Wall clock time and date at job start Tue Mar 31 2020 11:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46759 * 2 1 4 4 C 1.53000 * 109.46622 * 240.00682 * 2 1 3 5 5 C 1.50703 * 109.46743 * 177.77204 * 4 2 1 6 6 H 1.07996 * 120.00094 * 354.97063 * 5 4 2 7 7 C 1.37882 * 120.00014 * 174.96860 * 5 4 2 8 8 N 1.31515 * 119.99581 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99988 * 179.72609 * 7 5 4 10 10 H 1.48495 * 109.47310 * 60.00046 * 9 7 5 11 11 H 1.48501 * 109.46884 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46785 * 299.99903 * 9 7 5 13 13 N 1.46893 * 109.47556 * 120.00523 * 2 1 3 14 14 C 1.44178 * 110.99835 * 292.65622 * 13 2 1 15 15 C 1.54316 * 112.61704 * 217.51200 * 14 13 2 16 16 C 1.54317 * 111.73197 * 318.91638 * 15 14 13 17 17 H 1.08994 * 108.85451 * 79.71949 * 16 15 14 18 18 C 1.52997 * 108.77092 * 198.16687 * 16 15 14 19 19 N 1.44180 * 112.60086 * 318.91299 * 16 15 14 20 20 C 1.46904 * 110.99670 * 217.51995 * 19 16 15 21 21 C 1.50701 * 109.46755 * 171.42434 * 20 19 16 22 22 C 1.38235 * 119.99735 * 269.71896 * 21 20 19 23 23 C 1.38233 * 119.99725 * 179.79147 * 22 21 20 24 24 C 1.38236 * 120.00469 * 0.44510 * 23 22 21 25 25 C 1.38239 * 119.99432 * 359.81019 * 24 23 22 26 26 C 1.38233 * 120.00338 * 359.97438 * 25 24 23 27 27 C 1.48083 * 109.89430 * 94.35224 * 19 16 15 28 28 C 1.46091 * 112.15997 * 279.63911 * 27 19 16 29 29 H 1.09000 * 109.47768 * 54.25019 * 1 2 3 30 30 H 1.09004 * 109.47172 * 174.25362 * 1 2 3 31 31 H 1.09007 * 109.47023 * 294.24861 * 1 2 3 32 32 H 1.08997 * 109.47641 * 57.77688 * 4 2 1 33 33 H 1.08998 * 109.47336 * 297.76832 * 4 2 1 34 34 H 0.96998 * 119.99469 * 179.97438 * 8 7 5 35 35 H 1.09003 * 108.85456 * 338.31689 * 14 13 2 36 36 H 1.08997 * 108.85823 * 96.70089 * 14 13 2 37 37 H 1.08998 * 109.02948 * 198.33161 * 15 14 13 38 38 H 1.09003 * 109.02755 * 79.49483 * 15 14 13 39 39 H 1.09009 * 109.47022 * 183.02887 * 18 16 15 40 40 H 1.08996 * 109.47580 * 303.02512 * 18 16 15 41 41 H 1.09001 * 109.47156 * 63.03145 * 18 16 15 42 42 H 1.09003 * 109.46960 * 291.42007 * 20 19 16 43 43 H 1.08996 * 109.47123 * 51.41973 * 20 19 16 44 44 H 1.07995 * 120.00035 * 0.02562 * 22 21 20 45 45 H 1.07999 * 120.00093 * 180.27998 * 23 22 21 46 46 H 1.07997 * 120.00339 * 179.83582 * 24 23 22 47 47 H 1.08001 * 119.99836 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.00116 * 180.02562 * 26 25 24 49 49 H 1.09002 * 108.94263 * 158.95143 * 27 19 16 50 50 H 1.08997 * 108.86934 * 40.28125 * 27 19 16 51 51 H 1.09002 * 108.94586 * 299.99956 * 28 27 19 52 52 H 1.08992 * 108.94937 * 181.38019 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5459 -0.6735 -1.2773 6 1 4.0823 -0.1098 -0.5284 7 6 4.2390 -1.3496 -2.2590 8 7 3.5856 -2.0356 -3.1713 9 14 6.1054 -1.2842 -2.2982 10 1 6.6468 -1.8377 -1.0310 11 1 6.6048 -2.0874 -3.4431 12 1 6.5482 0.1249 -2.4521 13 7 2.0198 -0.6926 1.1993 14 6 1.7032 0.0531 2.3920 15 6 2.8263 -0.0121 3.4482 16 6 3.4299 -1.4284 3.5538 17 1 4.1353 -1.5726 2.7356 18 6 4.1822 -1.5453 4.8809 19 7 2.4281 -2.4635 3.4933 20 6 2.7585 -3.5696 4.4019 21 6 1.5966 -4.5268 4.4713 22 6 0.6120 -4.3506 5.4254 23 6 -0.4560 -5.2261 5.4862 24 6 -0.5347 -6.2832 4.5990 25 6 0.4528 -6.4625 3.6483 26 6 1.5185 -5.5845 3.5845 27 6 2.2851 -2.9456 2.1005 28 6 1.4528 -2.0574 1.2927 29 1 -0.3634 0.6004 -0.8340 30 1 -0.3634 -1.0225 -0.1029 31 1 -0.3633 0.4221 0.9371 32 1 1.6444 -0.2308 -2.1388 33 1 1.7096 -1.7597 -1.2297 34 1 4.0732 -2.5109 -3.8621 35 1 1.5343 1.0954 2.1213 36 1 0.7877 -0.3487 2.8261 37 1 2.4192 0.2740 4.4180 38 1 3.6135 0.6901 3.1737 39 1 4.6587 -2.5237 4.9435 40 1 4.9428 -0.7666 4.9373 41 1 3.4812 -1.4290 5.7075 42 1 3.6394 -4.0937 4.0310 43 1 2.9633 -3.1739 5.3966 44 1 0.6751 -3.5267 6.1207 45 1 -1.2277 -5.0858 6.2287 46 1 -1.3677 -6.9688 4.6483 47 1 0.3916 -7.2887 2.9554 48 1 2.2897 -5.7243 2.8415 49 1 1.8341 -3.9379 2.1140 50 1 3.2741 -3.0129 1.6474 51 1 0.4604 -1.9985 1.7398 52 1 1.3626 -2.4726 0.2890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276254970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:40 Heat of formation + Delta-G solvation = 46.235569 kcal Electronic energy + Delta-G solvation = -28205.374230 eV Core-core repulsion = 24784.011192 eV Total energy + Delta-G solvation = -3421.363039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00001 -38.78161 -36.92282 -33.38343 -32.84057 -31.79589 -30.87449 -30.86650 -28.10653 -27.64106 -27.09433 -25.00577 -23.29108 -22.87609 -22.36909 -21.44625 -20.68106 -19.21921 -18.44682 -16.82602 -16.13733 -15.91134 -15.81083 -15.34727 -14.99536 -14.80829 -14.43949 -14.43677 -13.92155 -13.46826 -13.33846 -13.15179 -12.71224 -12.51821 -12.47561 -12.28127 -12.21988 -11.97227 -11.70077 -11.62031 -11.47211 -11.11760 -11.05935 -11.00302 -10.76992 -10.72269 -10.58534 -10.47563 -10.38550 -10.14922 -10.04836 -9.75695 -9.08731 -8.94881 -8.88102 -8.72553 -8.22708 -7.94622 -7.34078 -5.86407 -3.83260 1.34540 1.41205 3.40562 3.44588 3.47956 3.71649 4.32320 4.57086 4.66717 4.79564 4.85503 4.99809 5.09479 5.11560 5.19637 5.30705 5.48586 5.49918 5.53322 5.57915 5.63518 5.66294 5.74443 5.82582 5.87664 5.91106 5.98358 6.00501 6.03273 6.07046 6.07388 6.15301 6.17597 6.21600 6.38653 6.42199 6.46981 6.50177 6.50848 6.55338 6.63372 6.68434 6.70519 6.78671 7.00303 7.05917 7.39266 7.51909 7.62542 7.78663 8.01916 8.14864 8.21710 8.62315 9.22053 9.77635 11.25634 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.004099 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.346592 B = 6829.124269 C = 7029.535169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.505 5.505 14 C 0.066 3.934 15 C -0.092 4.092 16 C 0.090 3.910 17 H 0.060 0.940 18 C -0.163 4.163 19 N -0.521 5.521 20 C 0.085 3.915 21 C -0.069 4.069 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.114 4.114 27 C 0.055 3.945 28 C 0.065 3.935 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.014 0.986 33 H 0.023 0.977 34 H 0.257 0.743 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.071 0.929 50 H 0.050 0.950 51 H 0.027 0.973 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -4.485 18.096 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.085 0.915 4 C -0.008 4.008 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.228 5.228 14 C -0.063 4.063 15 C -0.131 4.131 16 C -0.019 4.019 17 H 0.078 0.922 18 C -0.220 4.220 19 N -0.246 5.246 20 C -0.042 4.042 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.072 4.072 28 C -0.062 4.062 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.107 0.893 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.089 0.911 50 H 0.068 0.932 51 H 0.045 0.955 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.690 -4.403 18.046 19.427 hybrid contribution 0.874 -0.298 -0.377 0.998 sum -4.816 -4.701 17.669 18.907 Atomic orbital electron populations 1.22546 0.99746 1.01385 1.00294 1.21979 0.89960 0.97962 0.92111 0.91501 1.19220 0.96335 0.95366 0.89835 1.21100 0.91445 1.29217 1.10548 0.92325 1.24975 0.97755 0.96026 0.96020 1.69953 1.35075 1.33566 1.15984 0.86741 0.86738 0.77815 0.77118 1.20536 1.21717 1.20538 1.61537 1.58715 1.01474 1.01032 1.21694 0.96189 0.97049 0.91404 1.21982 0.98325 0.95164 0.97627 1.21320 0.91870 0.92188 0.96565 0.92211 1.22327 1.00128 1.01552 0.97993 1.61688 1.46725 1.08977 1.07184 1.21300 0.93412 0.90908 0.98541 1.19860 0.96619 0.95185 0.95328 1.20975 0.93827 0.98603 0.98543 1.21109 0.98239 0.95469 0.99390 1.21100 0.98888 0.98323 0.96107 1.21118 0.94646 0.99433 0.98666 1.21140 0.98675 0.94916 0.98504 1.21289 1.00893 0.98036 0.86966 1.20987 0.94990 0.90443 0.99822 0.92933 0.93024 0.94201 0.96808 0.95935 0.93356 0.93210 0.94851 0.92839 0.92235 0.92671 0.92469 0.92261 0.94225 0.89270 0.86262 0.86443 0.86498 0.86264 0.86128 0.91096 0.93207 0.95473 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.51 37.16 0.32 -2.87 16 2 C 0.09 1.80 2.12 -67.72 -0.14 1.65 16 3 H 0.07 1.40 7.84 -51.93 -0.41 0.99 16 4 C 0.03 0.74 4.35 -27.88 -0.12 0.62 16 5 C -0.48 -13.44 8.76 -34.44 -0.30 -13.74 16 6 H 0.06 1.63 7.75 -52.49 -0.41 1.23 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.50 -9.60 3.87 -231.08 -0.90 -10.50 16 14 C 0.07 1.08 4.18 -4.59 -0.02 1.06 16 15 C -0.09 -1.34 5.78 -25.35 -0.15 -1.48 16 16 C 0.09 1.30 2.49 -68.48 -0.17 1.13 16 17 H 0.06 1.05 7.16 -51.93 -0.37 0.68 16 18 C -0.16 -1.86 7.64 37.16 0.28 -1.58 16 19 N -0.52 -7.49 4.25 -232.40 -0.99 -8.47 16 20 C 0.09 1.05 3.83 -4.97 -0.02 1.03 16 21 C -0.07 -0.85 4.98 -104.62 -0.52 -1.37 16 22 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 24 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 26 C -0.11 -1.38 7.88 -39.58 -0.31 -1.70 16 27 C 0.06 0.92 5.02 -6.45 -0.03 0.89 16 28 C 0.07 1.20 3.77 -6.45 -0.02 1.17 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.92 7.11 -51.93 -0.37 0.55 16 31 H 0.04 0.63 7.21 -51.93 -0.37 0.26 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.60 6.09 -51.93 -0.32 0.29 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.05 0.80 7.36 -51.93 -0.38 0.42 16 36 H 0.03 0.55 7.13 -51.93 -0.37 0.18 16 37 H 0.05 0.69 7.98 -51.93 -0.41 0.28 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.60 6.46 -51.92 -0.34 0.26 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 42 H 0.04 0.49 7.78 -51.93 -0.40 0.09 16 43 H 0.09 0.97 5.52 -51.93 -0.29 0.69 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.12 1.43 7.50 -52.49 -0.39 1.04 16 49 H 0.07 1.11 4.75 -51.93 -0.25 0.86 16 50 H 0.05 0.95 7.36 -51.93 -0.38 0.57 16 51 H 0.03 0.49 6.98 -51.93 -0.36 0.13 16 52 H 0.08 1.75 5.60 -51.93 -0.29 1.46 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -29.59 384.97 -12.27 -41.85 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -9.02 Total: 1.14 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.89 Total: -20.48 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -1.15 Total: -45.34 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.59 -12.27 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276254970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.091 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds