83 -51.93 -0.35 0.18 16 52 H 0.06 1.01 7.63 -51.93 -0.40 0.61 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -29.87 384.71 -12.24 -42.11 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.97 Total: 0.46 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.89 Total: -20.25 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.15 Total: -45.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.87 -12.24 -42.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276254965.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.668 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds