Wall clock time and date at job start Tue Mar 31 2020 10:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.50327 * 2 1 4 4 C 1.53029 * 109.50209 * 239.91645 * 2 1 3 5 5 N 1.46921 * 109.48415 * 299.19938 * 4 2 1 6 6 C 1.46899 * 110.99105 * 174.18121 * 5 4 2 7 7 C 1.50695 * 109.47218 * 58.18228 * 6 5 4 8 8 C 1.38230 * 120.00080 * 269.72930 * 7 6 5 9 9 C 1.38244 * 120.00018 * 179.74247 * 8 7 6 10 10 C 1.38241 * 119.99706 * 0.55158 * 9 8 7 11 11 C 1.38234 * 119.99989 * 359.70063 * 10 9 8 12 12 C 1.38237 * 119.99693 * 90.00209 * 7 6 5 13 13 C 1.46850 * 111.22325 * 298.28625 * 5 4 2 14 14 C 1.53033 * 109.52096 * 61.73733 * 13 5 4 15 15 C 1.53117 * 109.50211 * 120.07515 * 2 1 3 16 16 H 1.09000 * 109.52729 * 182.19107 * 15 2 1 17 17 N 1.46905 * 109.52281 * 302.32141 * 15 2 1 18 18 C 1.46908 * 110.99635 * 204.99859 * 17 15 2 19 19 C 1.53001 * 109.46851 * 179.97438 * 18 17 15 20 20 C 1.50695 * 109.46950 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00315 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00070 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00038 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47062 * 90.00271 * 24 22 20 26 26 H 1.48502 * 109.47110 * 210.00021 * 24 22 20 27 27 H 1.48493 * 109.47231 * 330.00346 * 24 22 20 28 28 H 1.09001 * 109.47002 * 60.00064 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00330 * 1 2 3 31 31 H 1.08998 * 109.47870 * 59.99668 * 3 2 1 32 32 H 1.09002 * 109.47142 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46823 * 299.99603 * 3 2 1 34 34 H 1.08998 * 109.46341 * 59.25924 * 4 2 1 35 35 H 1.09003 * 109.46148 * 179.22285 * 4 2 1 36 36 H 1.09003 * 109.47163 * 178.18470 * 6 5 4 37 37 H 1.08998 * 109.46887 * 298.18426 * 6 5 4 38 38 H 1.07998 * 119.99976 * 359.97438 * 8 7 6 39 39 H 1.07994 * 120.00216 * 180.27344 * 9 8 7 40 40 H 1.07998 * 119.99874 * 179.72754 * 10 9 8 41 41 H 1.07999 * 119.99842 * 180.02562 * 11 10 9 42 42 H 1.07994 * 120.00135 * 0.02562 * 12 7 6 43 43 H 1.09003 * 109.45852 * 301.72836 * 13 5 4 44 44 H 1.08998 * 109.45985 * 181.74971 * 13 5 4 45 45 H 1.09003 * 109.50529 * 180.88196 * 14 13 5 46 46 H 1.09008 * 109.50816 * 60.76643 * 14 13 5 47 47 H 1.00893 * 110.99766 * 328.94731 * 17 15 2 48 48 H 1.08997 * 109.47022 * 299.99658 * 18 17 15 49 49 H 1.09002 * 109.46749 * 60.00276 * 18 17 15 50 50 H 1.09003 * 109.46857 * 299.99916 * 19 18 17 51 51 H 1.08996 * 109.47305 * 60.00043 * 19 18 17 52 52 H 0.96999 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0409 -0.7231 -1.2482 5 7 1.5676 -2.1139 -1.2370 6 6 1.9223 -2.8005 -2.4863 7 6 3.4171 -2.7621 -2.6736 8 6 4.0008 -1.7144 -3.3609 9 6 5.3726 -1.6764 -3.5282 10 6 6.1594 -2.6921 -3.0180 11 6 5.5752 -3.7424 -2.3352 12 6 4.2040 -3.7775 -2.1630 13 6 2.0846 -2.8420 -0.0713 14 6 1.5749 -2.1813 1.2116 15 6 2.0412 -0.7233 1.2490 16 1 3.1305 -0.6897 1.2693 17 7 1.5073 -0.0665 2.4497 18 6 2.3782 -0.3011 3.6093 19 6 1.7910 0.3972 4.8376 20 6 2.6847 0.1570 6.0270 21 1 3.5814 -0.4348 5.9179 22 6 2.3568 0.6921 7.2547 23 7 3.1364 0.4821 8.2928 24 14 0.8053 1.7151 7.4435 25 1 -0.3308 0.8294 7.8041 26 1 1.0052 2.7245 8.5142 27 1 0.5081 2.4047 6.1624 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6778 1.9563 0.8899 32 1 3.1309 1.4416 0.0005 33 1 1.6778 1.9562 -0.8900 34 1 1.6670 -0.2183 -2.1389 35 1 3.1309 -0.7106 -1.2545 36 1 1.5887 -3.8371 -2.4385 37 1 1.4380 -2.3012 -3.3254 38 1 3.3856 -0.9236 -3.7640 39 1 5.8290 -0.8556 -4.0613 40 1 7.2307 -2.6646 -3.1524 41 1 6.1900 -4.5357 -1.9362 42 1 3.7475 -4.5985 -1.6302 43 1 3.1743 -2.8196 -0.0831 44 1 1.7421 -3.8762 -0.1079 45 1 1.9715 -2.7125 2.0769 46 1 0.4856 -2.2156 1.2307 47 1 1.3731 0.9210 2.2922 48 1 2.4496 -1.3720 3.7993 49 1 3.3713 0.0987 3.4046 50 1 1.7199 1.4681 4.6473 51 1 0.7978 -0.0022 5.0424 52 1 2.9060 0.8588 9.1565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282594523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:42 Heat of formation + Delta-G solvation = 17.319926 kcal Electronic energy + Delta-G solvation = -27367.428972 eV Core-core repulsion = 23944.812057 eV Total energy + Delta-G solvation = -3422.616915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54152 -39.09207 -36.29429 -34.34723 -32.72274 -32.20108 -31.19725 -30.63374 -28.99599 -27.11845 -26.94338 -25.68732 -24.11977 -22.88119 -22.23187 -21.66634 -20.84929 -20.32049 -18.26345 -17.01169 -16.73787 -16.09609 -15.76132 -15.46567 -15.26157 -14.88912 -14.61105 -14.54840 -14.10849 -13.71343 -13.64494 -13.43960 -13.32865 -12.88146 -12.74108 -12.62595 -12.52480 -12.36301 -11.99694 -11.84898 -11.61221 -11.52092 -11.40153 -11.26640 -11.14517 -11.09360 -10.99144 -10.65162 -10.44249 -10.08666 -10.01004 -9.74783 -9.56677 -9.19185 -9.15950 -9.02936 -8.51153 -8.41283 -7.84373 -6.02074 -4.00114 1.06017 1.13261 3.34816 3.41390 3.46483 3.47036 3.88050 4.48483 4.48623 4.52383 4.63179 4.67666 4.73961 4.82149 4.85551 4.91381 5.09728 5.22722 5.27742 5.31415 5.32828 5.38869 5.43563 5.48273 5.53743 5.65368 5.69374 5.74358 5.75413 5.77548 5.79499 5.94367 5.99808 6.04850 6.15313 6.17940 6.21645 6.25005 6.27945 6.32384 6.33232 6.37194 6.49053 6.70701 6.73143 6.83784 6.95637 6.98663 7.20487 7.43328 7.67967 7.81932 7.98451 8.56186 9.02260 9.60570 11.11364 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002899 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.359468 B = 9656.069308 C =10261.594578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 C -0.147 4.147 4 C 0.068 3.932 5 N -0.520 5.520 6 C 0.091 3.909 7 C -0.120 4.120 8 C -0.109 4.109 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.121 4.121 12 C -0.108 4.108 13 C 0.053 3.947 14 C -0.106 4.106 15 C 0.098 3.902 16 H 0.033 0.967 17 N -0.687 5.687 18 C 0.075 3.925 19 C -0.009 4.009 20 C -0.520 4.520 21 H 0.070 0.930 22 C 0.066 3.934 23 N -0.905 5.905 24 Si 0.883 3.117 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.265 1.265 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.335 0.665 48 H 0.063 0.937 49 H 0.018 0.982 50 H 0.012 0.988 51 H 0.021 0.979 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 -5.689 -27.572 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.063 4.063 3 C -0.205 4.205 4 C -0.061 4.061 5 N -0.242 5.242 6 C -0.036 4.036 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.140 4.140 11 C -0.139 4.139 12 C -0.127 4.127 13 C -0.075 4.075 14 C -0.144 4.144 15 C -0.012 4.012 16 H 0.051 0.949 17 N -0.319 5.319 18 C -0.054 4.054 19 C -0.047 4.047 20 C -0.558 4.558 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.544 5.544 24 Si 0.710 3.290 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.190 1.190 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.155 0.845 48 H 0.081 0.919 49 H 0.037 0.963 50 H 0.030 0.970 51 H 0.039 0.961 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.002 -6.149 -27.161 27.866 hybrid contribution 1.170 1.104 0.051 1.609 sum 0.168 -5.045 -27.109 27.575 Atomic orbital electron populations 1.21690 0.93074 1.02780 1.00654 1.20718 0.97434 0.94262 0.93927 1.21911 1.00768 0.95716 1.02101 1.22166 0.97609 0.88391 0.97895 1.62357 1.58261 1.02123 1.01441 1.21273 0.88810 1.00375 0.93170 1.20717 0.97942 0.95168 0.98362 1.21073 0.94935 0.97957 0.98782 1.21159 0.93943 0.98720 1.00167 1.21169 0.99832 0.94581 0.98378 1.21180 0.95021 0.98611 0.99054 1.21100 0.93805 0.98376 0.99420 1.22190 0.97570 0.97463 0.90317 1.21621 1.02550 0.94775 0.95468 1.21481 0.95956 0.94325 0.89430 0.94859 1.60674 1.50619 1.17108 1.03503 1.21974 0.92834 1.00631 0.89921 1.19533 0.96992 0.95206 0.92940 1.21082 1.09324 1.33159 0.92275 0.91212 1.25013 0.96720 0.95975 0.95767 1.69918 1.38094 1.45799 1.00596 0.86727 0.83841 0.80469 0.77920 1.20239 1.21571 1.18982 0.94033 0.91276 0.92220 0.91899 0.93004 0.92462 0.91060 0.94438 0.89882 0.89939 0.86272 0.86198 0.86227 0.86113 0.86170 0.94604 0.90920 0.91493 0.90136 0.84536 0.91901 0.96342 0.97022 0.96100 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 7.84 37.16 0.29 -1.19 16 2 C -0.06 -0.74 0.53 -154.43 -0.08 -0.82 16 3 C -0.15 -1.65 8.28 37.16 0.31 -1.35 16 4 C 0.07 0.71 3.28 -3.80 -0.01 0.70 16 5 N -0.52 -5.28 4.14 -236.06 -0.98 -6.26 16 6 C 0.09 0.77 5.56 -4.98 -0.03 0.75 16 7 C -0.12 -1.09 4.03 -104.63 -0.42 -1.51 16 8 C -0.11 -0.96 8.03 -39.58 -0.32 -1.28 16 9 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 10 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 11 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 12 C -0.11 -0.99 8.12 -39.58 -0.32 -1.31 16 13 C 0.05 0.59 4.83 -3.83 -0.02 0.57 16 14 C -0.11 -1.42 5.24 -26.65 -0.14 -1.56 16 15 C 0.10 1.40 1.70 -67.59 -0.12 1.29 16 16 H 0.03 0.53 7.80 -51.93 -0.41 0.12 16 17 N -0.69 -11.60 5.56 -106.58 -0.59 -12.20 16 18 C 0.07 1.54 5.43 -3.82 -0.02 1.52 16 19 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 20 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 21 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 24 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.87 6.01 -51.93 -0.31 0.56 16 30 H 0.06 0.78 7.35 -51.93 -0.38 0.40 16 31 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.04 0.44 6.48 -51.93 -0.34 0.10 16 36 H 0.08 0.64 8.01 -51.93 -0.42 0.23 16 37 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.12 0.90 8.03 -52.49 -0.42 0.48 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.98 8.03 -52.49 -0.42 0.55 16 43 H 0.04 0.43 6.55 -51.93 -0.34 0.09 16 44 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.07 0.98 7.55 -51.93 -0.39 0.58 16 46 H 0.08 1.13 6.58 -51.92 -0.34 0.79 16 47 H 0.33 5.47 6.03 -39.30 -0.24 5.23 16 48 H 0.06 1.33 7.51 -51.93 -0.39 0.94 16 49 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 50 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 51 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 52 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -30.93 388.56 -11.52 -42.45 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -9.29 Total: 2.65 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.62 Total: -22.49 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.80 Total: -46.00 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.93 -11.52 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282594523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.774 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds