Wall clock time and date at job start Tue Mar 31 2020 11:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53006 * 109.47006 * 240.00461 * 2 1 3 5 5 C 1.50692 * 109.47069 * 63.33160 * 4 2 1 6 6 H 1.08000 * 120.00333 * 356.50090 * 5 4 2 7 7 C 1.37881 * 120.00270 * 176.50410 * 5 4 2 8 8 N 1.31523 * 119.99641 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00263 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46774 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47003 * 299.99623 * 9 7 5 12 12 H 1.48494 * 109.47041 * 60.00009 * 9 7 5 13 13 N 1.46904 * 109.47312 * 120.00598 * 2 1 3 14 14 C 1.48071 * 110.99417 * 316.28496 * 13 2 1 15 15 C 1.53703 * 112.46048 * 192.19391 * 14 13 2 16 16 C 1.50794 * 112.10830 * 318.55665 * 15 14 13 17 17 H 1.08997 * 109.62882 * 332.84820 * 16 15 14 18 18 C 1.52992 * 109.79595 * 212.34628 * 16 15 14 19 19 N 1.47918 * 108.49947 * 92.54616 * 16 15 14 20 20 C 1.46901 * 110.99538 * 153.79276 * 19 16 15 21 21 C 1.50704 * 109.46889 * 186.86017 * 20 19 16 22 22 C 1.38232 * 119.99919 * 264.35029 * 21 20 19 23 23 C 1.38237 * 119.99988 * 179.78818 * 22 21 20 24 24 C 1.38235 * 119.99574 * 0.44401 * 23 22 21 25 25 C 1.38232 * 120.00510 * 359.80572 * 24 23 22 26 26 C 1.38238 * 119.99771 * 84.62660 * 21 20 19 27 27 C 1.40007 * 114.06327 * 280.07307 * 19 16 15 28 28 C 1.44567 * 110.99700 * 188.59428 * 13 2 1 29 29 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46697 * 299.99478 * 1 2 3 31 31 H 1.08996 * 109.47244 * 60.00034 * 1 2 3 32 32 H 1.09003 * 109.47152 * 303.33141 * 4 2 1 33 33 H 1.08995 * 109.47036 * 183.33366 * 4 2 1 34 34 H 0.96999 * 119.99255 * 359.97438 * 8 7 5 35 35 H 1.08993 * 108.88463 * 312.97142 * 14 13 2 36 36 H 1.09006 * 108.88209 * 71.43335 * 14 13 2 37 37 H 1.09002 * 108.95220 * 197.87850 * 15 14 13 38 38 H 1.09000 * 108.95244 * 79.24100 * 15 14 13 39 39 H 1.09000 * 109.47396 * 294.35350 * 18 16 15 40 40 H 1.09003 * 109.47219 * 54.35732 * 18 16 15 41 41 H 1.09002 * 109.47348 * 174.34973 * 18 16 15 42 42 H 1.09007 * 109.47057 * 306.85494 * 20 19 16 43 43 H 1.09001 * 109.47486 * 66.85790 * 20 19 16 44 44 H 1.08006 * 120.00095 * 359.97438 * 22 21 20 45 45 H 1.08000 * 119.99664 * 180.27384 * 23 22 21 46 46 H 1.08006 * 119.99563 * 179.83292 * 24 23 22 47 47 H 1.07996 * 120.00184 * 179.97438 * 25 24 23 48 48 H 1.07994 * 120.00218 * 359.97245 * 26 21 20 49 49 H 1.08997 * 108.96707 * 301.13984 * 27 19 16 50 50 H 1.09002 * 108.95789 * 182.47716 * 27 19 16 51 51 H 1.09001 * 109.58016 * 340.15857 * 28 13 2 52 52 H 1.08998 * 109.57325 * 100.54144 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6063 0.0354 -2.4783 6 1 0.9777 0.9082 -2.3813 7 6 2.0118 -0.3867 -3.7267 8 7 2.7776 -1.4494 -3.8448 9 14 1.4746 0.5515 -5.2500 10 1 2.0408 -0.1005 -6.4582 11 1 -0.0079 0.5502 -5.3350 12 1 1.9646 1.9509 -5.1678 13 7 2.0198 -0.6926 1.1994 14 6 1.2546 -0.2820 2.3987 15 6 1.9177 -0.7457 3.7055 16 6 2.4545 -2.1511 3.6020 17 1 1.8804 -2.7087 2.8620 18 6 2.3535 -2.8458 4.9613 19 7 3.8714 -2.0825 3.1830 20 6 4.6138 -3.2641 3.6421 21 6 6.0803 -3.0822 3.3462 22 6 6.6235 -3.6140 2.1917 23 6 7.9678 -3.4434 1.9181 24 6 8.7706 -2.7489 2.8035 25 6 8.2284 -2.2215 3.9606 26 6 6.8833 -2.3884 4.2321 27 6 4.0514 -1.8794 1.8094 28 6 3.4506 -0.5397 1.3379 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6287 -1.7302 -1.2798 33 1 3.1283 -0.7732 -1.2200 34 1 3.0574 -1.9359 -3.0537 35 1 1.1735 0.8048 2.4104 36 1 0.2529 -0.7080 2.3410 37 1 1.1824 -0.7059 4.5092 38 1 2.7385 -0.0698 3.9452 39 1 3.0140 -2.3501 5.6727 40 1 1.3260 -2.7922 5.3213 41 1 2.6483 -3.8901 4.8585 42 1 4.4724 -3.3874 4.7159 43 1 4.2454 -4.1490 3.1231 44 1 5.9971 -4.1603 1.5019 45 1 8.3912 -3.8552 1.0139 46 1 9.8214 -2.6179 2.5911 47 1 8.8557 -1.6792 4.6525 48 1 6.4596 -1.9764 5.1360 49 1 3.5725 -2.6934 1.2652 50 1 5.1185 -1.8866 1.5872 51 1 3.8833 -0.2638 0.3763 52 1 3.6655 0.2358 2.0731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276254987.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:48 Heat of formation + Delta-G solvation = 32.916539 kcal Electronic energy + Delta-G solvation = -27704.421800 eV Core-core repulsion = 24282.481205 eV Total energy + Delta-G solvation = -3421.940595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16210 -38.84959 -36.89929 -33.94126 -33.17437 -31.83771 -30.90957 -30.84908 -28.60370 -27.67806 -26.36108 -24.78641 -23.68409 -22.88476 -22.51385 -21.42819 -20.45404 -19.80752 -18.83385 -16.89647 -16.71685 -16.08639 -15.80844 -15.66302 -15.08028 -14.83656 -14.54312 -14.26289 -13.79530 -13.68094 -13.44376 -13.14273 -13.09992 -12.81131 -12.54424 -12.46582 -12.29710 -12.16003 -11.77235 -11.48565 -11.43635 -11.26369 -11.16936 -11.07055 -11.00480 -10.76411 -10.69803 -10.57827 -10.43399 -10.27223 -10.09452 -9.97379 -9.42156 -8.92409 -8.77983 -8.50168 -8.26784 -8.00331 -7.56391 -6.30774 -3.98927 1.29801 1.38539 3.45562 3.47479 3.65716 3.66029 4.17975 4.37060 4.61126 4.74272 4.82066 4.89351 4.98004 5.02122 5.08588 5.20134 5.32366 5.41979 5.45696 5.46873 5.47972 5.58340 5.60229 5.63305 5.68470 5.77353 5.87144 5.89507 5.96322 5.97974 6.02032 6.05022 6.06255 6.14212 6.15650 6.25133 6.35798 6.40701 6.45053 6.47505 6.48581 6.61036 6.65825 6.87797 6.96620 7.04335 7.26009 7.35892 7.55809 7.56908 7.85695 7.89040 8.31285 8.51765 8.94154 9.72559 11.09773 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.003786 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.195179 B = 7394.076818 C = 9209.259205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.097 3.903 3 H 0.027 0.973 4 C 0.024 3.976 5 C -0.598 4.598 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.550 5.550 14 C 0.062 3.938 15 C -0.113 4.113 16 C 0.096 3.904 17 H 0.060 0.940 18 C -0.152 4.152 19 N -0.539 5.539 20 C 0.093 3.907 21 C -0.077 4.077 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.099 4.099 27 C 0.073 3.927 28 C 0.067 3.933 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.269 0.731 35 H 0.026 0.974 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.030 0.970 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -3.077 19.475 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.009 4.009 3 H 0.045 0.955 4 C -0.013 4.013 5 C -0.637 4.637 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.275 5.275 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.011 4.011 17 H 0.078 0.922 18 C -0.210 4.210 19 N -0.264 5.264 20 C -0.034 4.034 21 C -0.077 4.077 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.118 4.118 27 C -0.057 4.057 28 C -0.062 4.062 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.048 0.952 50 H 0.090 0.910 51 H 0.097 0.903 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.834 -3.120 17.967 19.146 hybrid contribution -0.267 0.250 1.274 1.325 sum 5.567 -2.871 19.240 20.234 Atomic orbital electron populations 1.21834 0.95514 1.01392 1.00352 1.21681 0.94677 0.94910 0.89668 0.95504 1.19232 0.95439 0.95733 0.90882 1.22030 1.34752 1.14402 0.92509 0.93366 1.25774 0.94815 0.96981 1.01243 1.70770 1.33283 1.17437 1.33490 0.83583 0.75940 0.75240 0.75754 1.20826 1.21509 1.21573 1.60871 1.03465 1.60412 1.02796 1.22380 0.97595 0.97193 0.89338 1.21500 1.00125 0.96747 0.96754 1.21229 0.87559 0.96332 0.95946 0.92229 1.22095 1.01852 1.00049 0.96988 1.59397 1.11337 1.38304 1.17328 1.21142 0.89297 0.91842 1.01118 1.19828 0.95324 0.97847 0.94733 1.21157 0.95358 0.99907 0.96634 1.21143 0.93936 0.99318 0.99410 1.21129 0.99726 0.98555 0.94776 1.21123 0.95370 1.00249 0.97522 1.20966 0.93335 0.98037 0.99457 1.21044 1.00085 0.97817 0.86738 1.21851 0.88247 0.95590 1.00517 0.92925 0.94748 0.91520 0.97073 0.97336 0.92069 0.95574 0.91384 0.91547 0.91265 0.91981 0.92165 0.92670 0.89491 0.94308 0.86194 0.86121 0.86384 0.86357 0.86172 0.95170 0.91013 0.90316 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.20 37.16 0.30 -2.30 16 2 C 0.10 2.07 2.03 -67.70 -0.14 1.94 16 3 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 4 C 0.02 0.63 3.84 -27.88 -0.11 0.53 16 5 C -0.60 -16.97 8.46 -34.44 -0.29 -17.26 16 6 H 0.05 1.34 6.81 -52.49 -0.36 0.99 16 7 C 0.02 0.45 5.46 -17.81 -0.10 0.36 16 8 N -0.91 -28.21 13.65 55.43 0.76 -27.46 16 9 Si 1.07 25.53 29.90 -169.99 -5.08 20.45 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.55 -10.03 3.83 -226.31 -0.87 -10.89 16 14 C 0.06 0.95 4.20 -2.81 -0.01 0.93 16 15 C -0.11 -1.43 4.92 -27.47 -0.14 -1.56 16 16 C 0.10 1.21 2.43 -68.26 -0.17 1.05 16 17 H 0.06 0.89 7.57 -51.93 -0.39 0.50 16 18 C -0.15 -1.47 7.73 37.15 0.29 -1.18 16 19 N -0.54 -7.18 4.09 -233.19 -0.95 -8.14 16 20 C 0.09 1.08 4.21 -4.97 -0.02 1.05 16 21 C -0.08 -0.92 4.41 -104.62 -0.46 -1.38 16 22 C -0.11 -1.37 8.14 -39.58 -0.32 -1.69 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 24 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.10 -1.10 9.72 -39.58 -0.38 -1.49 16 27 C 0.07 1.16 4.77 -6.75 -0.03 1.13 16 28 C 0.07 1.19 5.13 -4.44 -0.02 1.16 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.57 6.45 -51.93 -0.34 0.23 16 31 H 0.07 1.39 6.77 -51.93 -0.35 1.04 16 32 H 0.01 0.31 8.11 -51.93 -0.42 -0.11 16 33 H 0.01 0.23 6.19 -51.93 -0.32 -0.09 16 34 H 0.27 8.33 7.21 -40.82 -0.29 8.04 16 35 H 0.03 0.40 7.84 -51.93 -0.41 -0.01 16 36 H 0.07 1.02 7.00 -51.93 -0.36 0.65 16 37 H 0.07 0.71 7.63 -51.93 -0.40 0.31 16 38 H 0.07 0.93 7.23 -51.93 -0.38 0.55 16 39 H 0.06 0.57 7.76 -51.93 -0.40 0.16 16 40 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 41 H 0.05 0.50 6.90 -51.93 -0.36 0.15 16 42 H 0.09 0.87 5.81 -51.93 -0.30 0.57 16 43 H 0.04 0.47 8.05 -51.93 -0.42 0.05 16 44 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.03 0.54 8.07 -51.93 -0.42 0.13 16 50 H 0.07 1.15 5.54 -51.93 -0.29 0.86 16 51 H 0.08 1.58 6.02 -51.93 -0.31 1.27 16 52 H 0.04 0.69 6.93 -51.93 -0.36 0.33 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -30.52 384.96 -12.18 -42.70 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -9.04 Total: 1.40 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.79 Total: -23.87 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -1.06 Total: -46.49 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.52 -12.18 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276254987.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.621 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds