Wall clock time and date at job start Tue Mar 31 2020 11:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 H 1.09005 * 109.46552 * 306.40290 * 3 2 1 5 5 C 1.50701 * 109.46984 * 186.40550 * 3 2 1 6 6 H 1.08003 * 119.99655 * 244.92681 * 5 3 2 7 7 C 1.37877 * 120.00027 * 64.92840 * 5 3 2 8 8 N 1.31510 * 120.00005 * 192.13732 * 7 5 3 9 9 Si 1.86801 * 119.99937 * 12.14038 * 7 5 3 10 10 H 1.48507 * 109.46986 * 93.64486 * 9 7 5 11 11 H 1.48499 * 109.46879 * 213.63978 * 9 7 5 12 12 H 1.48492 * 109.47174 * 333.64271 * 9 7 5 13 13 N 1.46898 * 109.46900 * 66.40427 * 3 2 1 14 14 C 1.46901 * 111.00104 * 263.85199 * 13 3 2 15 15 H 1.09002 * 109.46923 * 40.13539 * 14 13 3 16 16 C 1.53001 * 109.47208 * 280.13977 * 14 13 3 17 17 C 1.52996 * 109.47393 * 160.13612 * 14 13 3 18 18 H 1.08998 * 110.64803 * 173.79315 * 17 14 13 19 19 C 1.54598 * 110.72380 * 296.94506 * 17 14 13 20 20 C 1.53990 * 105.14146 * 140.31612 * 19 17 14 21 21 N 1.47898 * 107.05930 * 1.21853 * 20 19 17 22 22 C 1.46897 * 111.00479 * 214.16009 * 21 20 19 23 23 C 1.50695 * 109.47003 * 69.87328 * 22 21 20 24 24 C 1.38236 * 119.99906 * 269.72762 * 23 22 21 25 25 C 1.38244 * 119.99468 * 179.78891 * 24 23 22 26 26 C 1.38235 * 120.00297 * 0.46481 * 25 24 23 27 27 C 1.38237 * 119.99722 * 359.77125 * 26 25 24 28 28 C 1.38235 * 120.00460 * 0.02562 * 27 26 25 29 29 C 1.48539 * 105.82326 * 334.67665 * 21 20 19 30 30 H 1.09003 * 109.47065 * 62.83302 * 1 2 3 31 31 H 1.08999 * 109.47305 * 182.83370 * 1 2 3 32 32 H 1.09004 * 109.47293 * 302.83290 * 1 2 3 33 33 H 1.09001 * 109.47030 * 240.00055 * 2 1 3 34 34 H 1.09001 * 109.46973 * 119.99846 * 2 1 3 35 35 H 0.97001 * 120.00401 * 180.02562 * 8 7 5 36 36 H 1.00902 * 111.00157 * 139.90482 * 13 3 2 37 37 H 1.08996 * 109.47080 * 305.10010 * 16 14 13 38 38 H 1.08997 * 109.47418 * 65.10480 * 16 14 13 39 39 H 1.09004 * 109.47144 * 185.10200 * 16 14 13 40 40 H 1.08997 * 110.30866 * 21.39397 * 19 17 14 41 41 H 1.09003 * 110.39109 * 259.27233 * 19 17 14 42 42 H 1.08999 * 109.91447 * 241.87189 * 20 19 17 43 43 H 1.08994 * 109.91855 * 120.57909 * 20 19 17 44 44 H 1.09001 * 109.47617 * 189.87835 * 22 21 20 45 45 H 1.09004 * 109.46824 * 309.87294 * 22 21 20 46 46 H 1.07991 * 120.00262 * 0.02562 * 24 23 22 47 47 H 1.08006 * 119.99640 * 180.25328 * 25 24 23 48 48 H 1.07993 * 120.00105 * 179.78545 * 26 25 24 49 49 H 1.07996 * 119.99810 * 180.02562 * 27 26 25 50 50 H 1.07989 * 120.00394 * 179.97438 * 28 27 26 51 51 H 1.08993 * 110.67027 * 157.63543 * 29 21 20 52 52 H 1.08999 * 110.66348 * 280.77438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5860 1.9883 -0.8272 5 6 3.5387 1.4454 -0.1585 6 1 4.1655 1.8111 0.6414 7 6 4.1095 0.9814 -1.3246 8 7 5.4043 0.7584 -1.3795 9 14 3.0435 0.6694 -2.8266 10 1 3.0417 1.8766 -3.6916 11 1 3.5864 -0.4842 -3.5879 12 1 1.6552 0.3681 -2.3943 13 7 1.6805 2.0889 1.2692 14 6 0.4383 2.8611 1.1334 15 1 -0.2692 2.3058 0.5176 16 6 0.7438 4.2065 0.4719 17 6 -0.1681 3.0995 2.5177 18 1 -1.0305 3.7626 2.4506 19 6 -0.5589 1.7593 3.1819 20 6 -0.1720 1.9169 4.6640 21 7 0.3761 3.2809 4.8266 22 6 1.4464 3.3019 5.8326 23 6 2.6553 2.5806 5.2948 24 6 2.8028 1.2232 5.5104 25 6 3.9097 0.5608 5.0133 26 6 4.8737 1.2576 4.3090 27 6 4.7285 2.6160 4.0977 28 6 3.6197 3.2776 4.5911 29 6 0.8939 3.6714 3.4903 30 1 -0.3633 0.4692 -0.9143 31 1 -0.3634 -1.0264 0.0508 32 1 -0.3634 0.5572 0.8635 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8060 0.4322 -2.2000 36 1 2.4333 2.6712 1.6044 37 1 1.5182 4.7227 1.0391 38 1 1.0905 4.0396 -0.5479 39 1 -0.1600 4.8157 0.4532 40 1 -0.0030 0.9373 2.7310 41 1 -1.6311 1.5869 3.0871 42 1 0.5843 1.1787 4.9308 43 1 -1.0534 1.7934 5.2931 44 1 1.7108 4.3345 6.0604 45 1 1.1016 2.8065 6.7402 46 1 2.0516 0.6795 6.0638 47 1 4.0230 -0.5006 5.1782 48 1 5.7401 0.7407 3.9237 49 1 5.4815 3.1603 3.5471 50 1 3.5064 4.3389 4.4263 51 1 0.9518 4.7562 3.4020 52 1 1.8675 3.2168 3.3072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289068341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:39 Heat of formation + Delta-G solvation = 34.187278 kcal Electronic energy + Delta-G solvation = -29024.025268 eV Core-core repulsion = 25602.139776 eV Total energy + Delta-G solvation = -3421.885492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.06222 -38.29415 -36.63694 -33.89683 -32.23439 -31.72203 -30.70918 -29.74341 -28.96953 -27.73282 -26.49808 -25.40688 -22.69910 -22.44237 -22.07539 -21.15036 -20.34993 -19.56280 -19.06940 -16.86108 -16.55622 -15.80908 -15.58812 -15.26452 -14.90317 -14.71310 -14.13207 -13.85760 -13.56315 -13.29863 -13.16733 -13.08938 -12.89726 -12.71556 -12.56148 -12.27287 -12.17394 -11.84834 -11.81303 -11.54638 -11.40780 -11.20929 -11.09626 -10.92176 -10.87207 -10.69967 -10.67453 -10.49352 -10.32918 -10.08310 -9.83318 -9.77146 -9.21249 -9.04263 -8.56657 -8.48295 -8.41211 -8.17182 -7.34559 -6.11430 -4.06941 1.64863 1.71420 3.25987 3.36248 3.39969 4.05511 4.33986 4.40655 4.88095 4.93071 5.00362 5.10140 5.18413 5.24953 5.27207 5.34021 5.44260 5.47193 5.61588 5.70343 5.77910 5.79863 5.82395 5.85809 5.91950 5.96789 6.02570 6.07242 6.07580 6.22906 6.25552 6.28890 6.30910 6.31246 6.37050 6.44065 6.45311 6.61770 6.66552 6.75225 6.76783 6.80942 6.84546 6.89164 7.06949 7.09231 7.13946 7.21876 7.30956 7.49107 7.68927 8.04120 8.41345 8.66460 8.97689 9.54867 11.01497 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.005701 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.975355 B = 4910.138437 C = 6022.090884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.193 3.807 4 H 0.001 0.999 5 C -0.521 4.521 6 H 0.075 0.925 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.860 3.140 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.666 5.666 14 C 0.082 3.918 15 H 0.079 0.921 16 C -0.179 4.179 17 C -0.076 4.076 18 H 0.069 0.931 19 C -0.122 4.122 20 C 0.031 3.969 21 N -0.509 5.509 22 C 0.084 3.916 23 C -0.120 4.120 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.104 4.104 27 C -0.109 4.109 28 C -0.107 4.107 29 C 0.027 3.973 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.337 0.663 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.115 0.885 51 H 0.066 0.934 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 3.620 12.383 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C 0.084 3.916 4 H 0.018 0.982 5 C -0.559 4.559 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.687 3.313 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.297 5.297 14 C -0.030 4.030 15 H 0.097 0.903 16 C -0.238 4.238 17 C -0.096 4.096 18 H 0.087 0.913 19 C -0.160 4.160 20 C -0.097 4.097 21 N -0.231 5.231 22 C -0.044 4.044 23 C -0.122 4.122 24 C -0.129 4.129 25 C -0.133 4.133 26 C -0.122 4.122 27 C -0.127 4.127 28 C -0.126 4.126 29 C -0.100 4.100 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.157 0.843 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.133 0.867 51 H 0.085 0.915 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.027 3.361 12.724 15.959 hybrid contribution 0.596 -0.054 -1.915 2.007 sum -8.431 3.307 10.809 14.101 Atomic orbital electron populations 1.22044 0.98914 0.99691 1.00790 1.21868 0.92510 0.99632 1.00626 1.19412 0.95462 0.90534 0.86230 0.98152 1.21172 0.89527 1.42954 1.02274 0.90690 1.24881 0.94667 0.94435 0.98595 1.69950 1.10833 1.45022 1.27383 0.87279 0.82696 0.77822 0.83483 1.21060 1.21503 1.17160 1.60649 1.04392 1.33861 1.30847 1.21663 0.94603 0.92505 0.94190 0.90285 1.22512 1.00919 0.98733 1.01671 1.22048 0.97065 0.96138 0.94319 0.91277 1.22417 1.00286 0.99196 0.94089 1.22914 0.99179 0.90276 0.97330 1.65152 1.28203 1.22950 1.06814 1.21306 0.87730 0.99954 0.95422 1.20389 0.96955 0.94659 1.00153 1.20911 0.97449 0.93862 1.00649 1.21061 0.94500 0.99463 0.98302 1.21137 0.99193 0.94459 0.97400 1.21117 0.97827 0.94907 0.98840 1.20941 0.93971 0.99418 0.98281 1.23533 0.99456 0.99663 0.87348 0.94534 0.94789 0.91806 0.93306 0.92500 0.92815 0.84315 0.92854 0.92489 0.93356 0.89172 0.92624 0.92817 0.91588 0.90299 0.90610 0.86877 0.86613 0.86236 0.86224 0.86735 0.91548 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.81 37.16 0.33 -2.50 16 2 C -0.11 -2.32 4.80 -26.73 -0.13 -2.45 16 3 C 0.19 4.29 1.57 -68.86 -0.11 4.18 16 4 H 0.00 0.02 5.57 -51.93 -0.29 -0.27 16 5 C -0.52 -13.88 9.02 -34.44 -0.31 -14.19 16 6 H 0.08 2.17 7.75 -52.48 -0.41 1.77 16 7 C 0.08 2.14 5.37 -17.82 -0.10 2.04 16 8 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 9 Si 0.86 20.94 25.73 -169.99 -4.37 16.56 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.25 -5.69 5.32 56.52 0.30 -5.39 16 13 N -0.67 -12.53 4.67 -100.95 -0.47 -13.00 16 14 C 0.08 1.31 1.49 -67.71 -0.10 1.21 16 15 H 0.08 1.32 5.52 -51.93 -0.29 1.04 16 16 C -0.18 -2.79 8.94 37.16 0.33 -2.45 16 17 C -0.08 -1.07 2.91 -88.76 -0.26 -1.33 16 18 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.12 -1.69 5.95 -25.38 -0.15 -1.84 16 20 C 0.03 0.40 6.46 -2.76 -0.02 0.38 16 21 N -0.51 -6.64 5.54 -231.90 -1.28 -7.93 16 22 C 0.08 1.00 5.69 -4.98 -0.03 0.97 16 23 C -0.12 -1.59 3.95 -104.62 -0.41 -2.00 16 24 C -0.11 -1.48 8.19 -39.58 -0.32 -1.81 16 25 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 26 C -0.10 -1.59 10.05 -39.58 -0.40 -1.99 16 27 C -0.11 -1.64 10.05 -39.58 -0.40 -2.03 16 28 C -0.11 -1.49 7.49 -39.58 -0.30 -1.78 16 29 C 0.03 0.38 4.79 -1.89 -0.01 0.37 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.07 3.93 -51.93 -0.20 0.86 16 33 H 0.05 1.12 4.73 -51.93 -0.25 0.88 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.34 6.73 6.30 -39.29 -0.25 6.48 16 37 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 38 H 0.06 0.98 7.31 -51.93 -0.38 0.61 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.43 5.93 -51.93 -0.31 1.13 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.72 4.88 -51.93 -0.25 0.47 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 46 H 0.11 1.34 7.19 -52.49 -0.38 0.96 16 47 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 48 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 50 H 0.11 1.44 8.05 -52.49 -0.42 1.02 16 51 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.08 1.27 2.85 -51.93 -0.15 1.12 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -28.10 376.43 -11.15 -39.25 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -8.69 Total: 12.50 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -2.78 Total: -27.27 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.98 Total: -46.71 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.37 Total: 16.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.10 -11.15 -39.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289068341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.434 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds