Wall clock time and date at job start Tue Mar 31 2020 11:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47418 * 2 1 4 4 C 1.53008 * 109.46725 * 119.99612 * 2 1 3 5 5 C 1.50699 * 109.46875 * 184.99844 * 4 2 1 6 6 H 1.08007 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00251 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46914 * 60.00040 * 9 7 5 11 11 H 1.48494 * 109.47266 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47026 * 300.00561 * 9 7 5 13 13 N 1.46894 * 109.47226 * 239.99656 * 2 1 3 14 14 C 1.46906 * 111.00124 * 306.04542 * 13 2 1 15 15 C 1.46894 * 111.00107 * 70.00164 * 13 2 1 16 16 C 1.53007 * 109.47235 * 75.64088 * 15 13 2 17 17 H 1.08997 * 110.64031 * 301.42679 * 16 15 13 18 18 C 1.54595 * 110.72164 * 64.57651 * 16 15 13 19 19 C 1.53996 * 105.13816 * 140.49718 * 18 16 15 20 20 N 1.47906 * 107.05817 * 1.22518 * 19 18 16 21 21 C 1.46898 * 111.00203 * 214.15945 * 20 19 18 22 22 C 1.50693 * 109.47395 * 69.87075 * 21 20 19 23 23 C 1.38244 * 119.99966 * 269.73179 * 22 21 20 24 24 C 1.38230 * 119.99674 * 179.76732 * 23 22 21 25 25 C 1.38235 * 120.00530 * 0.50524 * 24 23 22 26 26 C 1.38240 * 119.99738 * 359.74309 * 25 24 23 27 27 C 1.38231 * 120.00456 * 90.00007 * 22 21 20 28 28 C 1.48540 * 105.81914 * 334.66936 * 20 19 18 29 29 H 1.08998 * 109.47400 * 300.00633 * 1 2 3 30 30 H 1.09004 * 109.46469 * 60.00081 * 1 2 3 31 31 H 1.09000 * 109.47176 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47004 * 304.99972 * 4 2 1 33 33 H 1.08997 * 109.47217 * 65.00230 * 4 2 1 34 34 H 0.96991 * 120.00583 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47073 * 188.83137 * 14 13 2 36 36 H 1.08996 * 109.47033 * 308.83261 * 14 13 2 37 37 H 1.08997 * 109.46494 * 68.83223 * 14 13 2 38 38 H 1.09000 * 109.47306 * 315.64309 * 15 13 2 39 39 H 1.09005 * 109.47522 * 195.63895 * 15 13 2 40 40 H 1.08996 * 110.31034 * 21.58030 * 18 16 15 41 41 H 1.09000 * 110.39203 * 259.45139 * 18 16 15 42 42 H 1.09000 * 109.92012 * 241.87285 * 19 18 16 43 43 H 1.09005 * 109.91758 * 120.57394 * 19 18 16 44 44 H 1.09006 * 109.46649 * 309.87407 * 21 20 19 45 45 H 1.08999 * 109.47210 * 189.87223 * 21 20 19 46 46 H 1.08003 * 119.99618 * 359.97438 * 23 22 21 47 47 H 1.08007 * 119.99988 * 180.22883 * 24 23 22 48 48 H 1.07997 * 120.00389 * 179.72860 * 25 24 23 49 49 H 1.07993 * 119.99844 * 179.97438 * 26 25 24 50 50 H 1.08011 * 119.99592 * 0.02562 * 27 22 21 51 51 H 1.09001 * 110.66452 * 157.64207 * 28 20 19 52 52 H 1.08998 * 110.66600 * 280.77255 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6149 1.3129 6 1 4.0789 -0.0855 0.5397 7 6 4.2302 -1.1926 2.3585 8 7 3.5763 -1.8368 3.3003 9 14 6.0919 -1.0603 2.4377 10 1 6.4843 0.3708 2.4968 11 1 6.5868 -1.7603 3.6501 12 1 6.6845 -1.6864 1.2285 13 7 2.0197 -0.6925 -1.1993 14 6 1.4344 -2.0356 -1.3077 15 6 1.7530 0.0971 -2.4090 16 6 2.7459 1.2585 -2.4891 17 1 2.6685 1.8918 -1.6053 18 6 4.1896 0.7331 -2.6610 19 6 4.8523 1.6984 -3.6614 20 7 3.8451 2.7252 -4.0058 21 6 3.9888 3.1559 -5.4028 22 6 3.5671 2.0367 -6.3195 23 6 4.4983 1.1130 -6.7564 24 6 4.1105 0.0836 -7.5934 25 6 2.7937 -0.0162 -8.0021 26 6 1.8636 0.9104 -7.5694 27 6 2.2504 1.9368 -6.7282 28 6 2.5228 2.0876 -3.7788 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7715 1.2058 34 1 4.0605 -2.2435 4.0357 35 1 1.9278 -2.5833 -2.1105 36 1 1.5712 -2.5685 -0.3668 37 1 0.3698 -1.9513 -1.5261 38 1 0.7370 0.4898 -2.3699 39 1 1.8639 -0.5370 -3.2887 40 1 4.1782 -0.2797 -3.0635 41 1 4.7177 0.7549 -1.7078 42 1 5.1513 1.1560 -4.5583 43 1 5.7213 2.1699 -3.2023 44 1 5.0299 3.4131 -5.5984 45 1 3.3595 4.0280 -5.5808 46 1 5.5281 1.1939 -6.4410 47 1 4.8372 -0.6402 -7.9318 48 1 2.4916 -0.8180 -8.6596 49 1 0.8350 0.8326 -7.8890 50 1 1.5238 2.6612 -6.3907 51 1 1.7532 2.8434 -3.6221 52 1 2.2608 1.4375 -4.6135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276359925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:41 Heat of formation + Delta-G solvation = 17.803883 kcal Electronic energy + Delta-G solvation = -27635.099702 eV Core-core repulsion = 24212.503772 eV Total energy + Delta-G solvation = -3422.595929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16557 -39.72945 -38.54146 -35.16583 -34.31825 -32.40330 -31.91502 -31.06200 -30.04307 -29.17404 -27.74338 -26.09441 -25.43322 -24.12042 -23.40704 -22.65991 -21.35507 -21.32272 -19.77331 -18.34404 -17.71956 -17.15057 -16.85109 -16.70685 -16.50661 -16.06253 -15.95526 -15.45671 -14.95209 -14.90967 -14.60494 -14.38437 -14.24703 -14.10735 -13.83878 -13.70359 -13.33516 -13.22977 -13.06842 -12.84892 -12.72963 -12.55924 -12.51373 -12.37408 -12.32427 -12.19219 -12.10178 -11.92801 -11.84684 -11.63429 -11.57205 -11.21603 -11.06451 -10.93220 -10.43870 -9.78233 -9.64470 -9.31768 -8.82916 -8.07271 -6.10898 0.42487 0.49901 1.41792 1.44193 1.51419 2.48794 2.83563 3.10658 3.21808 3.30668 3.79002 3.87802 3.94299 3.99635 4.03026 4.15618 4.25641 4.29040 4.34392 4.36794 4.43704 4.48270 4.55272 4.61842 4.62906 4.66688 4.72389 4.77482 4.78182 4.81479 4.87811 4.91729 5.01775 5.07581 5.12698 5.14174 5.16053 5.18941 5.24247 5.32935 5.38710 5.47121 5.54539 5.56874 5.63374 5.65697 5.74530 5.93523 5.97717 6.11535 6.12552 6.36732 6.50553 6.58790 7.03022 7.54427 9.04847 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.003547 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.137375 B = 7892.062607 C = 8628.982651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.061 0.939 4 C 0.036 3.964 5 C -0.492 4.492 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.942 5.942 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.531 5.531 14 C 0.033 3.967 15 C 0.070 3.930 16 C -0.078 4.078 17 H 0.059 0.941 18 C -0.106 4.106 19 C 0.031 3.969 20 N -0.514 5.514 21 C 0.083 3.917 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.115 4.115 28 C 0.041 3.959 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.052 0.948 32 H -0.012 1.012 33 H -0.003 1.003 34 H 0.257 0.743 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.131 0.869 51 H 0.084 0.916 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 7.207 -24.646 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.079 0.921 4 C -0.001 4.001 5 C -0.530 4.530 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.585 5.585 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.254 5.254 14 C -0.115 4.115 15 C -0.058 4.058 16 C -0.098 4.098 17 H 0.078 0.922 18 C -0.144 4.144 19 C -0.097 4.097 20 N -0.236 5.236 21 C -0.044 4.044 22 C -0.127 4.127 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.134 4.134 28 C -0.087 4.087 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.006 0.994 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.142 0.858 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.156 0.844 50 H 0.149 0.851 51 H 0.102 0.898 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.559 7.559 -24.111 25.398 hybrid contribution 0.106 -0.969 0.230 1.002 sum -2.453 6.590 -23.882 24.895 Atomic orbital electron populations 1.22383 0.97497 1.01641 1.01822 1.21578 0.91750 0.97152 0.90701 0.92084 1.19054 0.95219 0.94352 0.91446 1.21448 0.93205 1.31973 1.06413 0.92372 1.25803 1.02515 0.95838 0.95839 1.70081 1.37010 1.38262 1.13105 0.85716 0.81115 0.78322 0.77158 1.19613 1.21407 1.19721 1.61942 1.59151 1.02533 1.01754 1.22270 0.96878 0.90842 1.01518 1.22052 0.96832 0.94496 0.92403 1.21919 0.94672 0.95596 0.97571 0.92208 1.22123 0.95721 0.98130 0.98419 1.22980 0.95762 0.92542 0.98371 1.65130 1.03086 1.35389 1.19953 1.21425 1.02859 0.95362 0.84778 1.20646 0.94504 0.98770 0.98748 1.21277 0.99649 0.95344 0.97918 1.21413 0.97020 0.98413 0.98066 1.21452 0.93396 0.99530 1.00258 1.21434 1.00510 0.94950 0.97748 1.21268 0.95574 0.99011 0.97498 1.23374 0.91903 0.97010 0.96401 0.92727 0.91515 0.92931 0.99400 0.98441 0.93390 0.91516 0.93396 0.94843 0.93987 0.91113 0.92313 0.93509 0.92246 0.90967 0.89489 0.88780 0.85773 0.84900 0.84518 0.84378 0.85079 0.89751 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 8.47 71.98 0.61 -5.26 16 2 C 0.10 3.94 2.17 44.92 0.10 4.03 16 3 H 0.06 2.59 6.64 -2.39 -0.02 2.57 16 4 C 0.04 1.91 4.38 29.85 0.13 2.04 16 5 C -0.49 -28.12 8.84 25.60 0.23 -27.89 16 6 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 9 Si 0.95 46.14 29.54 68.60 2.03 48.17 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.53 -19.58 4.12 -897.04 -3.70 -23.28 16 14 C 0.03 1.14 8.51 127.69 1.09 2.23 16 15 C 0.07 2.05 4.23 86.31 0.36 2.42 16 16 C -0.08 -2.27 3.08 -9.59 -0.03 -2.30 16 17 H 0.06 2.03 6.82 -2.39 -0.02 2.01 16 18 C -0.11 -3.27 6.28 31.47 0.20 -3.07 16 19 C 0.03 0.79 6.46 86.45 0.56 1.34 16 20 N -0.51 -11.93 5.54 -887.54 -4.91 -16.85 16 21 C 0.08 1.51 5.69 85.56 0.49 2.00 16 22 C -0.12 -2.28 3.95 -19.87 -0.08 -2.36 16 23 C -0.12 -2.26 8.19 22.27 0.18 -2.08 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 25 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 27 C -0.11 -1.93 7.49 22.27 0.17 -1.76 16 28 C 0.04 0.95 5.51 86.65 0.48 1.43 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.89 6.45 -2.38 -0.02 1.87 16 31 H 0.05 1.76 6.53 -2.39 -0.02 1.74 16 32 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.00 -0.15 6.18 -2.39 -0.01 -0.16 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.97 6.04 -2.39 -0.01 1.95 16 37 H 0.03 1.01 6.76 -2.39 -0.02 0.99 16 38 H 0.04 1.13 6.18 -2.39 -0.01 1.12 16 39 H 0.07 1.93 7.91 -2.38 -0.02 1.91 16 40 H 0.06 1.87 7.83 -2.39 -0.02 1.85 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.36 4.88 -2.39 -0.01 1.35 16 43 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.09 1.46 8.02 -2.38 -0.02 1.44 16 45 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 46 H 0.12 2.09 7.19 -2.91 -0.02 2.07 16 47 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 49 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 50 H 0.13 1.85 8.06 -2.90 -0.02 1.83 16 51 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.07 1.44 4.77 -2.39 -0.01 1.42 16 Total: -1.00 -65.63 390.08 0.18 -65.45 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.87 Total: 19.36 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 5.61 Total: -34.60 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -8.33 Total: -98.38 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -65.63 0.18 -65.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276359925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.250 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds