Wall clock time and date at job start Tue Mar 31 2020 10:56:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52998 * 109.50327 * 2 1
4 4 C 1.53029 * 109.50209 * 239.91645 * 2 1 3
5 5 N 1.46921 * 109.48415 * 299.19938 * 4 2 1
6 6 C 1.46899 * 110.99105 * 174.18121 * 5 4 2
7 7 C 1.50695 * 109.47218 * 58.18228 * 6 5 4
8 8 C 1.38230 * 120.00080 * 269.72930 * 7 6 5
9 9 C 1.38244 * 120.00018 * 179.74247 * 8 7 6
10 10 C 1.38241 * 119.99706 * 0.55158 * 9 8 7
11 11 C 1.38234 * 119.99989 * 359.70063 * 10 9 8
12 12 C 1.38237 * 119.99693 * 90.00209 * 7 6 5
13 13 C 1.46850 * 111.22325 * 298.28625 * 5 4 2
14 14 C 1.53033 * 109.52096 * 61.73733 * 13 5 4
15 15 C 1.53117 * 109.50211 * 120.07515 * 2 1 3
16 16 H 1.09000 * 109.52729 * 182.19107 * 15 2 1
17 17 N 1.46905 * 109.52281 * 302.32141 * 15 2 1
18 18 C 1.46908 * 110.99635 * 204.99859 * 17 15 2
19 19 C 1.53001 * 109.46851 * 179.97438 * 18 17 15
20 20 C 1.50695 * 109.46950 * 180.02562 * 19 18 17
21 21 H 1.07998 * 120.00315 * 359.97438 * 20 19 18
22 22 C 1.37879 * 119.99838 * 180.02562 * 20 19 18
23 23 N 1.31513 * 120.00070 * 179.97438 * 22 20 19
24 24 Si 1.86800 * 120.00038 * 359.97438 * 22 20 19
25 25 H 1.48505 * 109.47062 * 90.00271 * 24 22 20
26 26 H 1.48502 * 109.47110 * 210.00021 * 24 22 20
27 27 H 1.48493 * 109.47231 * 330.00346 * 24 22 20
28 28 H 1.09001 * 109.47002 * 60.00064 * 1 2 3
29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47050 * 300.00330 * 1 2 3
31 31 H 1.08998 * 109.47870 * 59.99668 * 3 2 1
32 32 H 1.09002 * 109.47142 * 179.97438 * 3 2 1
33 33 H 1.09000 * 109.46823 * 299.99603 * 3 2 1
34 34 H 1.08998 * 109.46341 * 59.25924 * 4 2 1
35 35 H 1.09003 * 109.46148 * 179.22285 * 4 2 1
36 36 H 1.09003 * 109.47163 * 178.18470 * 6 5 4
37 37 H 1.08998 * 109.46887 * 298.18426 * 6 5 4
38 38 H 1.07998 * 119.99976 * 359.97438 * 8 7 6
39 39 H 1.07994 * 120.00216 * 180.27344 * 9 8 7
40 40 H 1.07998 * 119.99874 * 179.72754 * 10 9 8
41 41 H 1.07999 * 119.99842 * 180.02562 * 11 10 9
42 42 H 1.07994 * 120.00135 * 0.02562 * 12 7 6
43 43 H 1.09003 * 109.45852 * 301.72836 * 13 5 4
44 44 H 1.08998 * 109.45985 * 181.74971 * 13 5 4
45 45 H 1.09003 * 109.50529 * 180.88196 * 14 13 5
46 46 H 1.09008 * 109.50816 * 60.76643 * 14 13 5
47 47 H 1.00893 * 110.99766 * 328.94731 * 17 15 2
48 48 H 1.08997 * 109.47022 * 299.99658 * 18 17 15
49 49 H 1.09002 * 109.46749 * 60.00276 * 18 17 15
50 50 H 1.09003 * 109.46857 * 299.99916 * 19 18 17
51 51 H 1.08996 * 109.47305 * 60.00043 * 19 18 17
52 52 H 0.96999 * 120.00214 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0409 1.4422 0.0000
4 6 2.0409 -0.7231 -1.2482
5 7 1.5676 -2.1139 -1.2370
6 6 1.9223 -2.8005 -2.4863
7 6 3.4171 -2.7621 -2.6736
8 6 4.0008 -1.7144 -3.3609
9 6 5.3726 -1.6764 -3.5282
10 6 6.1594 -2.6921 -3.0180
11 6 5.5752 -3.7424 -2.3352
12 6 4.2040 -3.7775 -2.1630
13 6 2.0846 -2.8420 -0.0713
14 6 1.5749 -2.1813 1.2116
15 6 2.0412 -0.7233 1.2490
16 1 3.1305 -0.6897 1.2693
17 7 1.5073 -0.0665 2.4497
18 6 2.3782 -0.3011 3.6093
19 6 1.7910 0.3972 4.8376
20 6 2.6847 0.1570 6.0270
21 1 3.5814 -0.4348 5.9179
22 6 2.3568 0.6921 7.2547
23 7 3.1364 0.4821 8.2928
24 14 0.8053 1.7151 7.4435
25 1 -0.3308 0.8294 7.8041
26 1 1.0052 2.7245 8.5142
27 1 0.5081 2.4047 6.1624
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.6778 1.9563 0.8899
32 1 3.1309 1.4416 0.0005
33 1 1.6778 1.9562 -0.8900
34 1 1.6670 -0.2183 -2.1389
35 1 3.1309 -0.7106 -1.2545
36 1 1.5887 -3.8371 -2.4385
37 1 1.4380 -2.3012 -3.3254
38 1 3.3856 -0.9236 -3.7640
39 1 5.8290 -0.8556 -4.0613
40 1 7.2307 -2.6646 -3.1524
41 1 6.1900 -4.5357 -1.9362
42 1 3.7475 -4.5985 -1.6302
43 1 3.1743 -2.8196 -0.0831
44 1 1.7421 -3.8762 -0.1079
45 1 1.9715 -2.7125 2.0769
46 1 0.4856 -2.2156 1.2307
47 1 1.3731 0.9210 2.2922
48 1 2.4496 -1.3720 3.7993
49 1 3.3713 0.0987 3.4046
50 1 1.7199 1.4681 4.6473
51 1 0.7978 -0.0022 5.0424
52 1 2.9060 0.8588 9.1565
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000282594523.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:56:40
Heat of formation + Delta-G solvation = -0.475358 kcal
Electronic energy + Delta-G solvation = -27368.200634 eV
Core-core repulsion = 23944.812057 eV
Total energy + Delta-G solvation = -3423.388577 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.40280 -39.90288 -37.40863 -35.80105 -34.51470 -33.27473 -31.95578 -31.79361
-30.43075 -28.03946 -27.75816 -26.94286 -25.61069 -23.63014 -23.26589 -22.69558
-22.09855 -21.60582 -19.31307 -18.93671 -17.70227 -17.13947 -16.65843 -16.34060
-16.25000 -16.15330 -15.89051 -15.60959 -15.47268 -14.88542 -14.80378 -14.48390
-14.31956 -14.26567 -13.93770 -13.80013 -13.45181 -13.41072 -13.15352 -12.97598
-12.82830 -12.70955 -12.45784 -12.35546 -12.20182 -12.10392 -12.03050 -11.82233
-11.78699 -11.73190 -11.47336 -11.43373 -11.15521 -10.96401 -10.77998 -9.81343
-9.69859 -9.29553 -9.22904 -8.31140 -6.35969 0.40574 0.48170 1.36965
1.38156 1.51074 2.36046 2.78508 3.04407 3.09844 3.26331 3.67015
3.82799 3.88124 3.92722 4.04523 4.13299 4.23373 4.26633 4.33961
4.41815 4.44739 4.47979 4.49980 4.51436 4.60582 4.68132 4.73292
4.79454 4.80923 4.88597 4.91251 4.93487 5.01097 5.02218 5.09152
5.12548 5.13983 5.18990 5.22202 5.33395 5.39737 5.44399 5.48580
5.54196 5.60850 5.62248 5.64158 5.71900 6.10442 6.13070 6.15970
6.18607 6.25641 6.56301 6.72921 7.28958 8.85713
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.018126 B = 0.002899 C = 0.002728
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1544.359468 B = 9656.069308 C =10261.594578
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.058 4.058
3 C -0.146 4.146
4 C 0.074 3.926
5 N -0.520 5.520
6 C 0.094 3.906
7 C -0.127 4.127
8 C -0.116 4.116
9 C -0.132 4.132
10 C -0.133 4.133
11 C -0.135 4.135
12 C -0.121 4.121
13 C 0.062 3.938
14 C -0.103 4.103
15 C 0.098 3.902
16 H 0.015 0.985
17 N -0.681 5.681
18 C 0.090 3.910
19 C -0.001 4.001
20 C -0.535 4.535
21 H 0.028 0.972
22 C 0.005 3.995
23 N -0.951 5.951
24 Si 0.956 3.044
25 H -0.267 1.267
26 H -0.283 1.283
27 H -0.246 1.246
28 H 0.059 0.941
29 H 0.061 0.939
30 H 0.046 0.954
31 H 0.053 0.947
32 H 0.045 0.955
33 H 0.079 0.921
34 H 0.090 0.910
35 H 0.027 0.973
36 H 0.091 0.909
37 H 0.097 0.903
38 H 0.133 0.867
39 H 0.136 0.864
40 H 0.134 0.866
41 H 0.131 0.869
42 H 0.126 0.874
43 H 0.025 0.975
44 H 0.086 0.914
45 H 0.047 0.953
46 H 0.077 0.923
47 H 0.340 0.660
48 H 0.051 0.949
49 H 0.007 0.993
50 H 0.018 0.982
51 H 0.022 0.978
52 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.908 -4.726 -29.927 30.358
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.058 4.058
3 C -0.204 4.204
4 C -0.054 4.054
5 N -0.241 5.241
6 C -0.033 4.033
7 C -0.129 4.129
8 C -0.135 4.135
9 C -0.150 4.150
10 C -0.151 4.151
11 C -0.153 4.153
12 C -0.140 4.140
13 C -0.066 4.066
14 C -0.141 4.141
15 C -0.011 4.011
16 H 0.033 0.967
17 N -0.314 5.314
18 C -0.039 4.039
19 C -0.039 4.039
20 C -0.573 4.573
21 H 0.047 0.953
22 C -0.192 4.192
23 N -0.592 5.592
24 Si 0.779 3.221
25 H -0.192 1.192
26 H -0.209 1.209
27 H -0.169 1.169
28 H 0.078 0.922
29 H 0.080 0.920
30 H 0.065 0.935
31 H 0.072 0.928
32 H 0.064 0.936
33 H 0.098 0.902
34 H 0.109 0.891
35 H 0.045 0.955
36 H 0.109 0.891
37 H 0.115 0.885
38 H 0.151 0.849
39 H 0.154 0.846
40 H 0.152 0.848
41 H 0.149 0.851
42 H 0.144 0.856
43 H 0.044 0.956
44 H 0.104 0.896
45 H 0.066 0.934
46 H 0.096 0.904
47 H 0.161 0.839
48 H 0.070 0.930
49 H 0.025 0.975
50 H 0.037 0.963
51 H 0.041 0.959
52 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -2.856 -5.194 -29.548 30.137
hybrid contribution 1.857 0.736 0.770 2.141
sum -0.999 -4.458 -28.778 29.138
Atomic orbital electron populations
1.21617 0.92628 1.02382 1.00889 1.20692 0.97596 0.94514 0.93040
1.21902 1.00386 0.95319 1.02754 1.22106 0.96945 0.88646 0.97714
1.62359 1.58046 1.02000 1.01736 1.21332 0.88556 1.00895 0.92531
1.20819 0.98253 0.95285 0.98546 1.21299 0.95277 0.98210 0.98680
1.21445 0.94164 0.99182 1.00196 1.21447 1.00798 0.94584 0.98262
1.21426 0.95329 0.99220 0.99348 1.21287 0.94129 0.98861 0.99728
1.22052 0.96823 0.98022 0.89733 1.21569 1.02173 0.94179 0.96216
1.21556 0.94912 0.95089 0.89586 0.96668 1.60612 1.49496 1.17778
1.03481 1.21617 0.92651 0.99341 0.90281 1.19404 0.96025 0.95873
0.92579 1.21403 1.08842 1.32609 0.94464 0.95327 1.26022 1.00609
0.97359 0.95193 1.70068 1.40444 1.47282 1.01391 0.85572 0.78972
0.78764 0.78782 1.19202 1.20890 1.16946 0.92215 0.91954 0.93521
0.92783 0.93630 0.90237 0.89134 0.95510 0.89051 0.88485 0.84929
0.84612 0.84840 0.85126 0.85647 0.95641 0.89602 0.93394 0.90438
0.83905 0.93013 0.97463 0.96330 0.95916 0.92406
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.51 7.84 71.98 0.56 -1.95 16
2 C -0.06 -1.26 0.53 -52.13 -0.03 -1.28 16
3 C -0.15 -2.99 8.28 71.98 0.60 -2.39 16
4 C 0.07 1.39 3.28 86.31 0.28 1.67 16
5 N -0.52 -9.45 4.14 -900.75 -3.73 -13.18 16
6 C 0.09 1.36 5.56 85.56 0.48 1.84 16
7 C -0.13 -2.10 4.03 -19.87 -0.08 -2.18 16
8 C -0.12 -1.83 8.03 22.27 0.18 -1.65 16
9 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16
10 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16
11 C -0.14 -2.33 10.05 22.27 0.22 -2.11 16
12 C -0.12 -2.12 8.12 22.27 0.18 -1.94 16
13 C 0.06 1.32 4.83 86.32 0.42 1.74 16
14 C -0.10 -2.74 5.24 30.65 0.16 -2.58 16
15 C 0.10 2.78 1.70 44.99 0.08 2.85 16
16 H 0.02 0.49 7.80 -2.39 -0.02 0.47 16
17 N -0.68 -22.75 5.56 -491.12 -2.73 -25.48 16
18 C 0.09 3.78 5.43 86.30 0.47 4.25 16
19 C 0.00 -0.05 4.30 29.85 0.13 0.08 16
20 C -0.53 -31.92 9.66 25.60 0.25 -31.67 16
21 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16
22 C 0.00 0.30 5.47 84.66 0.46 0.76 16
23 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16
24 Si 0.96 45.39 27.47 68.60 1.88 47.28 16
25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
27 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16
28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
29 H 0.06 1.43 6.01 -2.39 -0.01 1.41 16
30 H 0.05 1.12 7.35 -2.39 -0.02 1.10 16
31 H 0.05 1.20 6.32 -2.39 -0.02 1.19 16
32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
34 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16
35 H 0.03 0.58 6.48 -2.39 -0.02 0.56 16
36 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16
37 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16
38 H 0.13 1.65 8.03 -2.91 -0.02 1.63 16
39 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16
40 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16
41 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16
42 H 0.13 1.94 8.03 -2.91 -0.02 1.92 16
43 H 0.03 0.60 6.55 -2.39 -0.02 0.59 16
44 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16
45 H 0.05 1.43 7.55 -2.39 -0.02 1.42 16
46 H 0.08 2.12 6.58 -2.38 -0.02 2.10 16
47 H 0.34 10.77 6.03 -89.70 -0.54 10.22 16
48 H 0.05 2.26 7.51 -2.39 -0.02 2.25 16
49 H 0.01 0.31 8.06 -2.39 -0.02 0.29 16
50 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16
51 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16
52 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16
Total: -1.00 -67.59 388.56 0.80 -66.79
By element:
Atomic # 1 Polarization: 23.29 SS G_CDS: 0.27 Total: 23.57 kcal
Atomic # 6 Polarization: -43.19 SS G_CDS: 4.80 Total: -38.39 kcal
Atomic # 7 Polarization: -93.08 SS G_CDS: -6.16 Total: -99.25 kcal
Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal
Total: -67.59 0.80 -66.79 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000282594523.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.310 kcal
(2) G-P(sol) polarization free energy of solvation -67.585 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.475 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds