Wall clock time and date at job start Tue Mar 31 2020 10:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.50327 * 2 1 4 4 C 1.53029 * 109.50209 * 239.91645 * 2 1 3 5 5 N 1.46921 * 109.48415 * 299.19938 * 4 2 1 6 6 C 1.46899 * 110.99105 * 174.18121 * 5 4 2 7 7 C 1.50695 * 109.47218 * 58.18228 * 6 5 4 8 8 C 1.38230 * 120.00080 * 269.72930 * 7 6 5 9 9 C 1.38244 * 120.00018 * 179.74247 * 8 7 6 10 10 C 1.38241 * 119.99706 * 0.55158 * 9 8 7 11 11 C 1.38234 * 119.99989 * 359.70063 * 10 9 8 12 12 C 1.38237 * 119.99693 * 90.00209 * 7 6 5 13 13 C 1.46850 * 111.22325 * 298.28625 * 5 4 2 14 14 C 1.53033 * 109.52096 * 61.73733 * 13 5 4 15 15 C 1.53117 * 109.50211 * 120.07515 * 2 1 3 16 16 H 1.09000 * 109.52729 * 182.19107 * 15 2 1 17 17 N 1.46905 * 109.52281 * 302.32141 * 15 2 1 18 18 C 1.46908 * 110.99635 * 204.99859 * 17 15 2 19 19 C 1.53001 * 109.46851 * 179.97438 * 18 17 15 20 20 C 1.50695 * 109.46950 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00315 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99838 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00070 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00038 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47062 * 90.00271 * 24 22 20 26 26 H 1.48502 * 109.47110 * 210.00021 * 24 22 20 27 27 H 1.48493 * 109.47231 * 330.00346 * 24 22 20 28 28 H 1.09001 * 109.47002 * 60.00064 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00330 * 1 2 3 31 31 H 1.08998 * 109.47870 * 59.99668 * 3 2 1 32 32 H 1.09002 * 109.47142 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46823 * 299.99603 * 3 2 1 34 34 H 1.08998 * 109.46341 * 59.25924 * 4 2 1 35 35 H 1.09003 * 109.46148 * 179.22285 * 4 2 1 36 36 H 1.09003 * 109.47163 * 178.18470 * 6 5 4 37 37 H 1.08998 * 109.46887 * 298.18426 * 6 5 4 38 38 H 1.07998 * 119.99976 * 359.97438 * 8 7 6 39 39 H 1.07994 * 120.00216 * 180.27344 * 9 8 7 40 40 H 1.07998 * 119.99874 * 179.72754 * 10 9 8 41 41 H 1.07999 * 119.99842 * 180.02562 * 11 10 9 42 42 H 1.07994 * 120.00135 * 0.02562 * 12 7 6 43 43 H 1.09003 * 109.45852 * 301.72836 * 13 5 4 44 44 H 1.08998 * 109.45985 * 181.74971 * 13 5 4 45 45 H 1.09003 * 109.50529 * 180.88196 * 14 13 5 46 46 H 1.09008 * 109.50816 * 60.76643 * 14 13 5 47 47 H 1.00893 * 110.99766 * 328.94731 * 17 15 2 48 48 H 1.08997 * 109.47022 * 299.99658 * 18 17 15 49 49 H 1.09002 * 109.46749 * 60.00276 * 18 17 15 50 50 H 1.09003 * 109.46857 * 299.99916 * 19 18 17 51 51 H 1.08996 * 109.47305 * 60.00043 * 19 18 17 52 52 H 0.96999 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0409 -0.7231 -1.2482 5 7 1.5676 -2.1139 -1.2370 6 6 1.9223 -2.8005 -2.4863 7 6 3.4171 -2.7621 -2.6736 8 6 4.0008 -1.7144 -3.3609 9 6 5.3726 -1.6764 -3.5282 10 6 6.1594 -2.6921 -3.0180 11 6 5.5752 -3.7424 -2.3352 12 6 4.2040 -3.7775 -2.1630 13 6 2.0846 -2.8420 -0.0713 14 6 1.5749 -2.1813 1.2116 15 6 2.0412 -0.7233 1.2490 16 1 3.1305 -0.6897 1.2693 17 7 1.5073 -0.0665 2.4497 18 6 2.3782 -0.3011 3.6093 19 6 1.7910 0.3972 4.8376 20 6 2.6847 0.1570 6.0270 21 1 3.5814 -0.4348 5.9179 22 6 2.3568 0.6921 7.2547 23 7 3.1364 0.4821 8.2928 24 14 0.8053 1.7151 7.4435 25 1 -0.3308 0.8294 7.8041 26 1 1.0052 2.7245 8.5142 27 1 0.5081 2.4047 6.1624 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6778 1.9563 0.8899 32 1 3.1309 1.4416 0.0005 33 1 1.6778 1.9562 -0.8900 34 1 1.6670 -0.2183 -2.1389 35 1 3.1309 -0.7106 -1.2545 36 1 1.5887 -3.8371 -2.4385 37 1 1.4380 -2.3012 -3.3254 38 1 3.3856 -0.9236 -3.7640 39 1 5.8290 -0.8556 -4.0613 40 1 7.2307 -2.6646 -3.1524 41 1 6.1900 -4.5357 -1.9362 42 1 3.7475 -4.5985 -1.6302 43 1 3.1743 -2.8196 -0.0831 44 1 1.7421 -3.8762 -0.1079 45 1 1.9715 -2.7125 2.0769 46 1 0.4856 -2.2156 1.2307 47 1 1.3731 0.9210 2.2922 48 1 2.4496 -1.3720 3.7993 49 1 3.3713 0.0987 3.4046 50 1 1.7199 1.4681 4.6473 51 1 0.7978 -0.0022 5.0424 52 1 2.9060 0.8588 9.1565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282594523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:40 Heat of formation + Delta-G solvation = -0.475358 kcal Electronic energy + Delta-G solvation = -27368.200634 eV Core-core repulsion = 23944.812057 eV Total energy + Delta-G solvation = -3423.388577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40280 -39.90288 -37.40863 -35.80105 -34.51470 -33.27473 -31.95578 -31.79361 -30.43075 -28.03946 -27.75816 -26.94286 -25.61069 -23.63014 -23.26589 -22.69558 -22.09855 -21.60582 -19.31307 -18.93671 -17.70227 -17.13947 -16.65843 -16.34060 -16.25000 -16.15330 -15.89051 -15.60959 -15.47268 -14.88542 -14.80378 -14.48390 -14.31956 -14.26567 -13.93770 -13.80013 -13.45181 -13.41072 -13.15352 -12.97598 -12.82830 -12.70955 -12.45784 -12.35546 -12.20182 -12.10392 -12.03050 -11.82233 -11.78699 -11.73190 -11.47336 -11.43373 -11.15521 -10.96401 -10.77998 -9.81343 -9.69859 -9.29553 -9.22904 -8.31140 -6.35969 0.40574 0.48170 1.36965 1.38156 1.51074 2.36046 2.78508 3.04407 3.09844 3.26331 3.67015 3.82799 3.88124 3.92722 4.04523 4.13299 4.23373 4.26633 4.33961 4.41815 4.44739 4.47979 4.49980 4.51436 4.60582 4.68132 4.73292 4.79454 4.80923 4.88597 4.91251 4.93487 5.01097 5.02218 5.09152 5.12548 5.13983 5.18990 5.22202 5.33395 5.39737 5.44399 5.48580 5.54196 5.60850 5.62248 5.64158 5.71900 6.10442 6.13070 6.15970 6.18607 6.25641 6.56301 6.72921 7.28958 8.85713 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002899 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.359468 B = 9656.069308 C =10261.594578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.146 4.146 4 C 0.074 3.926 5 N -0.520 5.520 6 C 0.094 3.906 7 C -0.127 4.127 8 C -0.116 4.116 9 C -0.132 4.132 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.121 4.121 13 C 0.062 3.938 14 C -0.103 4.103 15 C 0.098 3.902 16 H 0.015 0.985 17 N -0.681 5.681 18 C 0.090 3.910 19 C -0.001 4.001 20 C -0.535 4.535 21 H 0.028 0.972 22 C 0.005 3.995 23 N -0.951 5.951 24 Si 0.956 3.044 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.246 1.246 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.027 0.973 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.025 0.975 44 H 0.086 0.914 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.340 0.660 48 H 0.051 0.949 49 H 0.007 0.993 50 H 0.018 0.982 51 H 0.022 0.978 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -4.726 -29.927 30.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.204 4.204 4 C -0.054 4.054 5 N -0.241 5.241 6 C -0.033 4.033 7 C -0.129 4.129 8 C -0.135 4.135 9 C -0.150 4.150 10 C -0.151 4.151 11 C -0.153 4.153 12 C -0.140 4.140 13 C -0.066 4.066 14 C -0.141 4.141 15 C -0.011 4.011 16 H 0.033 0.967 17 N -0.314 5.314 18 C -0.039 4.039 19 C -0.039 4.039 20 C -0.573 4.573 21 H 0.047 0.953 22 C -0.192 4.192 23 N -0.592 5.592 24 Si 0.779 3.221 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.169 1.169 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.044 0.956 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.161 0.839 48 H 0.070 0.930 49 H 0.025 0.975 50 H 0.037 0.963 51 H 0.041 0.959 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.856 -5.194 -29.548 30.137 hybrid contribution 1.857 0.736 0.770 2.141 sum -0.999 -4.458 -28.778 29.138 Atomic orbital electron populations 1.21617 0.92628 1.02382 1.00889 1.20692 0.97596 0.94514 0.93040 1.21902 1.00386 0.95319 1.02754 1.22106 0.96945 0.88646 0.97714 1.62359 1.58046 1.02000 1.01736 1.21332 0.88556 1.00895 0.92531 1.20819 0.98253 0.95285 0.98546 1.21299 0.95277 0.98210 0.98680 1.21445 0.94164 0.99182 1.00196 1.21447 1.00798 0.94584 0.98262 1.21426 0.95329 0.99220 0.99348 1.21287 0.94129 0.98861 0.99728 1.22052 0.96823 0.98022 0.89733 1.21569 1.02173 0.94179 0.96216 1.21556 0.94912 0.95089 0.89586 0.96668 1.60612 1.49496 1.17778 1.03481 1.21617 0.92651 0.99341 0.90281 1.19404 0.96025 0.95873 0.92579 1.21403 1.08842 1.32609 0.94464 0.95327 1.26022 1.00609 0.97359 0.95193 1.70068 1.40444 1.47282 1.01391 0.85572 0.78972 0.78764 0.78782 1.19202 1.20890 1.16946 0.92215 0.91954 0.93521 0.92783 0.93630 0.90237 0.89134 0.95510 0.89051 0.88485 0.84929 0.84612 0.84840 0.85126 0.85647 0.95641 0.89602 0.93394 0.90438 0.83905 0.93013 0.97463 0.96330 0.95916 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 7.84 71.98 0.56 -1.95 16 2 C -0.06 -1.26 0.53 -52.13 -0.03 -1.28 16 3 C -0.15 -2.99 8.28 71.98 0.60 -2.39 16 4 C 0.07 1.39 3.28 86.31 0.28 1.67 16 5 N -0.52 -9.45 4.14 -900.75 -3.73 -13.18 16 6 C 0.09 1.36 5.56 85.56 0.48 1.84 16 7 C -0.13 -2.10 4.03 -19.87 -0.08 -2.18 16 8 C -0.12 -1.83 8.03 22.27 0.18 -1.65 16 9 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 10 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 11 C -0.14 -2.33 10.05 22.27 0.22 -2.11 16 12 C -0.12 -2.12 8.12 22.27 0.18 -1.94 16 13 C 0.06 1.32 4.83 86.32 0.42 1.74 16 14 C -0.10 -2.74 5.24 30.65 0.16 -2.58 16 15 C 0.10 2.78 1.70 44.99 0.08 2.85 16 16 H 0.02 0.49 7.80 -2.39 -0.02 0.47 16 17 N -0.68 -22.75 5.56 -491.12 -2.73 -25.48 16 18 C 0.09 3.78 5.43 86.30 0.47 4.25 16 19 C 0.00 -0.05 4.30 29.85 0.13 0.08 16 20 C -0.53 -31.92 9.66 25.60 0.25 -31.67 16 21 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 22 C 0.00 0.30 5.47 84.66 0.46 0.76 16 23 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 24 Si 0.96 45.39 27.47 68.60 1.88 47.28 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.43 6.01 -2.39 -0.01 1.41 16 30 H 0.05 1.12 7.35 -2.39 -0.02 1.10 16 31 H 0.05 1.20 6.32 -2.39 -0.02 1.19 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.03 0.58 6.48 -2.39 -0.02 0.56 16 36 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16 37 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.13 1.65 8.03 -2.91 -0.02 1.63 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.13 1.94 8.03 -2.91 -0.02 1.92 16 43 H 0.03 0.60 6.55 -2.39 -0.02 0.59 16 44 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 45 H 0.05 1.43 7.55 -2.39 -0.02 1.42 16 46 H 0.08 2.12 6.58 -2.38 -0.02 2.10 16 47 H 0.34 10.77 6.03 -89.70 -0.54 10.22 16 48 H 0.05 2.26 7.51 -2.39 -0.02 2.25 16 49 H 0.01 0.31 8.06 -2.39 -0.02 0.29 16 50 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 51 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 52 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -67.59 388.56 0.80 -66.79 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.27 Total: 23.57 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 4.80 Total: -38.39 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -6.16 Total: -99.25 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -67.59 0.80 -66.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282594523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.310 kcal (2) G-P(sol) polarization free energy of solvation -67.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds