Wall clock time and date at job start Tue Mar 31 2020 11:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47141 * 240.00516 * 2 1 3 5 5 C 1.50706 * 109.47070 * 175.00288 * 4 2 1 6 6 H 1.07991 * 120.00165 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99998 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00022 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47225 * 90.00010 * 9 7 5 11 11 H 1.48505 * 109.47113 * 210.00108 * 9 7 5 12 12 H 1.48503 * 109.47021 * 329.99560 * 9 7 5 13 13 N 1.46896 * 109.47153 * 120.00067 * 2 1 3 14 14 C 1.46907 * 110.99805 * 58.95364 * 13 2 1 15 15 C 1.46899 * 111.00152 * 295.00303 * 13 2 1 16 16 C 1.52997 * 109.47254 * 189.99788 * 15 13 2 17 17 H 1.09007 * 110.28841 * 304.33041 * 16 15 13 18 18 C 1.54266 * 110.32658 * 66.45052 * 16 15 13 19 19 C 1.54378 * 105.05976 * 118.89475 * 18 16 15 20 20 N 1.48560 * 104.59623 * 23.85839 * 19 18 16 21 21 C 1.46894 * 111.00238 * 200.95710 * 20 19 18 22 22 C 1.50698 * 109.47042 * 290.12658 * 21 20 19 23 23 C 1.38229 * 119.99729 * 269.72181 * 22 21 20 24 24 C 1.38240 * 119.99696 * 179.76480 * 23 22 21 25 25 C 1.38228 * 119.99979 * 0.51320 * 24 23 22 26 26 C 1.38237 * 120.00248 * 359.74480 * 25 24 23 27 27 C 1.38236 * 119.99972 * 90.00269 * 22 21 20 28 28 C 1.48570 * 104.21904 * 320.51436 * 20 19 18 29 29 H 1.08993 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47021 * 299.99948 * 1 2 3 31 31 H 1.09006 * 109.46785 * 59.99479 * 1 2 3 32 32 H 1.09008 * 109.47052 * 294.99899 * 4 2 1 33 33 H 1.09002 * 109.47485 * 54.99865 * 4 2 1 34 34 H 0.97002 * 119.99879 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47407 * 296.04618 * 14 13 2 36 36 H 1.09006 * 109.46770 * 56.04664 * 14 13 2 37 37 H 1.09003 * 109.46848 * 176.04346 * 14 13 2 38 38 H 1.09002 * 109.47043 * 309.99859 * 15 13 2 39 39 H 1.09001 * 109.47354 * 69.99921 * 15 13 2 40 40 H 1.08990 * 110.32664 * 237.79505 * 18 16 15 41 41 H 1.09011 * 110.31951 * 0.02562 * 18 16 15 42 42 H 1.09000 * 110.40726 * 142.63922 * 19 18 16 43 43 H 1.09003 * 110.41258 * 265.07722 * 19 18 16 44 44 H 1.09004 * 109.46995 * 50.12485 * 21 20 19 45 45 H 1.08998 * 109.47416 * 170.12384 * 21 20 19 46 46 H 1.08004 * 120.00287 * 0.02562 * 23 22 21 47 47 H 1.07998 * 119.99719 * 180.22831 * 24 23 22 48 48 H 1.08005 * 120.00050 * 179.72339 * 25 24 23 49 49 H 1.07993 * 120.00127 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.00358 * 359.97438 * 27 22 21 51 51 H 1.08995 * 110.41056 * 280.70464 * 28 20 19 52 52 H 1.08994 * 110.40775 * 158.25959 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2306 -1.1934 -2.3578 8 7 3.5766 -1.8384 -3.2990 9 14 6.0921 -1.0610 -2.4368 10 1 6.7010 -2.2130 -1.7245 11 1 6.5292 -1.0694 -3.8560 12 1 6.5261 0.2048 -1.7928 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0762 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.3788 -0.5663 3.6185 17 1 2.1670 -1.6332 3.6911 18 6 3.8983 -0.3290 3.4971 19 6 4.2724 0.5157 4.7340 20 7 3.2080 0.2179 5.7266 21 6 3.1237 1.2763 6.7417 22 6 4.3453 1.2257 7.6228 23 6 4.3391 0.4531 8.7690 24 6 5.4613 0.4028 9.5747 25 6 6.5859 1.1334 9.2396 26 6 6.5903 1.9102 8.0962 27 6 5.4699 1.9563 7.2877 28 6 1.9628 0.1548 4.9186 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 4.0610 -2.2451 -4.0345 35 1 0.4420 -2.0732 1.3346 36 1 1.8168 -2.5950 0.3316 37 1 1.9618 -2.5869 2.1057 38 1 1.9297 1.0869 2.3125 39 1 0.5722 -0.0346 2.5726 40 1 4.4323 -1.2790 3.5118 41 1 4.1238 0.2193 2.5823 42 1 5.2466 0.2146 5.1193 43 1 4.2729 1.5766 4.4838 44 1 3.0703 2.2478 6.2502 45 1 2.2311 1.1270 7.3492 46 1 3.4590 -0.1145 9.0330 47 1 5.4578 -0.2037 10.4683 48 1 7.4612 1.0976 9.8714 49 1 7.4688 2.4813 7.8347 50 1 5.4733 2.5632 6.3944 51 1 1.6019 1.1592 4.6974 52 1 1.1981 -0.4180 5.4430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276361001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:44 Heat of formation + Delta-G solvation = 29.931883 kcal Electronic energy + Delta-G solvation = -26654.471827 eV Core-core repulsion = 23232.401807 eV Total energy + Delta-G solvation = -3422.070020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88129 -38.84938 -37.43732 -33.90897 -32.66716 -31.19376 -31.06525 -29.75805 -28.95812 -27.42075 -26.46330 -25.36119 -23.70709 -22.80745 -22.31715 -21.74945 -20.82887 -19.45464 -18.63185 -16.92722 -16.25247 -16.15251 -15.77769 -15.45891 -15.32838 -15.15814 -14.44552 -14.09493 -13.97346 -13.72592 -13.55587 -13.37517 -13.04846 -12.91710 -12.63408 -12.24666 -12.21634 -11.93615 -11.76329 -11.62054 -11.44675 -11.43739 -11.19396 -11.07411 -11.04215 -10.91361 -10.65459 -10.56816 -10.40193 -10.32463 -10.08828 -9.89054 -9.13887 -9.09391 -8.98977 -8.95894 -8.51697 -8.24185 -7.43035 -5.87607 -3.85280 1.14823 1.22843 3.40437 3.46349 3.50073 3.52071 4.10047 4.45931 4.55066 4.57827 4.65531 4.81461 4.88147 4.95474 5.01505 5.03450 5.21609 5.30133 5.35887 5.38014 5.46984 5.49727 5.58333 5.67092 5.71948 5.74332 5.77821 5.81224 5.85666 5.92305 5.96682 6.00600 6.05589 6.14651 6.22494 6.25439 6.26638 6.32339 6.42620 6.49265 6.51487 6.57393 6.67927 6.79162 6.80894 6.88348 6.94826 6.99927 7.56010 7.72068 7.94496 8.05124 8.14425 8.59568 9.20802 9.76455 11.24399 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002823 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.819593 B = 9915.572419 C =11296.506800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.511 5.511 14 C 0.024 3.976 15 C 0.061 3.939 16 C -0.085 4.085 17 H 0.079 0.921 18 C -0.108 4.108 19 C 0.032 3.968 20 N -0.505 5.505 21 C 0.081 3.919 22 C -0.073 4.073 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.112 4.112 28 C 0.038 3.962 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.257 0.743 35 H 0.013 0.987 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.040 0.960 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.043 0.957 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 6.193 23.770 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.233 5.233 14 C -0.124 4.124 15 C -0.068 4.068 16 C -0.104 4.104 17 H 0.097 0.903 18 C -0.146 4.146 19 C -0.096 4.096 20 N -0.229 5.229 21 C -0.046 4.046 22 C -0.073 4.073 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.131 4.131 28 C -0.090 4.090 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.062 0.938 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.472 5.598 23.866 24.518 hybrid contribution 0.013 0.786 -0.471 0.917 sum -0.459 6.385 23.395 24.255 Atomic orbital electron populations 1.22521 0.99944 1.01282 1.00542 1.21918 0.89925 0.98327 0.91987 0.91461 1.19236 0.96383 0.95433 0.89839 1.21166 0.91761 1.32882 1.06919 0.92139 1.25006 0.97969 0.95928 0.96008 1.69965 1.35182 1.36981 1.12402 0.86641 0.86494 0.78360 0.76732 1.20887 1.21678 1.20040 1.62074 1.58936 1.01687 1.00649 1.22424 0.96134 0.90914 1.02964 1.22160 0.96229 0.97860 0.90529 1.21880 0.95838 1.00288 0.92399 0.90288 1.22237 0.94906 1.00402 0.97051 1.23214 0.95872 0.98153 0.92318 1.65436 1.04309 1.41648 1.11459 1.21197 0.95812 0.93695 0.93944 1.19729 0.95339 0.96934 0.95321 1.21017 0.98486 0.98027 0.94375 1.21141 0.93525 0.99584 0.99826 1.21139 0.98271 0.97458 0.97336 1.21124 0.98197 0.99450 0.95158 1.21089 0.93071 0.99518 0.99415 1.23144 0.92588 0.99430 0.93880 0.92889 0.94247 0.92671 0.96118 0.96466 0.93352 0.96835 0.89901 0.92662 0.91661 0.95744 0.91366 0.89686 0.90519 0.94167 0.93782 0.90082 0.86079 0.86217 0.86323 0.86186 0.86350 0.93843 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.50 37.16 0.32 -2.83 16 2 C 0.09 1.73 2.29 -67.71 -0.16 1.58 16 3 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 4 C 0.03 0.70 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.55 8.84 -34.44 -0.30 -13.86 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -9.37 4.19 -234.88 -0.98 -10.35 16 14 C 0.02 0.42 8.53 60.07 0.51 0.93 16 15 C 0.06 0.91 3.48 -3.83 -0.01 0.89 16 16 C -0.08 -1.13 2.98 -89.24 -0.27 -1.40 16 17 H 0.08 1.11 6.42 -51.92 -0.33 0.77 16 18 C -0.11 -1.54 6.47 -25.35 -0.16 -1.70 16 19 C 0.03 0.40 5.47 -2.18 -0.01 0.38 16 20 N -0.50 -5.89 5.36 -231.41 -1.24 -7.13 16 21 C 0.08 0.81 4.97 -4.98 -0.02 0.79 16 22 C -0.07 -0.74 5.10 -104.63 -0.53 -1.28 16 23 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 26 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 27 C -0.11 -1.11 8.73 -39.58 -0.35 -1.46 16 28 C 0.04 0.43 6.03 -2.18 -0.01 0.42 16 29 H 0.05 0.91 6.48 -51.93 -0.34 0.57 16 30 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.55 6.10 -51.92 -0.32 0.23 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.01 0.22 6.51 -51.93 -0.34 -0.12 16 36 H 0.08 1.70 6.03 -51.93 -0.31 1.39 16 37 H 0.05 0.89 6.40 -51.93 -0.33 0.55 16 38 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 39 H 0.02 0.35 6.94 -51.93 -0.36 -0.01 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.38 7.64 -51.92 -0.40 0.98 16 42 H 0.08 0.97 7.81 -51.93 -0.41 0.57 16 43 H 0.04 0.48 7.82 -51.93 -0.41 0.07 16 44 H 0.04 0.43 7.82 -51.93 -0.41 0.02 16 45 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 46 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.04 0.48 7.72 -51.93 -0.40 0.08 16 52 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -29.89 398.09 -12.60 -42.49 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -9.29 Total: -0.16 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.80 Total: -21.41 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -1.49 Total: -43.95 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.89 -12.60 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276361001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.423 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds