Wall clock time and date at job start Tue Mar 31 2020 11:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47418 * 2 1 4 4 C 1.53008 * 109.46725 * 119.99612 * 2 1 3 5 5 C 1.50699 * 109.46875 * 184.99844 * 4 2 1 6 6 H 1.08007 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00251 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46914 * 60.00040 * 9 7 5 11 11 H 1.48494 * 109.47266 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47026 * 300.00561 * 9 7 5 13 13 N 1.46894 * 109.47226 * 239.99656 * 2 1 3 14 14 C 1.46906 * 111.00124 * 306.04542 * 13 2 1 15 15 C 1.46894 * 111.00107 * 70.00164 * 13 2 1 16 16 C 1.53007 * 109.47235 * 75.64088 * 15 13 2 17 17 H 1.08997 * 110.64031 * 301.42679 * 16 15 13 18 18 C 1.54595 * 110.72164 * 64.57651 * 16 15 13 19 19 C 1.53996 * 105.13816 * 140.49718 * 18 16 15 20 20 N 1.47906 * 107.05817 * 1.22518 * 19 18 16 21 21 C 1.46898 * 111.00203 * 214.15945 * 20 19 18 22 22 C 1.50693 * 109.47395 * 69.87075 * 21 20 19 23 23 C 1.38244 * 119.99966 * 269.73179 * 22 21 20 24 24 C 1.38230 * 119.99674 * 179.76732 * 23 22 21 25 25 C 1.38235 * 120.00530 * 0.50524 * 24 23 22 26 26 C 1.38240 * 119.99738 * 359.74309 * 25 24 23 27 27 C 1.38231 * 120.00456 * 90.00007 * 22 21 20 28 28 C 1.48540 * 105.81914 * 334.66936 * 20 19 18 29 29 H 1.08998 * 109.47400 * 300.00633 * 1 2 3 30 30 H 1.09004 * 109.46469 * 60.00081 * 1 2 3 31 31 H 1.09000 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47004 * 304.99972 * 4 2 1 33 33 H 1.08997 * 109.47217 * 65.00230 * 4 2 1 34 34 H 0.96991 * 120.00583 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47073 * 188.83137 * 14 13 2 36 36 H 1.08996 * 109.47033 * 308.83261 * 14 13 2 37 37 H 1.08997 * 109.46494 * 68.83223 * 14 13 2 38 38 H 1.09000 * 109.47306 * 315.64309 * 15 13 2 39 39 H 1.09005 * 109.47522 * 195.63895 * 15 13 2 40 40 H 1.08996 * 110.31034 * 21.58030 * 18 16 15 41 41 H 1.09000 * 110.39203 * 259.45139 * 18 16 15 42 42 H 1.09000 * 109.92012 * 241.87285 * 19 18 16 43 43 H 1.09005 * 109.91758 * 120.57394 * 19 18 16 44 44 H 1.09006 * 109.46649 * 309.87407 * 21 20 19 45 45 H 1.08999 * 109.47210 * 189.87223 * 21 20 19 46 46 H 1.08003 * 119.99618 * 359.97438 * 23 22 21 47 47 H 1.08007 * 119.99988 * 180.22883 * 24 23 22 48 48 H 1.07997 * 120.00389 * 179.72860 * 25 24 23 49 49 H 1.07993 * 119.99844 * 179.97438 * 26 25 24 50 50 H 1.08011 * 119.99592 * 0.02562 * 27 22 21 51 51 H 1.09001 * 110.66452 * 157.64207 * 28 20 19 52 52 H 1.08998 * 110.66600 * 280.77255 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6149 1.3129 6 1 4.0789 -0.0855 0.5397 7 6 4.2302 -1.1926 2.3585 8 7 3.5763 -1.8368 3.3003 9 14 6.0919 -1.0603 2.4377 10 1 6.4843 0.3708 2.4968 11 1 6.5868 -1.7603 3.6501 12 1 6.6845 -1.6864 1.2285 13 7 2.0197 -0.6925 -1.1993 14 6 1.4344 -2.0356 -1.3077 15 6 1.7530 0.0971 -2.4090 16 6 2.7459 1.2585 -2.4891 17 1 2.6685 1.8918 -1.6053 18 6 4.1896 0.7331 -2.6610 19 6 4.8523 1.6984 -3.6614 20 7 3.8451 2.7252 -4.0058 21 6 3.9888 3.1559 -5.4028 22 6 3.5671 2.0367 -6.3195 23 6 4.4983 1.1130 -6.7564 24 6 4.1105 0.0836 -7.5934 25 6 2.7937 -0.0162 -8.0021 26 6 1.8636 0.9104 -7.5694 27 6 2.2504 1.9368 -6.7282 28 6 2.5228 2.0876 -3.7788 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7715 1.2058 34 1 4.0605 -2.2435 4.0357 35 1 1.9278 -2.5833 -2.1105 36 1 1.5712 -2.5685 -0.3668 37 1 0.3698 -1.9513 -1.5261 38 1 0.7370 0.4898 -2.3699 39 1 1.8639 -0.5370 -3.2887 40 1 4.1782 -0.2797 -3.0635 41 1 4.7177 0.7549 -1.7078 42 1 5.1513 1.1560 -4.5583 43 1 5.7213 2.1699 -3.2023 44 1 5.0299 3.4131 -5.5984 45 1 3.3595 4.0280 -5.5808 46 1 5.5281 1.1939 -6.4410 47 1 4.8372 -0.6402 -7.9318 48 1 2.4916 -0.8180 -8.6596 49 1 0.8350 0.8326 -7.8890 50 1 1.5238 2.6612 -6.3907 51 1 1.7532 2.8434 -3.6221 52 1 2.2608 1.4375 -4.6135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276359925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:42 Heat of formation + Delta-G solvation = 34.688954 kcal Electronic energy + Delta-G solvation = -27634.367510 eV Core-core repulsion = 24212.503772 eV Total energy + Delta-G solvation = -3421.863738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29288 -38.56025 -37.34322 -33.69450 -32.66123 -31.27211 -30.93698 -29.87242 -28.96588 -27.30314 -26.62148 -24.96604 -23.78992 -22.84701 -22.25853 -21.79137 -20.44024 -20.02375 -18.26255 -16.99935 -16.23336 -15.96171 -15.82266 -15.31970 -15.26853 -15.13346 -14.56097 -14.19409 -13.81870 -13.64581 -13.56594 -13.29435 -13.13676 -12.95844 -12.42590 -12.26000 -12.08796 -11.78748 -11.65290 -11.47917 -11.43058 -11.40263 -11.31747 -11.15152 -10.99882 -10.71226 -10.64183 -10.48949 -10.36283 -10.34929 -10.24592 -9.69141 -9.11844 -9.07853 -8.93117 -8.91719 -8.37809 -8.20725 -7.38494 -5.84258 -3.81421 1.12443 1.18909 3.43703 3.47222 3.50761 3.55515 4.10477 4.51523 4.58630 4.60210 4.65141 4.78991 4.89729 4.96493 5.06545 5.17863 5.28802 5.30392 5.44049 5.47213 5.53490 5.57641 5.67353 5.77040 5.79192 5.81139 5.82079 5.85324 5.86982 5.96604 5.99715 6.04684 6.10146 6.21835 6.23391 6.25355 6.30501 6.34006 6.36720 6.52555 6.62312 6.67156 6.74107 6.77084 6.78852 6.99149 7.04462 7.07488 7.59901 7.73977 7.97736 8.09379 8.17965 8.63939 9.24338 9.79842 11.27934 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.003547 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.137375 B = 7892.062607 C = 8628.982651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.070 0.930 4 C 0.030 3.970 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.906 5.906 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.511 5.511 14 C 0.028 3.972 15 C 0.062 3.938 16 C -0.079 4.079 17 H 0.082 0.918 18 C -0.108 4.108 19 C 0.024 3.976 20 N -0.504 5.504 21 C 0.081 3.919 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.107 4.107 28 C 0.029 3.971 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.257 0.743 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.012 0.988 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.074 0.926 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 6.508 -22.111 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.233 5.233 14 C -0.120 4.120 15 C -0.066 4.066 16 C -0.098 4.098 17 H 0.101 0.899 18 C -0.146 4.146 19 C -0.104 4.104 20 N -0.226 5.226 21 C -0.047 4.047 22 C -0.117 4.117 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.125 4.125 28 C -0.099 4.099 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.092 0.908 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.293 6.848 -21.555 22.733 hybrid contribution 0.036 -0.737 -0.516 0.901 sum -2.257 6.111 -22.071 23.012 Atomic orbital electron populations 1.22514 1.00036 1.01228 1.00525 1.21938 0.89814 0.98498 0.92027 0.91223 1.19193 0.96358 0.95281 0.89823 1.21133 0.91772 1.32745 1.06791 0.92131 1.24994 0.97846 0.95990 0.96048 1.69949 1.35240 1.37102 1.12402 0.86733 0.86609 0.78013 0.77048 1.20471 1.21744 1.20401 1.62064 1.58288 1.01830 1.01133 1.22350 0.95389 0.91518 1.02772 1.22064 0.96128 0.94679 0.93766 1.21973 0.95093 0.95717 0.97039 0.89936 1.22221 0.95231 0.97708 0.99409 1.23092 0.95839 0.92776 0.98669 1.65137 1.03501 1.35888 1.18047 1.21389 1.02081 0.95009 0.86201 1.20624 0.94095 0.98702 0.98312 1.21116 0.99313 0.94955 0.97445 1.21160 0.96316 0.98221 0.98127 1.21150 0.93508 0.99055 1.00226 1.21146 0.99506 0.95260 0.98102 1.21072 0.95565 0.98549 0.97348 1.23482 0.91507 0.97095 0.97856 0.92652 0.94204 0.92944 0.96549 0.96341 0.93346 0.92988 0.90130 0.96941 0.95308 0.92267 0.91599 0.90244 0.93427 0.90702 0.90120 0.89901 0.86107 0.86159 0.86256 0.86165 0.86123 0.90750 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.47 37.16 0.31 -2.89 16 2 C 0.09 1.73 2.17 -67.71 -0.15 1.58 16 3 H 0.07 1.46 6.64 -51.93 -0.35 1.11 16 4 C 0.03 0.77 4.38 -27.88 -0.12 0.65 16 5 C -0.49 -13.52 8.84 -34.44 -0.30 -13.82 16 6 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.43 13.29 55.43 0.74 -26.69 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.51 -9.54 4.12 -234.88 -0.97 -10.51 16 14 C 0.03 0.49 8.51 60.07 0.51 1.01 16 15 C 0.06 0.97 4.23 -3.82 -0.02 0.95 16 16 C -0.08 -1.19 3.08 -88.76 -0.27 -1.46 16 17 H 0.08 1.40 6.82 -51.93 -0.35 1.05 16 18 C -0.11 -1.67 6.28 -25.37 -0.16 -1.83 16 19 C 0.02 0.31 6.46 -2.75 -0.02 0.29 16 20 N -0.50 -6.30 5.54 -231.88 -1.28 -7.58 16 21 C 0.08 0.83 5.69 -4.98 -0.03 0.80 16 22 C -0.12 -1.18 3.95 -104.63 -0.41 -1.59 16 23 C -0.11 -1.11 8.19 -39.58 -0.32 -1.43 16 24 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.03 7.49 -39.59 -0.30 -1.33 16 28 C 0.03 0.36 5.51 -1.90 -0.01 0.35 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.62 6.45 -51.93 -0.34 0.28 16 31 H 0.05 0.91 6.53 -51.93 -0.34 0.57 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.50 6.18 -51.93 -0.32 0.18 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.62 6.04 -51.93 -0.31 1.31 16 37 H 0.01 0.20 6.76 -51.93 -0.35 -0.15 16 38 H 0.03 0.43 6.18 -51.93 -0.32 0.11 16 39 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 40 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.05 0.58 4.88 -51.93 -0.25 0.32 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 45 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 46 H 0.12 1.11 7.19 -52.48 -0.38 0.73 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.06 0.72 4.77 -51.93 -0.25 0.47 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -30.08 390.08 -12.22 -42.30 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.98 Total: 1.42 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.58 Total: -21.94 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -1.52 Total: -44.78 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.08 -12.22 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276359925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.986 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds