Wall clock time and date at job start Tue Mar 31 2020 11:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53006 * 109.47006 * 240.00461 * 2 1 3 5 5 C 1.50692 * 109.47069 * 63.33160 * 4 2 1 6 6 H 1.08000 * 120.00333 * 356.50090 * 5 4 2 7 7 C 1.37881 * 120.00270 * 176.50410 * 5 4 2 8 8 N 1.31523 * 119.99641 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00263 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46774 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47003 * 299.99623 * 9 7 5 12 12 H 1.48494 * 109.47041 * 60.00009 * 9 7 5 13 13 N 1.46904 * 109.47312 * 120.00598 * 2 1 3 14 14 C 1.48071 * 110.99417 * 316.28496 * 13 2 1 15 15 C 1.53703 * 112.46048 * 192.19391 * 14 13 2 16 16 C 1.50794 * 112.10830 * 318.55665 * 15 14 13 17 17 H 1.08997 * 109.62882 * 332.84820 * 16 15 14 18 18 C 1.52992 * 109.79595 * 212.34628 * 16 15 14 19 19 N 1.47918 * 108.49947 * 92.54616 * 16 15 14 20 20 C 1.46901 * 110.99538 * 153.79276 * 19 16 15 21 21 C 1.50704 * 109.46889 * 186.86017 * 20 19 16 22 22 C 1.38232 * 119.99919 * 264.35029 * 21 20 19 23 23 C 1.38237 * 119.99988 * 179.78818 * 22 21 20 24 24 C 1.38235 * 119.99574 * 0.44401 * 23 22 21 25 25 C 1.38232 * 120.00510 * 359.80572 * 24 23 22 26 26 C 1.38238 * 119.99771 * 84.62660 * 21 20 19 27 27 C 1.40007 * 114.06327 * 280.07307 * 19 16 15 28 28 C 1.44567 * 110.99700 * 188.59428 * 13 2 1 29 29 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46697 * 299.99478 * 1 2 3 31 31 H 1.08996 * 109.47244 * 60.00034 * 1 2 3 32 32 H 1.09003 * 109.47152 * 303.33141 * 4 2 1 33 33 H 1.08995 * 109.47036 * 183.33366 * 4 2 1 34 34 H 0.96999 * 119.99255 * 359.97438 * 8 7 5 35 35 H 1.08993 * 108.88463 * 312.97142 * 14 13 2 36 36 H 1.09006 * 108.88209 * 71.43335 * 14 13 2 37 37 H 1.09002 * 108.95220 * 197.87850 * 15 14 13 38 38 H 1.09000 * 108.95244 * 79.24100 * 15 14 13 39 39 H 1.09000 * 109.47396 * 294.35350 * 18 16 15 40 40 H 1.09003 * 109.47219 * 54.35732 * 18 16 15 41 41 H 1.09002 * 109.47348 * 174.34973 * 18 16 15 42 42 H 1.09007 * 109.47057 * 306.85494 * 20 19 16 43 43 H 1.09001 * 109.47486 * 66.85790 * 20 19 16 44 44 H 1.08006 * 120.00095 * 359.97438 * 22 21 20 45 45 H 1.08000 * 119.99664 * 180.27384 * 23 22 21 46 46 H 1.08006 * 119.99563 * 179.83292 * 24 23 22 47 47 H 1.07996 * 120.00184 * 179.97438 * 25 24 23 48 48 H 1.07994 * 120.00218 * 359.97245 * 26 21 20 49 49 H 1.08997 * 108.96707 * 301.13984 * 27 19 16 50 50 H 1.09002 * 108.95789 * 182.47716 * 27 19 16 51 51 H 1.09001 * 109.58016 * 340.15857 * 28 13 2 52 52 H 1.08998 * 109.57325 * 100.54144 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6063 0.0354 -2.4783 6 1 0.9777 0.9082 -2.3813 7 6 2.0118 -0.3867 -3.7267 8 7 2.7776 -1.4494 -3.8448 9 14 1.4746 0.5515 -5.2500 10 1 2.0408 -0.1005 -6.4582 11 1 -0.0079 0.5502 -5.3350 12 1 1.9646 1.9509 -5.1678 13 7 2.0198 -0.6926 1.1994 14 6 1.2546 -0.2820 2.3987 15 6 1.9177 -0.7457 3.7055 16 6 2.4545 -2.1511 3.6020 17 1 1.8804 -2.7087 2.8620 18 6 2.3535 -2.8458 4.9613 19 7 3.8714 -2.0825 3.1830 20 6 4.6138 -3.2641 3.6421 21 6 6.0803 -3.0822 3.3462 22 6 6.6235 -3.6140 2.1917 23 6 7.9678 -3.4434 1.9181 24 6 8.7706 -2.7489 2.8035 25 6 8.2284 -2.2215 3.9606 26 6 6.8833 -2.3884 4.2321 27 6 4.0514 -1.8794 1.8094 28 6 3.4506 -0.5397 1.3379 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6287 -1.7302 -1.2798 33 1 3.1283 -0.7732 -1.2200 34 1 3.0574 -1.9359 -3.0537 35 1 1.1735 0.8048 2.4104 36 1 0.2529 -0.7080 2.3410 37 1 1.1824 -0.7059 4.5092 38 1 2.7385 -0.0698 3.9452 39 1 3.0140 -2.3501 5.6727 40 1 1.3260 -2.7922 5.3213 41 1 2.6483 -3.8901 4.8585 42 1 4.4724 -3.3874 4.7159 43 1 4.2454 -4.1490 3.1231 44 1 5.9971 -4.1603 1.5019 45 1 8.3912 -3.8552 1.0139 46 1 9.8214 -2.6179 2.5911 47 1 8.8557 -1.6792 4.6525 48 1 6.4596 -1.9764 5.1360 49 1 3.5725 -2.6934 1.2652 50 1 5.1185 -1.8866 1.5872 51 1 3.8833 -0.2638 0.3763 52 1 3.6655 0.2358 2.0731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276254987.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:47 Heat of formation + Delta-G solvation = 16.090539 kcal Electronic energy + Delta-G solvation = -27705.151430 eV Core-core repulsion = 24282.481205 eV Total energy + Delta-G solvation = -3422.670225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27597 -39.91784 -38.28066 -35.64099 -34.58194 -33.27406 -32.15745 -31.76746 -29.77158 -29.14554 -27.97305 -25.96141 -25.43100 -24.29378 -23.45944 -22.51315 -21.92286 -20.96535 -20.25710 -18.92767 -17.72017 -17.40830 -16.96290 -16.80681 -16.19095 -16.03144 -15.85065 -15.65774 -15.51822 -15.09263 -14.51378 -14.30914 -14.23443 -14.19996 -13.88067 -13.61585 -13.49537 -13.29746 -13.21655 -13.03703 -12.93863 -12.70413 -12.59697 -12.34699 -12.16336 -12.12982 -11.96175 -11.90762 -11.79081 -11.62204 -11.60847 -11.47560 -11.24409 -10.66552 -10.52550 -9.79914 -9.67263 -9.15309 -9.06990 -8.67455 -6.36616 0.42200 0.51481 1.50831 1.59772 1.78555 2.55469 2.72117 2.94954 3.16886 3.18229 3.78609 3.85415 3.94670 4.02341 4.06165 4.12553 4.15933 4.17411 4.26943 4.29092 4.37069 4.43136 4.46990 4.51314 4.56073 4.61339 4.63077 4.69764 4.77960 4.81595 4.86843 4.90206 4.93350 5.02466 5.02852 5.10965 5.13398 5.15913 5.19920 5.22561 5.27399 5.29766 5.40622 5.51454 5.57838 5.63086 5.71498 5.93459 6.11026 6.19150 6.20114 6.28447 6.34582 6.47365 6.60058 7.45346 8.72738 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.003786 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.195179 B = 7394.076818 C = 9209.259205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.107 3.893 3 H 0.016 0.984 4 C 0.034 3.966 5 C -0.609 4.609 6 H 0.054 0.946 7 C -0.039 4.039 8 N -0.938 5.938 9 Si 1.116 2.884 10 H -0.285 1.285 11 H -0.267 1.267 12 H -0.269 1.269 13 N -0.557 5.557 14 C 0.059 3.941 15 C -0.105 4.105 16 C 0.094 3.906 17 H 0.031 0.969 18 C -0.144 4.144 19 N -0.536 5.536 20 C 0.096 3.904 21 C -0.090 4.090 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.104 4.104 27 C 0.093 3.907 28 C 0.073 3.927 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.051 0.949 32 H -0.019 1.019 33 H -0.017 1.017 34 H 0.252 0.748 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.112 0.888 43 H 0.029 0.971 44 H 0.107 0.893 45 H 0.128 0.872 46 H 0.140 0.860 47 H 0.145 0.855 48 H 0.137 0.863 49 H -0.002 1.002 50 H 0.067 0.933 51 H 0.044 0.956 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -1.750 21.941 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.001 4.001 3 H 0.034 0.966 4 C -0.003 4.003 5 C -0.647 4.647 6 H 0.072 0.928 7 C -0.236 4.236 8 N -0.576 5.576 9 Si 0.937 3.063 10 H -0.210 1.210 11 H -0.192 1.192 12 H -0.195 1.195 13 N -0.282 5.282 14 C -0.067 4.067 15 C -0.143 4.143 16 C -0.013 4.013 17 H 0.050 0.950 18 C -0.202 4.202 19 N -0.260 5.260 20 C -0.030 4.030 21 C -0.090 4.090 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.122 4.122 27 C -0.037 4.037 28 C -0.056 4.056 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.070 0.930 32 H -0.001 1.001 33 H 0.001 0.999 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.047 0.953 44 H 0.125 0.875 45 H 0.146 0.854 46 H 0.158 0.842 47 H 0.163 0.837 48 H 0.155 0.845 49 H 0.016 0.984 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.359 -1.796 20.478 21.244 hybrid contribution -0.070 -0.193 0.553 0.590 sum 5.289 -1.989 21.031 21.777 Atomic orbital electron populations 1.21724 0.93729 1.01282 1.01349 1.21389 0.95946 0.93568 0.89192 0.96615 1.19067 0.93692 0.94438 0.93118 1.22422 1.34327 1.14482 0.93493 0.92788 1.27409 0.94084 0.96977 1.05149 1.70914 1.35195 1.18870 1.32621 0.82956 0.76808 0.74738 0.71768 1.21029 1.19231 1.19458 1.60803 1.03860 1.60259 1.03325 1.22523 0.97646 0.97559 0.88993 1.21480 1.00651 0.96264 0.95922 1.21302 0.86391 0.96518 0.97097 0.95040 1.22036 1.03281 0.99930 0.94921 1.59429 1.12283 1.39237 1.15065 1.21192 0.88966 0.90592 1.02226 1.19922 0.95599 0.98540 0.94983 1.21219 0.95959 1.00865 0.97120 1.21357 0.93821 0.99836 1.00210 1.21449 1.00770 0.97811 0.94567 1.21480 0.95461 0.99728 0.97714 1.21211 0.93693 0.97609 0.99732 1.20729 0.99148 0.95634 0.88231 1.21749 0.88052 0.96821 0.98985 0.93530 0.91203 0.92967 1.00096 0.99890 0.93867 0.95162 0.90758 0.88383 0.91552 0.90709 0.90555 0.92295 0.87047 0.95319 0.87484 0.85404 0.84190 0.83746 0.84470 0.98378 0.91496 0.93764 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 8.20 71.98 0.59 -4.18 16 2 C 0.11 4.67 2.03 44.92 0.09 4.76 16 3 H 0.02 0.73 8.09 -2.39 -0.02 0.71 16 4 C 0.03 1.87 3.84 29.85 0.11 1.99 16 5 C -0.61 -35.52 8.46 25.60 0.22 -35.30 16 6 H 0.05 3.03 6.81 -2.91 -0.02 3.01 16 7 C -0.04 -2.33 5.46 84.65 0.46 -1.87 16 8 N -0.94 -60.22 13.65 21.45 0.29 -59.92 16 9 Si 1.12 51.39 29.90 68.60 2.05 53.44 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 13 N -0.56 -20.77 3.83 -869.92 -3.33 -24.10 16 14 C 0.06 1.71 4.20 86.31 0.36 2.07 16 15 C -0.11 -2.39 4.92 30.11 0.15 -2.24 16 16 C 0.09 2.23 2.43 44.00 0.11 2.33 16 17 H 0.03 0.94 7.57 -2.39 -0.02 0.92 16 18 C -0.14 -2.34 7.73 71.98 0.56 -1.78 16 19 N -0.54 -14.07 4.09 -891.68 -3.65 -17.72 16 20 C 0.10 2.19 4.21 85.56 0.36 2.55 16 21 C -0.09 -2.13 4.41 -19.86 -0.09 -2.22 16 22 C -0.13 -3.42 8.14 22.27 0.18 -3.24 16 23 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 24 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 25 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 26 C -0.10 -2.13 9.72 22.27 0.22 -1.91 16 27 C 0.09 3.13 4.77 87.96 0.42 3.55 16 28 C 0.07 2.70 5.13 87.15 0.45 3.14 16 29 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.07 2.19 6.45 -2.39 -0.02 2.18 16 31 H 0.05 2.15 6.77 -2.39 -0.02 2.13 16 32 H -0.02 -1.16 8.11 -2.39 -0.02 -1.18 16 33 H -0.02 -1.01 6.19 -2.39 -0.01 -1.03 16 34 H 0.25 16.61 7.21 -92.71 -0.67 15.94 16 35 H 0.03 0.86 7.84 -2.39 -0.02 0.84 16 36 H 0.07 2.06 7.00 -2.38 -0.02 2.04 16 37 H 0.10 1.67 7.63 -2.39 -0.02 1.65 16 38 H 0.07 1.59 7.23 -2.39 -0.02 1.57 16 39 H 0.07 1.06 7.76 -2.39 -0.02 1.04 16 40 H 0.08 1.03 7.96 -2.39 -0.02 1.01 16 41 H 0.06 0.92 6.90 -2.39 -0.02 0.91 16 42 H 0.11 1.98 5.81 -2.38 -0.01 1.97 16 43 H 0.03 0.71 8.05 -2.39 -0.02 0.69 16 44 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 47 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 48 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 49 H 0.00 -0.07 8.07 -2.39 -0.02 -0.09 16 50 H 0.07 2.30 5.54 -2.39 -0.01 2.28 16 51 H 0.04 1.92 6.02 -2.39 -0.01 1.91 16 52 H 0.05 1.75 6.93 -2.39 -0.02 1.73 16 Total: -1.00 -69.28 384.96 1.19 -68.09 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.97 Total: 19.90 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 4.86 Total: -39.68 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -6.69 Total: -101.74 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -69.28 1.19 -68.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276254987.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.180 kcal (2) G-P(sol) polarization free energy of solvation -69.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds