Wall clock time and date at job start Tue Mar 31 2020 11:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50696 * 109.47344 * 184.99683 * 4 2 1 6 6 H 1.08002 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99982 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99909 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47225 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47325 * 119.99854 * 9 7 5 12 12 H 1.48501 * 109.47446 * 240.00057 * 9 7 5 13 13 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 14 14 C 1.46896 * 111.00419 * 306.04712 * 13 2 1 15 15 C 1.46898 * 110.99960 * 70.00462 * 13 2 1 16 16 C 1.53000 * 109.47246 * 169.99459 * 15 13 2 17 17 H 1.09007 * 110.64142 * 56.69972 * 16 15 13 18 18 C 1.54591 * 110.72508 * 293.54677 * 16 15 13 19 19 C 1.53995 * 105.13781 * 219.67906 * 18 16 15 20 20 N 1.47903 * 107.05760 * 358.77819 * 19 18 16 21 21 C 1.46909 * 110.99867 * 145.84025 * 20 19 18 22 22 C 1.50702 * 109.46979 * 69.87298 * 21 20 19 23 23 C 1.38236 * 120.00105 * 269.72483 * 22 21 20 24 24 C 1.38233 * 120.00152 * 179.76449 * 23 22 21 25 25 C 1.38236 * 119.99654 * 0.48963 * 24 23 22 26 26 C 1.38237 * 120.00134 * 359.78928 * 25 24 23 27 27 C 1.38230 * 120.00197 * 359.95202 * 26 25 24 28 28 C 1.48529 * 105.82322 * 25.32952 * 20 19 18 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 33 33 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 34 34 H 0.97003 * 119.99535 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46919 * 60.00027 * 14 13 2 36 36 H 1.08996 * 109.47115 * 180.02562 * 14 13 2 37 37 H 1.09004 * 109.47181 * 300.00189 * 14 13 2 38 38 H 1.09002 * 109.47254 * 290.00034 * 15 13 2 39 39 H 1.08998 * 109.47220 * 49.99915 * 15 13 2 40 40 H 1.08994 * 110.30892 * 338.60178 * 18 16 15 41 41 H 1.09002 * 110.30791 * 100.76934 * 18 16 15 42 42 H 1.09002 * 109.91283 * 118.12693 * 19 18 16 43 43 H 1.08993 * 109.92032 * 239.22348 * 19 18 16 44 44 H 1.08995 * 109.46792 * 189.87324 * 21 20 19 45 45 H 1.09001 * 109.47258 * 309.87221 * 21 20 19 46 46 H 1.08005 * 119.99793 * 0.02562 * 23 22 21 47 47 H 1.07997 * 120.00095 * 180.25119 * 24 23 22 48 48 H 1.08000 * 120.00223 * 179.76664 * 25 24 23 49 49 H 1.08003 * 119.99791 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.00577 * 180.02562 * 27 26 25 51 51 H 1.09000 * 110.66902 * 202.35996 * 28 20 19 52 52 H 1.08995 * 110.66879 * 79.22652 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8371 3.3000 9 14 6.0919 -1.0605 2.4373 10 1 6.5836 -0.2901 1.2667 11 1 6.4860 -0.3642 3.6883 12 1 6.6861 -2.4213 2.4199 13 7 2.0196 -0.6926 -1.1994 14 6 1.4342 -2.0355 -1.3078 15 6 1.7529 0.0971 -2.4090 16 6 2.4885 -0.5257 -3.5973 17 1 2.1955 -1.5676 -3.7272 18 6 4.0191 -0.4062 -3.4168 19 6 4.5641 -0.0692 -4.8172 20 7 3.4059 -0.0333 -5.7363 21 6 3.5946 0.9815 -6.7816 22 6 4.6821 0.5351 -7.7246 23 6 5.9967 0.8851 -7.4788 24 6 6.9948 0.4715 -8.3411 25 6 6.6771 -0.2835 -9.4547 26 6 5.3619 -0.6286 -9.7035 27 6 4.3644 -0.2196 -8.8384 28 6 2.2275 0.2866 -4.8906 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 4.0607 -2.2439 4.0354 35 1 0.3490 -1.9549 -1.3693 36 1 1.8139 -2.5261 -2.2040 37 1 1.7058 -2.6222 -0.4302 38 1 0.6814 0.1053 -2.6087 39 1 2.1025 1.1188 -2.2604 40 1 4.2561 0.3942 -2.7159 41 1 4.4338 -1.3516 -3.0670 42 1 5.0550 0.9038 -4.8003 43 1 5.2705 -0.8359 -5.1351 44 1 2.6644 1.1106 -7.3348 45 1 3.8784 1.9283 -6.3219 46 1 6.2444 1.4781 -6.6108 47 1 8.0223 0.7414 -8.1469 48 1 7.4565 -0.6035 -10.1304 49 1 5.1137 -1.2181 -10.5738 50 1 3.3369 -0.4895 -9.0325 51 1 1.3071 -0.0429 -5.3727 52 1 2.1883 1.3539 -4.6732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276361006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:46 Heat of formation + Delta-G solvation = 13.199715 kcal Electronic energy + Delta-G solvation = -26618.949106 eV Core-core repulsion = 23196.153525 eV Total energy + Delta-G solvation = -3422.795581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73889 -39.82101 -38.71731 -35.27942 -34.35171 -32.50432 -31.75370 -30.86201 -30.12948 -29.19280 -27.72567 -26.37720 -25.35539 -24.02138 -23.42044 -22.50074 -21.64965 -20.71939 -20.18650 -18.34451 -17.57315 -17.37397 -16.83392 -16.68890 -16.40713 -16.10601 -15.94590 -15.41904 -15.04136 -14.75107 -14.59304 -14.33777 -14.23472 -14.05506 -13.90580 -13.69188 -13.45760 -13.29232 -13.10161 -12.98183 -12.80166 -12.65359 -12.50800 -12.34307 -12.31553 -12.28790 -11.97358 -11.85010 -11.74805 -11.58795 -11.57511 -11.30259 -11.05890 -10.92989 -10.47162 -9.77698 -9.69713 -9.33175 -8.82880 -8.08833 -6.12821 0.46059 0.54874 1.40434 1.41877 1.54419 2.47796 2.78136 3.12405 3.25623 3.29925 3.72980 3.88047 3.92395 4.00811 4.04163 4.18833 4.22423 4.29441 4.34173 4.40302 4.42316 4.45971 4.55736 4.56763 4.61982 4.64827 4.71592 4.74830 4.78968 4.81539 4.83075 4.86684 4.99476 5.07764 5.11595 5.15551 5.19569 5.21597 5.25535 5.32179 5.36634 5.43150 5.52218 5.60259 5.66084 5.72470 5.74000 5.92190 5.94558 6.07188 6.17435 6.35577 6.49915 6.58242 7.01547 7.52783 9.03497 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002818 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.935480 B = 9932.648901 C =11353.209098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.062 0.938 4 C 0.035 3.965 5 C -0.493 4.493 6 H 0.057 0.943 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.031 3.969 15 C 0.069 3.931 16 C -0.077 4.077 17 H 0.077 0.923 18 C -0.111 4.111 19 C 0.046 3.954 20 N -0.517 5.517 21 C 0.086 3.914 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.112 4.112 28 C 0.048 3.952 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.066 0.934 32 H -0.011 1.011 33 H -0.003 1.003 34 H 0.257 0.743 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.046 0.954 46 H 0.119 0.881 47 H 0.134 0.866 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.131 0.869 51 H 0.094 0.906 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 5.678 -26.632 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.002 4.002 5 C -0.531 4.531 6 H 0.076 0.924 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.780 3.220 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.255 5.255 14 C -0.117 4.117 15 C -0.059 4.059 16 C -0.097 4.097 17 H 0.095 0.905 18 C -0.150 4.150 19 C -0.082 4.082 20 N -0.241 5.241 21 C -0.041 4.041 22 C -0.088 4.088 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.130 4.130 28 C -0.080 4.080 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.008 0.992 33 H 0.015 0.985 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.137 0.863 47 H 0.152 0.848 48 H 0.157 0.843 49 H 0.157 0.843 50 H 0.149 0.851 51 H 0.113 0.887 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.042 5.062 -26.711 27.186 hybrid contribution 0.338 0.593 1.202 1.382 sum 0.381 5.655 -25.509 26.131 Atomic orbital electron populations 1.22382 0.97304 1.01688 1.01891 1.21608 0.91989 0.97020 0.90711 0.92021 1.19055 0.95182 0.94421 0.91512 1.21503 0.93265 1.31967 1.06380 0.92438 1.25836 1.02681 0.95829 0.95862 1.70102 1.36900 1.38249 1.13130 0.85564 0.80962 0.77607 0.77890 1.18897 1.20894 1.21055 1.61948 1.59161 1.02700 1.01647 1.22308 0.96841 0.91067 1.01464 1.22082 0.97856 0.96775 0.89220 1.21982 0.94680 0.99919 0.93075 0.90472 1.22218 0.95752 1.01479 0.95504 1.22794 0.93621 1.00203 0.91537 1.64777 1.03132 1.45121 1.11101 1.21225 0.97844 0.92462 0.92565 1.19856 0.94302 0.98651 0.95944 1.21239 0.92866 1.00775 0.99673 1.21388 0.99819 0.98603 0.95165 1.21457 0.97160 0.98365 0.97839 1.21449 0.93059 1.00128 1.00088 1.21230 1.00280 0.97248 0.94259 1.23206 0.94378 0.98282 0.92100 0.92877 0.92701 0.91483 0.99241 0.98516 0.93375 0.94831 0.90992 0.93906 0.93989 0.91630 0.92464 0.92749 0.93653 0.91574 0.88709 0.93610 0.86302 0.84823 0.84328 0.84265 0.85141 0.88749 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 8.44 71.98 0.61 -5.09 16 2 C 0.10 3.81 2.26 44.92 0.10 3.91 16 3 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 4 C 0.04 1.85 4.36 29.85 0.13 1.98 16 5 C -0.49 -28.02 8.84 25.60 0.23 -27.79 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 8 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 9 Si 0.95 45.92 29.54 68.60 2.03 47.94 16 10 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 N -0.53 -19.25 4.24 -897.05 -3.80 -23.05 16 14 C 0.03 1.08 8.60 127.69 1.10 2.17 16 15 C 0.07 1.91 3.86 86.30 0.33 2.25 16 16 C -0.08 -1.94 2.95 -9.59 -0.03 -1.97 16 17 H 0.08 2.04 6.41 -2.38 -0.02 2.02 16 18 C -0.11 -3.14 6.33 31.47 0.20 -2.94 16 19 C 0.05 1.11 5.63 86.45 0.49 1.60 16 20 N -0.52 -11.08 5.26 -887.56 -4.66 -15.74 16 21 C 0.09 1.55 4.92 85.56 0.42 1.97 16 22 C -0.09 -1.66 5.10 -19.86 -0.10 -1.76 16 23 C -0.13 -2.40 8.95 22.27 0.20 -2.20 16 24 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 26 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 27 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 28 C 0.05 0.97 5.98 86.65 0.52 1.48 16 29 H 0.05 1.75 6.32 -2.39 -0.02 1.73 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.83 6.91 -2.39 -0.02 1.81 16 32 H -0.01 -0.61 8.14 -2.38 -0.02 -0.62 16 33 H 0.00 -0.19 6.34 -2.39 -0.02 -0.21 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.03 1.03 6.21 -2.39 -0.01 1.01 16 36 H 0.07 2.21 6.26 -2.39 -0.01 2.19 16 37 H 0.04 1.77 6.37 -2.39 -0.02 1.75 16 38 H 0.04 1.05 7.06 -2.39 -0.02 1.03 16 39 H 0.07 1.85 7.86 -2.39 -0.02 1.83 16 40 H 0.06 1.79 7.80 -2.39 -0.02 1.77 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.03 6.94 -2.39 -0.02 1.01 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 45 H 0.05 0.81 7.76 -2.39 -0.02 0.79 16 46 H 0.12 2.12 7.50 -2.91 -0.02 2.10 16 47 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 50 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 51 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.05 0.99 7.93 -2.39 -0.02 0.97 16 Total: -1.00 -65.61 397.81 0.25 -65.36 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.86 Total: 17.11 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 5.54 Total: -33.65 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -8.18 Total: -96.77 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -65.61 0.25 -65.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276361006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.562 kcal (2) G-P(sol) polarization free energy of solvation -65.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds