Wall clock time and date at job start Tue Mar 31 2020 10:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.53827 * 2 1 4 4 C 1.53040 * 109.50394 * 239.89834 * 2 1 3 5 5 N 1.46839 * 109.52544 * 180.88401 * 4 2 1 6 6 C 1.46901 * 111.00234 * 185.84103 * 5 4 2 7 7 C 1.50701 * 109.46921 * 301.83416 * 6 5 4 8 8 C 1.38233 * 120.00099 * 269.72682 * 7 6 5 9 9 C 1.38234 * 119.99645 * 179.78840 * 8 7 6 10 10 C 1.38232 * 120.00446 * 0.46326 * 9 8 7 11 11 C 1.38240 * 119.99683 * 359.76905 * 10 9 8 12 12 C 1.38234 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.46846 * 111.20112 * 61.74326 * 5 4 2 14 14 C 1.53041 * 109.52003 * 298.26039 * 13 5 4 15 15 C 1.53120 * 109.28215 * 59.17728 * 14 13 5 16 16 H 1.08998 * 109.52273 * 62.31269 * 15 14 13 17 17 N 1.46902 * 109.52351 * 182.43979 * 15 14 13 18 18 C 1.46895 * 110.99644 * 275.00035 * 17 15 14 19 19 C 1.53000 * 109.46719 * 180.02562 * 18 17 15 20 20 C 1.50706 * 109.47259 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99751 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99972 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00012 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00332 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47327 * 89.99575 * 24 22 20 26 26 H 1.48496 * 109.46978 * 209.99721 * 24 22 20 27 27 H 1.48500 * 109.46874 * 329.99482 * 24 22 20 28 28 H 1.09007 * 109.46992 * 299.90805 * 1 2 3 29 29 H 1.09001 * 109.46598 * 59.89903 * 1 2 3 30 30 H 1.08999 * 109.47664 * 179.90165 * 1 2 3 31 31 H 1.08998 * 109.47114 * 180.09944 * 3 2 1 32 32 H 1.08998 * 109.46659 * 300.09586 * 3 2 1 33 33 H 1.09000 * 109.46973 * 60.09941 * 3 2 1 34 34 H 1.08998 * 109.46004 * 60.86421 * 4 2 1 35 35 H 1.09001 * 109.46412 * 300.90079 * 4 2 1 36 36 H 1.09002 * 109.47401 * 181.83444 * 6 5 4 37 37 H 1.09001 * 109.46874 * 61.83457 * 6 5 4 38 38 H 1.08003 * 119.99927 * 359.97438 * 8 7 6 39 39 H 1.08005 * 119.99562 * 180.24672 * 9 8 7 40 40 H 1.07999 * 120.00216 * 179.79318 * 10 9 8 41 41 H 1.08000 * 119.99654 * 180.02562 * 11 10 9 42 42 H 1.07995 * 119.99943 * 179.97438 * 12 11 10 43 43 H 1.09002 * 109.46476 * 58.27156 * 13 5 4 44 44 H 1.08994 * 109.46671 * 178.24309 * 13 5 4 45 45 H 1.09001 * 109.50321 * 179.12207 * 14 13 5 46 46 H 1.08999 * 109.50410 * 299.19360 * 14 13 5 47 47 H 1.00899 * 110.99809 * 151.04941 * 17 15 14 48 48 H 1.08995 * 109.47663 * 299.99692 * 18 17 15 49 49 H 1.08999 * 109.47864 * 60.00167 * 18 17 15 50 50 H 1.08999 * 109.47319 * 299.99778 * 19 18 17 51 51 H 1.09005 * 109.47158 * 60.00123 * 19 18 17 52 52 H 0.96996 * 119.99995 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7423 -1.2378 6 6 4.0372 -1.3061 -2.4874 7 6 3.5010 -2.7019 -2.6747 8 6 4.1977 -3.7836 -2.1694 9 6 3.7035 -5.0636 -2.3374 10 6 2.5176 -5.2628 -3.0190 11 6 1.8232 -4.1814 -3.5285 12 6 2.3152 -2.9010 -3.3569 13 6 4.0229 -1.4732 -0.0724 14 6 3.5711 -0.7721 1.2108 15 6 2.0411 -0.7238 1.2488 16 1 1.6451 -1.7391 1.2702 17 7 1.6024 -0.0004 2.4497 18 6 1.5397 -0.8975 3.6111 19 6 1.0795 -0.1100 4.8395 20 6 1.0146 -1.0305 6.0310 21 1 1.2758 -2.0728 5.9230 22 6 0.6226 -0.5417 7.2592 23 7 0.5654 -1.3451 8.2989 24 14 0.1715 1.2613 7.4463 25 1 -1.2806 1.4374 7.1906 26 1 0.4893 1.7106 8.8255 27 1 0.9473 2.0694 6.4714 28 1 -0.3633 0.5124 0.8909 29 1 -0.3632 0.5154 -0.8891 30 1 -0.3634 -1.0276 -0.0018 31 1 3.1317 1.4406 -0.0018 32 1 1.6775 1.9566 -0.8891 33 1 1.6804 1.9556 0.8909 34 1 1.6905 -0.2024 -2.1389 35 1 1.6647 -1.7465 -1.2544 36 1 5.1257 -1.3383 -2.4401 37 1 3.7283 -0.6825 -3.3264 38 1 5.1266 -3.6284 -1.6407 39 1 4.2459 -5.9084 -1.9391 40 1 2.1332 -6.2631 -3.1532 41 1 0.8964 -4.3370 -4.0607 42 1 1.7730 -2.0563 -3.7553 43 1 3.6373 -2.4927 -0.0842 44 1 5.1119 -1.4965 -0.1093 45 1 3.9394 -1.3235 2.0758 46 1 3.9683 0.2428 1.2302 47 1 0.7144 0.4529 2.2945 48 1 0.8330 -1.7027 3.4106 49 1 2.5272 -1.3192 3.7984 50 1 1.7859 0.6954 5.0403 51 1 0.0918 0.3112 4.6520 52 1 0.2894 -1.0013 9.1629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282594529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:45 Heat of formation + Delta-G solvation = 17.342098 kcal Electronic energy + Delta-G solvation = -27367.534652 eV Core-core repulsion = 23944.918698 eV Total energy + Delta-G solvation = -3422.615954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54454 -39.09256 -36.29717 -34.34811 -32.72242 -32.19991 -31.19905 -30.63320 -28.99559 -27.11972 -26.94494 -25.68601 -24.12070 -22.88070 -22.23170 -21.66754 -20.84996 -20.31877 -18.26404 -17.01176 -16.73755 -16.09821 -15.76165 -15.46721 -15.26199 -14.89069 -14.61901 -14.53870 -14.09672 -13.71458 -13.65880 -13.43498 -13.32850 -12.89246 -12.74246 -12.62668 -12.51377 -12.33784 -11.99636 -11.84994 -11.61914 -11.56002 -11.40401 -11.27758 -11.13592 -11.09774 -10.98492 -10.66119 -10.39168 -10.11021 -9.94866 -9.79705 -9.56645 -9.19253 -9.16014 -9.02922 -8.51149 -8.41268 -7.84107 -6.02024 -4.00081 1.05980 1.13281 3.33928 3.41385 3.47043 3.47867 3.88217 4.48578 4.48689 4.52342 4.63191 4.67638 4.73919 4.82168 4.85509 4.91387 5.09756 5.22695 5.27801 5.31416 5.32828 5.38852 5.43549 5.48232 5.53687 5.65385 5.69333 5.74327 5.75401 5.77563 5.79511 5.94348 5.99823 6.04804 6.15311 6.17936 6.21637 6.24984 6.27846 6.32411 6.33317 6.37316 6.49266 6.70809 6.73126 6.83361 6.95765 6.98811 7.20584 7.42681 7.69052 7.82007 7.98360 8.56212 9.02281 9.60623 11.11406 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002898 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.413918 B = 9657.969369 C =10262.639040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.125 4.125 4 C 0.068 3.932 5 N -0.520 5.520 6 C 0.091 3.909 7 C -0.120 4.120 8 C -0.108 4.108 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.122 4.122 12 C -0.109 4.109 13 C 0.053 3.947 14 C -0.106 4.106 15 C 0.098 3.902 16 H 0.033 0.967 17 N -0.686 5.686 18 C 0.075 3.925 19 C -0.009 4.009 20 C -0.520 4.520 21 H 0.070 0.930 22 C 0.066 3.934 23 N -0.905 5.905 24 Si 0.881 3.119 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.263 1.263 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.335 0.665 48 H 0.018 0.982 49 H 0.063 0.937 50 H 0.025 0.975 51 H 0.007 0.993 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -1.859 -27.585 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.182 4.182 4 C -0.061 4.061 5 N -0.242 5.242 6 C -0.036 4.036 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.139 4.139 10 C -0.140 4.140 11 C -0.140 4.140 12 C -0.127 4.127 13 C -0.075 4.075 14 C -0.144 4.144 15 C -0.012 4.012 16 H 0.051 0.949 17 N -0.319 5.319 18 C -0.054 4.054 19 C -0.047 4.047 20 C -0.558 4.558 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.544 5.544 24 Si 0.709 3.291 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.187 1.187 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.154 0.846 48 H 0.036 0.964 49 H 0.081 0.919 50 H 0.043 0.957 51 H 0.025 0.975 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.114 -1.114 -27.176 27.877 hybrid contribution -1.480 -0.750 0.049 1.660 sum 4.635 -1.864 -27.126 27.583 Atomic orbital electron populations 1.21911 0.94830 1.01647 1.02101 1.20717 0.94595 0.97093 0.93914 1.21688 1.02245 0.93603 1.00657 1.22156 0.87138 0.98876 0.97902 1.62335 1.08418 1.51975 1.01444 1.21275 0.99976 0.89216 0.93158 1.20720 0.95955 0.97105 0.98410 1.21099 0.99838 0.92328 0.99436 1.21179 0.96481 0.97142 0.99062 1.21169 0.95501 0.98929 0.98361 1.21158 0.99865 0.92809 1.00160 1.21073 0.95839 0.97048 0.98785 1.22188 0.99489 0.95538 0.90323 1.21621 0.95330 1.02004 0.95464 1.21481 0.95319 0.94952 0.89443 0.94863 1.60673 1.35320 1.32478 1.03414 1.21971 0.99848 0.93656 0.89885 1.19537 0.95662 0.96558 0.92917 1.21084 1.45473 0.97096 0.92180 0.91214 1.25012 0.94960 0.97723 0.95773 1.69921 1.48514 1.35433 1.00546 0.86745 0.79067 0.85985 0.77338 1.20448 1.21474 1.18695 0.91898 0.92465 0.93003 0.91277 0.94041 0.92204 0.91073 0.94440 0.89880 0.89938 0.86168 0.86114 0.86226 0.86199 0.86270 0.94612 0.90924 0.91497 0.90135 0.84557 0.96374 0.91873 0.95655 0.97467 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.28 37.16 0.31 -1.34 16 2 C -0.06 -0.73 0.54 -154.43 -0.08 -0.82 16 3 C -0.12 -1.48 7.85 37.16 0.29 -1.19 16 4 C 0.07 0.71 3.26 -3.84 -0.01 0.70 16 5 N -0.52 -5.28 4.14 -236.12 -0.98 -6.26 16 6 C 0.09 0.77 5.56 -4.97 -0.03 0.75 16 7 C -0.12 -1.09 4.03 -104.62 -0.42 -1.51 16 8 C -0.11 -0.99 8.13 -39.58 -0.32 -1.31 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 10 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 11 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 12 C -0.11 -0.96 8.02 -39.58 -0.32 -1.28 16 13 C 0.05 0.59 4.84 -3.83 -0.02 0.57 16 14 C -0.11 -1.42 5.23 -26.65 -0.14 -1.56 16 15 C 0.10 1.40 1.71 -67.59 -0.12 1.29 16 16 H 0.03 0.53 7.80 -51.93 -0.41 0.12 16 17 N -0.69 -11.60 5.55 -106.60 -0.59 -12.19 16 18 C 0.07 1.54 5.42 -3.83 -0.02 1.52 16 19 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 20 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 21 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 24 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 28 H 0.06 0.75 6.32 -51.92 -0.33 0.42 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.87 6.01 -51.93 -0.31 0.56 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.78 7.35 -51.93 -0.38 0.40 16 34 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.04 0.44 6.47 -51.93 -0.34 0.10 16 36 H 0.08 0.64 8.00 -51.93 -0.42 0.23 16 37 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.12 0.97 8.05 -52.48 -0.42 0.55 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.90 8.02 -52.49 -0.42 0.48 16 43 H 0.04 0.43 6.56 -51.93 -0.34 0.09 16 44 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.07 0.98 7.52 -51.93 -0.39 0.59 16 46 H 0.08 1.13 6.59 -51.93 -0.34 0.79 16 47 H 0.33 5.45 6.05 -39.29 -0.24 5.21 16 48 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 49 H 0.06 1.33 7.49 -51.93 -0.39 0.94 16 50 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 51 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 52 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -30.96 388.53 -11.52 -42.48 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -9.29 Total: 2.65 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.62 Total: -22.48 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.80 Total: -46.00 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.96 -11.52 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282594529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.825 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds