Wall clock time and date at job start Tue Mar 31 2020 11:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47141 * 240.00516 * 2 1 3 5 5 C 1.50706 * 109.47070 * 175.00288 * 4 2 1 6 6 H 1.07991 * 120.00165 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99998 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00022 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47225 * 90.00010 * 9 7 5 11 11 H 1.48505 * 109.47113 * 210.00108 * 9 7 5 12 12 H 1.48503 * 109.47021 * 329.99560 * 9 7 5 13 13 N 1.46896 * 109.47153 * 120.00067 * 2 1 3 14 14 C 1.46907 * 110.99805 * 58.95364 * 13 2 1 15 15 C 1.46899 * 111.00152 * 295.00303 * 13 2 1 16 16 C 1.52997 * 109.47254 * 189.99788 * 15 13 2 17 17 H 1.09007 * 110.28841 * 304.33041 * 16 15 13 18 18 C 1.54266 * 110.32658 * 66.45052 * 16 15 13 19 19 C 1.54378 * 105.05976 * 118.89475 * 18 16 15 20 20 N 1.48560 * 104.59623 * 23.85839 * 19 18 16 21 21 C 1.46894 * 111.00238 * 200.95710 * 20 19 18 22 22 C 1.50698 * 109.47042 * 290.12658 * 21 20 19 23 23 C 1.38229 * 119.99729 * 269.72181 * 22 21 20 24 24 C 1.38240 * 119.99696 * 179.76480 * 23 22 21 25 25 C 1.38228 * 119.99979 * 0.51320 * 24 23 22 26 26 C 1.38237 * 120.00248 * 359.74480 * 25 24 23 27 27 C 1.38236 * 119.99972 * 90.00269 * 22 21 20 28 28 C 1.48570 * 104.21904 * 320.51436 * 20 19 18 29 29 H 1.08993 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47021 * 299.99948 * 1 2 3 31 31 H 1.09006 * 109.46785 * 59.99479 * 1 2 3 32 32 H 1.09008 * 109.47052 * 294.99899 * 4 2 1 33 33 H 1.09002 * 109.47485 * 54.99865 * 4 2 1 34 34 H 0.97002 * 119.99879 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.47407 * 296.04618 * 14 13 2 36 36 H 1.09006 * 109.46770 * 56.04664 * 14 13 2 37 37 H 1.09003 * 109.46848 * 176.04346 * 14 13 2 38 38 H 1.09002 * 109.47043 * 309.99859 * 15 13 2 39 39 H 1.09001 * 109.47354 * 69.99921 * 15 13 2 40 40 H 1.08990 * 110.32664 * 237.79505 * 18 16 15 41 41 H 1.09011 * 110.31951 * 0.02562 * 18 16 15 42 42 H 1.09000 * 110.40726 * 142.63922 * 19 18 16 43 43 H 1.09003 * 110.41258 * 265.07722 * 19 18 16 44 44 H 1.09004 * 109.46995 * 50.12485 * 21 20 19 45 45 H 1.08998 * 109.47416 * 170.12384 * 21 20 19 46 46 H 1.08004 * 120.00287 * 0.02562 * 23 22 21 47 47 H 1.07998 * 119.99719 * 180.22831 * 24 23 22 48 48 H 1.08005 * 120.00050 * 179.72339 * 25 24 23 49 49 H 1.07993 * 120.00127 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.00358 * 359.97438 * 27 22 21 51 51 H 1.08995 * 110.41056 * 280.70464 * 28 20 19 52 52 H 1.08994 * 110.40775 * 158.25959 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2306 -1.1934 -2.3578 8 7 3.5766 -1.8384 -3.2990 9 14 6.0921 -1.0610 -2.4368 10 1 6.7010 -2.2130 -1.7245 11 1 6.5292 -1.0694 -3.8560 12 1 6.5261 0.2048 -1.7928 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0762 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.3788 -0.5663 3.6185 17 1 2.1670 -1.6332 3.6911 18 6 3.8983 -0.3290 3.4971 19 6 4.2724 0.5157 4.7340 20 7 3.2080 0.2179 5.7266 21 6 3.1237 1.2763 6.7417 22 6 4.3453 1.2257 7.6228 23 6 4.3391 0.4531 8.7690 24 6 5.4613 0.4028 9.5747 25 6 6.5859 1.1334 9.2396 26 6 6.5903 1.9102 8.0962 27 6 5.4699 1.9563 7.2877 28 6 1.9628 0.1548 4.9186 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 4.0610 -2.2451 -4.0345 35 1 0.4420 -2.0732 1.3346 36 1 1.8168 -2.5950 0.3316 37 1 1.9618 -2.5869 2.1057 38 1 1.9297 1.0869 2.3125 39 1 0.5722 -0.0346 2.5726 40 1 4.4323 -1.2790 3.5118 41 1 4.1238 0.2193 2.5823 42 1 5.2466 0.2146 5.1193 43 1 4.2729 1.5766 4.4838 44 1 3.0703 2.2478 6.2502 45 1 2.2311 1.1270 7.3492 46 1 3.4590 -0.1145 9.0330 47 1 5.4578 -0.2037 10.4683 48 1 7.4612 1.0976 9.8714 49 1 7.4688 2.4813 7.8347 50 1 5.4733 2.5632 6.3944 51 1 1.6019 1.1592 4.6974 52 1 1.1981 -0.4180 5.4430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276361001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:44 Heat of formation + Delta-G solvation = 13.614858 kcal Electronic energy + Delta-G solvation = -26655.179386 eV Core-core repulsion = 23232.401807 eV Total energy + Delta-G solvation = -3422.777579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75094 -39.84459 -38.70466 -35.27839 -34.34487 -32.48109 -31.75100 -30.85756 -30.08302 -29.26174 -27.67998 -26.36668 -25.36759 -24.01280 -23.41819 -22.56875 -21.66636 -20.66696 -20.13949 -18.34142 -17.60896 -17.31410 -16.88436 -16.65736 -16.39964 -16.07778 -16.01400 -15.39784 -15.07385 -14.84950 -14.57175 -14.34762 -14.20026 -14.04603 -13.81182 -13.67569 -13.43075 -13.23795 -13.03183 -12.96401 -12.80509 -12.70268 -12.60276 -12.38890 -12.31499 -12.22843 -11.97942 -11.83607 -11.78110 -11.62676 -11.50080 -11.25505 -11.07501 -10.92206 -10.45916 -9.78042 -9.71427 -9.36851 -8.84774 -8.08768 -6.12959 0.46028 0.54836 1.41858 1.42937 1.53204 2.48008 2.78491 3.12474 3.26515 3.32083 3.72738 3.87684 3.93200 4.00725 4.05130 4.19628 4.23789 4.30623 4.34922 4.40277 4.42790 4.46695 4.54848 4.57322 4.61395 4.64520 4.71984 4.75653 4.78746 4.80775 4.81188 4.86301 4.99936 5.06815 5.14153 5.16086 5.19196 5.22243 5.23906 5.31659 5.39545 5.42508 5.52668 5.60427 5.66154 5.72269 5.74121 5.91823 5.92404 6.06078 6.17366 6.35346 6.48607 6.58093 7.01222 7.52765 9.03275 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002823 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.819593 B = 9915.572419 C =11296.506800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.495 4.495 6 H 0.058 0.942 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.530 5.530 14 C 0.032 3.968 15 C 0.068 3.932 16 C -0.079 4.079 17 H 0.075 0.925 18 C -0.108 4.108 19 C 0.043 3.957 20 N -0.512 5.512 21 C 0.084 3.916 22 C -0.087 4.087 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.132 4.132 27 C -0.126 4.126 28 C 0.045 3.955 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.000 1.000 33 H -0.011 1.011 34 H 0.258 0.742 35 H 0.030 0.970 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.130 0.870 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.134 0.866 50 H 0.120 0.880 51 H 0.052 0.948 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 6.921 26.261 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.534 4.534 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.253 5.253 14 C -0.116 4.116 15 C -0.060 4.060 16 C -0.099 4.099 17 H 0.093 0.907 18 C -0.146 4.146 19 C -0.085 4.085 20 N -0.235 5.235 21 C -0.043 4.043 22 C -0.087 4.087 23 C -0.131 4.131 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.083 4.083 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.008 0.992 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.148 0.852 47 H 0.157 0.843 48 H 0.157 0.843 49 H 0.152 0.848 50 H 0.138 0.862 51 H 0.070 0.930 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.453 6.338 26.377 27.131 hybrid contribution 0.021 0.553 -1.208 1.329 sum -0.431 6.891 25.169 26.099 Atomic orbital electron populations 1.22383 0.97359 1.01603 1.01908 1.21603 0.91935 0.97120 0.90679 0.92050 1.19098 0.95192 0.94555 0.91501 1.21480 0.93245 1.32140 1.06518 0.92414 1.25828 1.02658 0.95780 0.95816 1.70093 1.36973 1.38120 1.13111 0.85618 0.80955 0.78653 0.76805 1.20447 1.21315 1.19054 1.61955 1.59855 1.02145 1.01372 1.22298 0.97238 0.90429 1.01665 1.22154 0.97285 0.97388 0.89204 1.21812 0.94864 1.00223 0.92963 0.90709 1.22151 0.95765 0.99711 0.96963 1.23052 0.96008 0.97848 0.91625 1.65429 1.04058 1.42637 1.11419 1.21217 0.96387 0.93194 0.93523 1.19841 0.95560 0.97531 0.95808 1.21232 0.99243 0.98154 0.94437 1.21446 0.93289 0.99623 1.00373 1.21456 0.99024 0.96957 0.97381 1.21392 0.98531 0.99727 0.95315 1.21233 0.93517 0.99918 0.99827 1.23099 0.92713 0.99805 0.92666 0.93049 0.91447 0.92712 0.98189 0.99245 0.93354 0.95126 0.93615 0.91108 0.91681 0.94122 0.92708 0.92033 0.91083 0.93783 0.93531 0.88775 0.85185 0.84295 0.84335 0.84794 0.86239 0.92961 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.71 8.50 71.98 0.61 -5.09 16 2 C 0.09 3.81 2.29 44.92 0.10 3.91 16 3 H 0.06 2.52 8.03 -2.39 -0.02 2.50 16 4 C 0.03 1.75 4.27 29.85 0.13 1.87 16 5 C -0.50 -28.09 8.84 25.60 0.23 -27.87 16 6 H 0.06 3.24 7.74 -2.92 -0.02 3.22 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.95 45.82 29.54 68.60 2.03 47.84 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.53 -19.18 4.19 -897.03 -3.76 -22.94 16 14 C 0.03 1.11 8.53 127.69 1.09 2.20 16 15 C 0.07 1.88 3.48 86.30 0.30 2.18 16 16 C -0.08 -1.98 2.98 -9.90 -0.03 -2.01 16 17 H 0.07 1.96 6.42 -2.38 -0.02 1.94 16 18 C -0.11 -3.02 6.47 31.49 0.20 -2.81 16 19 C 0.04 1.01 5.47 86.45 0.47 1.48 16 20 N -0.51 -10.93 5.36 -886.05 -4.75 -15.68 16 21 C 0.08 1.51 4.97 85.56 0.42 1.93 16 22 C -0.09 -1.65 5.10 -19.87 -0.10 -1.75 16 23 C -0.11 -1.97 9.70 22.27 0.22 -1.75 16 24 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 25 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 26 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 27 C -0.13 -2.37 8.73 22.27 0.19 -2.18 16 28 C 0.05 0.91 6.03 86.45 0.52 1.43 16 29 H 0.05 1.70 6.48 -2.39 -0.02 1.68 16 30 H 0.07 1.84 6.75 -2.39 -0.02 1.83 16 31 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.00 -0.01 6.10 -2.38 -0.01 -0.02 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.03 0.95 6.51 -2.39 -0.02 0.94 16 36 H 0.05 1.93 6.03 -2.38 -0.01 1.92 16 37 H 0.07 2.21 6.40 -2.39 -0.02 2.20 16 38 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 39 H 0.04 1.02 6.94 -2.39 -0.02 1.01 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 2.01 7.64 -2.38 -0.02 1.99 16 42 H 0.07 1.76 7.81 -2.39 -0.02 1.74 16 43 H 0.04 1.01 7.82 -2.39 -0.02 0.99 16 44 H 0.05 0.81 7.82 -2.39 -0.02 0.79 16 45 H 0.09 1.43 8.07 -2.39 -0.02 1.41 16 46 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 48 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 50 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 51 H 0.05 0.98 7.72 -2.39 -0.02 0.96 16 52 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -65.06 398.09 0.16 -64.91 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.86 Total: 17.48 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 5.49 Total: -33.89 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -8.22 Total: -96.34 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -65.06 0.16 -64.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276361001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.521 kcal (2) G-P(sol) polarization free energy of solvation -65.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds