Wall clock time and date at job start Tue Mar 31 2020 11:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46759 * 2 1 4 4 C 1.53000 * 109.46622 * 240.00682 * 2 1 3 5 5 C 1.50703 * 109.46743 * 177.77204 * 4 2 1 6 6 H 1.07996 * 120.00094 * 354.97063 * 5 4 2 7 7 C 1.37882 * 120.00014 * 174.96860 * 5 4 2 8 8 N 1.31515 * 119.99581 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99988 * 179.72609 * 7 5 4 10 10 H 1.48495 * 109.47310 * 60.00046 * 9 7 5 11 11 H 1.48501 * 109.46884 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46785 * 299.99903 * 9 7 5 13 13 N 1.46893 * 109.47556 * 120.00523 * 2 1 3 14 14 C 1.44178 * 110.99835 * 292.65622 * 13 2 1 15 15 C 1.54316 * 112.61704 * 217.51200 * 14 13 2 16 16 C 1.54317 * 111.73197 * 318.91638 * 15 14 13 17 17 H 1.08994 * 108.85451 * 79.71949 * 16 15 14 18 18 C 1.52997 * 108.77092 * 198.16687 * 16 15 14 19 19 N 1.44180 * 112.60086 * 318.91299 * 16 15 14 20 20 C 1.46904 * 110.99670 * 217.51995 * 19 16 15 21 21 C 1.50701 * 109.46755 * 171.42434 * 20 19 16 22 22 C 1.38235 * 119.99735 * 269.71896 * 21 20 19 23 23 C 1.38233 * 119.99725 * 179.79147 * 22 21 20 24 24 C 1.38236 * 120.00469 * 0.44510 * 23 22 21 25 25 C 1.38239 * 119.99432 * 359.81019 * 24 23 22 26 26 C 1.38233 * 120.00338 * 359.97438 * 25 24 23 27 27 C 1.48083 * 109.89430 * 94.35224 * 19 16 15 28 28 C 1.46091 * 112.15997 * 279.63911 * 27 19 16 29 29 H 1.09000 * 109.47768 * 54.25019 * 1 2 3 30 30 H 1.09004 * 109.47172 * 174.25362 * 1 2 3 31 31 H 1.09007 * 109.47023 * 294.24861 * 1 2 3 32 32 H 1.08997 * 109.47641 * 57.77688 * 4 2 1 33 33 H 1.08998 * 109.47336 * 297.76832 * 4 2 1 34 34 H 0.96998 * 119.99469 * 179.97438 * 8 7 5 35 35 H 1.09003 * 108.85456 * 338.31689 * 14 13 2 36 36 H 1.08997 * 108.85823 * 96.70089 * 14 13 2 37 37 H 1.08998 * 109.02948 * 198.33161 * 15 14 13 38 38 H 1.09003 * 109.02755 * 79.49483 * 15 14 13 39 39 H 1.09009 * 109.47022 * 183.02887 * 18 16 15 40 40 H 1.08996 * 109.47580 * 303.02512 * 18 16 15 41 41 H 1.09001 * 109.47156 * 63.03145 * 18 16 15 42 42 H 1.09003 * 109.46960 * 291.42007 * 20 19 16 43 43 H 1.08996 * 109.47123 * 51.41973 * 20 19 16 44 44 H 1.07995 * 120.00035 * 0.02562 * 22 21 20 45 45 H 1.07999 * 120.00093 * 180.27998 * 23 22 21 46 46 H 1.07997 * 120.00339 * 179.83582 * 24 23 22 47 47 H 1.08001 * 119.99836 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.00116 * 180.02562 * 26 25 24 49 49 H 1.09002 * 108.94263 * 158.95143 * 27 19 16 50 50 H 1.08997 * 108.86934 * 40.28125 * 27 19 16 51 51 H 1.09002 * 108.94586 * 299.99956 * 28 27 19 52 52 H 1.08992 * 108.94937 * 181.38019 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5459 -0.6735 -1.2773 6 1 4.0823 -0.1098 -0.5284 7 6 4.2390 -1.3496 -2.2590 8 7 3.5856 -2.0356 -3.1713 9 14 6.1054 -1.2842 -2.2982 10 1 6.6468 -1.8377 -1.0310 11 1 6.6048 -2.0874 -3.4431 12 1 6.5482 0.1249 -2.4521 13 7 2.0198 -0.6926 1.1993 14 6 1.7032 0.0531 2.3920 15 6 2.8263 -0.0121 3.4482 16 6 3.4299 -1.4284 3.5538 17 1 4.1353 -1.5726 2.7356 18 6 4.1822 -1.5453 4.8809 19 7 2.4281 -2.4635 3.4933 20 6 2.7585 -3.5696 4.4019 21 6 1.5966 -4.5268 4.4713 22 6 0.6120 -4.3506 5.4254 23 6 -0.4560 -5.2261 5.4862 24 6 -0.5347 -6.2832 4.5990 25 6 0.4528 -6.4625 3.6483 26 6 1.5185 -5.5845 3.5845 27 6 2.2851 -2.9456 2.1005 28 6 1.4528 -2.0574 1.2927 29 1 -0.3634 0.6004 -0.8340 30 1 -0.3634 -1.0225 -0.1029 31 1 -0.3633 0.4221 0.9371 32 1 1.6444 -0.2308 -2.1388 33 1 1.7096 -1.7597 -1.2297 34 1 4.0732 -2.5109 -3.8621 35 1 1.5343 1.0954 2.1213 36 1 0.7877 -0.3487 2.8261 37 1 2.4192 0.2740 4.4180 38 1 3.6135 0.6901 3.1737 39 1 4.6587 -2.5237 4.9435 40 1 4.9428 -0.7666 4.9373 41 1 3.4812 -1.4290 5.7075 42 1 3.6394 -4.0937 4.0310 43 1 2.9633 -3.1739 5.3966 44 1 0.6751 -3.5267 6.1207 45 1 -1.2277 -5.0858 6.2287 46 1 -1.3677 -6.9688 4.6483 47 1 0.3916 -7.2887 2.9554 48 1 2.2897 -5.7243 2.8415 49 1 1.8341 -3.9379 2.1140 50 1 3.2741 -3.0129 1.6474 51 1 0.4604 -1.9985 1.7398 52 1 1.3626 -2.4726 0.2890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276254970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:39 Heat of formation + Delta-G solvation = 30.281895 kcal Electronic energy + Delta-G solvation = -28206.066034 eV Core-core repulsion = 24784.011192 eV Total energy + Delta-G solvation = -3422.054842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15638 -39.86743 -38.24944 -35.08886 -34.30229 -33.25388 -32.16554 -31.71091 -29.44575 -29.13161 -28.58765 -26.13879 -25.16295 -24.07085 -23.38920 -22.70501 -21.89051 -20.46597 -19.92455 -18.33112 -17.72021 -17.23840 -16.96374 -16.67419 -16.35726 -16.04116 -15.86513 -15.57793 -15.33986 -14.74204 -14.49241 -14.28548 -14.13754 -13.88088 -13.64605 -13.50306 -13.36367 -13.34007 -13.23415 -13.00955 -12.90608 -12.65808 -12.55602 -12.37262 -12.33073 -12.04406 -11.94205 -11.84394 -11.68381 -11.56672 -11.41372 -11.19378 -11.08321 -10.92498 -10.45446 -9.73314 -9.61502 -9.15226 -8.83461 -8.08780 -6.12249 0.48631 0.56699 1.39433 1.41461 1.48926 2.46619 2.78497 3.15469 3.22250 3.29302 3.87827 3.97876 4.01421 4.05815 4.21422 4.23941 4.30909 4.32650 4.33860 4.39435 4.45865 4.49374 4.57788 4.60353 4.67477 4.68221 4.72150 4.79464 4.82743 4.93284 4.96865 4.97967 5.06988 5.09318 5.14656 5.16945 5.21411 5.23817 5.24982 5.32150 5.34927 5.39021 5.53310 5.62847 5.67943 5.74149 5.77929 5.91491 6.17463 6.17874 6.36030 6.36787 6.52197 6.71865 7.00535 7.52605 9.03122 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.004099 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.346592 B = 6829.124269 C = 7029.535169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 H 0.064 0.936 4 C 0.037 3.963 5 C -0.491 4.491 6 H 0.054 0.946 7 C -0.001 4.001 8 N -0.939 5.939 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.520 5.520 14 C 0.067 3.933 15 C -0.089 4.089 16 C 0.088 3.912 17 H 0.020 0.980 18 C -0.154 4.154 19 N -0.513 5.513 20 C 0.088 3.912 21 C -0.083 4.083 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.133 4.133 27 C 0.065 3.935 28 C 0.077 3.923 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.063 0.937 32 H -0.011 1.011 33 H -0.001 1.001 34 H 0.257 0.743 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.111 0.889 44 H 0.134 0.866 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.131 0.869 48 H 0.111 0.889 49 H 0.079 0.921 50 H 0.016 0.984 51 H 0.035 0.965 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 -4.041 21.000 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 H 0.082 0.918 4 C 0.000 4.000 5 C -0.530 4.530 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.582 5.582 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.243 5.243 14 C -0.062 4.062 15 C -0.128 4.128 16 C -0.021 4.021 17 H 0.038 0.962 18 C -0.212 4.212 19 N -0.238 5.238 20 C -0.039 4.039 21 C -0.084 4.084 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.151 4.151 27 C -0.063 4.063 28 C -0.051 4.051 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.007 0.993 33 H 0.017 0.983 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.129 0.871 44 H 0.152 0.848 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.148 0.852 48 H 0.129 0.871 49 H 0.097 0.903 50 H 0.034 0.966 51 H 0.053 0.947 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.121 -3.949 20.969 22.199 hybrid contribution 0.960 -0.474 -1.272 1.662 sum -5.161 -4.422 19.698 20.837 Atomic orbital electron populations 1.22392 0.97301 1.01338 1.01763 1.21709 0.91881 0.96912 0.90797 0.91794 1.19069 0.95237 0.94319 0.91410 1.21377 0.92831 1.28675 1.10101 0.92740 1.25763 1.02414 0.95788 0.95756 1.70083 1.36835 1.34538 1.16722 0.85724 0.81227 0.78195 0.77171 1.20082 1.21333 1.19512 1.61486 1.59298 1.01898 1.01653 1.21749 0.97143 0.96816 0.90521 1.21982 0.97640 0.95004 0.98142 1.21304 0.91389 0.92328 0.97118 0.96176 1.22250 1.00323 1.02177 0.96412 1.61689 1.46731 1.09669 1.05672 1.21369 0.93420 0.90325 0.98776 1.19900 0.97116 0.95307 0.96073 1.21199 0.93707 0.99251 0.98424 1.21450 0.98430 0.94903 0.99625 1.21433 0.99120 0.98687 0.95481 1.21352 0.94614 0.99652 0.99318 1.21216 0.99203 0.95837 0.98879 1.21087 0.98653 0.98207 0.88314 1.20832 0.95685 0.90324 0.98250 0.92414 0.93656 0.91850 0.99316 0.98271 0.93392 0.92668 0.94461 0.90190 0.92625 0.92227 0.91740 0.90366 0.94926 0.87136 0.84827 0.84000 0.84245 0.85153 0.87051 0.90305 0.96615 0.94678 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 8.51 71.98 0.61 -5.26 16 2 C 0.10 3.96 2.12 44.92 0.10 4.05 16 3 H 0.06 2.68 7.84 -2.39 -0.02 2.67 16 4 C 0.04 1.94 4.35 29.85 0.13 2.07 16 5 C -0.49 -28.13 8.76 25.60 0.22 -27.91 16 6 H 0.05 3.11 7.75 -2.91 -0.02 3.08 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 8 N -0.94 -58.08 13.29 21.45 0.28 -57.80 16 9 Si 0.95 46.08 29.54 68.60 2.03 48.11 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.52 -20.02 3.87 -884.99 -3.43 -23.45 16 14 C 0.07 2.08 4.18 87.26 0.36 2.45 16 15 C -0.09 -2.41 5.78 31.49 0.18 -2.23 16 16 C 0.09 2.47 2.49 45.87 0.11 2.58 16 17 H 0.02 0.73 7.16 -2.39 -0.02 0.71 16 18 C -0.15 -3.16 7.64 71.98 0.55 -2.61 16 19 N -0.51 -14.36 4.25 -889.18 -3.78 -18.14 16 20 C 0.09 2.04 3.83 85.56 0.33 2.37 16 21 C -0.08 -1.94 4.98 -19.86 -0.10 -2.04 16 22 C -0.11 -2.17 9.70 22.27 0.22 -1.96 16 23 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 24 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 25 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 26 C -0.13 -3.21 7.88 22.27 0.18 -3.04 16 27 C 0.07 2.24 5.02 83.95 0.42 2.66 16 28 C 0.08 2.90 3.77 83.95 0.32 3.21 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.62 7.11 -2.38 -0.02 1.60 16 31 H 0.06 1.90 7.21 -2.38 -0.02 1.89 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.00 -0.05 6.09 -2.39 -0.01 -0.07 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.05 1.66 7.36 -2.39 -0.02 1.65 16 36 H 0.04 1.15 7.13 -2.39 -0.02 1.13 16 37 H 0.08 1.78 7.98 -2.39 -0.02 1.76 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.17 6.46 -2.38 -0.02 1.16 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.33 7.38 -2.39 -0.02 1.32 16 42 H 0.03 0.81 7.78 -2.39 -0.02 0.79 16 43 H 0.11 2.10 5.52 -2.39 -0.01 2.09 16 44 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 46 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 47 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 48 H 0.11 2.78 7.50 -2.91 -0.02 2.76 16 49 H 0.08 2.57 4.75 -2.39 -0.01 2.55 16 50 H 0.02 0.64 7.36 -2.39 -0.02 0.62 16 51 H 0.04 1.26 6.98 -2.39 -0.02 1.24 16 52 H 0.05 2.24 5.60 -2.39 -0.01 2.23 16 Total: -1.00 -65.53 384.97 0.74 -64.79 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.87 Total: 18.57 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 4.76 Total: -32.07 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -6.92 Total: -99.39 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -65.53 0.74 -64.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276254970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.068 kcal (2) G-P(sol) polarization free energy of solvation -65.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds