Wall clock time and date at job start Tue Mar 31 2020 11:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 H 1.09005 * 109.46552 * 306.40290 * 3 2 1 5 5 C 1.50701 * 109.46984 * 186.40550 * 3 2 1 6 6 H 1.08003 * 119.99655 * 244.92681 * 5 3 2 7 7 C 1.37877 * 120.00027 * 64.92840 * 5 3 2 8 8 N 1.31510 * 120.00005 * 192.13732 * 7 5 3 9 9 Si 1.86801 * 119.99937 * 12.14038 * 7 5 3 10 10 H 1.48507 * 109.46986 * 93.64486 * 9 7 5 11 11 H 1.48499 * 109.46879 * 213.63978 * 9 7 5 12 12 H 1.48492 * 109.47174 * 333.64271 * 9 7 5 13 13 N 1.46898 * 109.46900 * 66.40427 * 3 2 1 14 14 C 1.46901 * 111.00104 * 263.85199 * 13 3 2 15 15 H 1.09002 * 109.46923 * 40.13539 * 14 13 3 16 16 C 1.53001 * 109.47208 * 280.13977 * 14 13 3 17 17 C 1.52996 * 109.47393 * 160.13612 * 14 13 3 18 18 H 1.08998 * 110.64803 * 173.79315 * 17 14 13 19 19 C 1.54598 * 110.72380 * 296.94506 * 17 14 13 20 20 C 1.53990 * 105.14146 * 140.31612 * 19 17 14 21 21 N 1.47898 * 107.05930 * 1.21853 * 20 19 17 22 22 C 1.46897 * 111.00479 * 214.16009 * 21 20 19 23 23 C 1.50695 * 109.47003 * 69.87328 * 22 21 20 24 24 C 1.38236 * 119.99906 * 269.72762 * 23 22 21 25 25 C 1.38244 * 119.99468 * 179.78891 * 24 23 22 26 26 C 1.38235 * 120.00297 * 0.46481 * 25 24 23 27 27 C 1.38237 * 119.99722 * 359.77125 * 26 25 24 28 28 C 1.38235 * 120.00460 * 0.02562 * 27 26 25 29 29 C 1.48539 * 105.82326 * 334.67665 * 21 20 19 30 30 H 1.09003 * 109.47065 * 62.83302 * 1 2 3 31 31 H 1.08999 * 109.47305 * 182.83370 * 1 2 3 32 32 H 1.09004 * 109.47293 * 302.83290 * 1 2 3 33 33 H 1.09001 * 109.47030 * 240.00055 * 2 1 3 34 34 H 1.09001 * 109.46973 * 119.99846 * 2 1 3 35 35 H 0.97001 * 120.00401 * 180.02562 * 8 7 5 36 36 H 1.00902 * 111.00157 * 139.90482 * 13 3 2 37 37 H 1.08996 * 109.47080 * 305.10010 * 16 14 13 38 38 H 1.08997 * 109.47418 * 65.10480 * 16 14 13 39 39 H 1.09004 * 109.47144 * 185.10200 * 16 14 13 40 40 H 1.08997 * 110.30866 * 21.39397 * 19 17 14 41 41 H 1.09003 * 110.39109 * 259.27233 * 19 17 14 42 42 H 1.08999 * 109.91447 * 241.87189 * 20 19 17 43 43 H 1.08994 * 109.91855 * 120.57909 * 20 19 17 44 44 H 1.09001 * 109.47617 * 189.87835 * 22 21 20 45 45 H 1.09004 * 109.46824 * 309.87294 * 22 21 20 46 46 H 1.07991 * 120.00262 * 0.02562 * 24 23 22 47 47 H 1.08006 * 119.99640 * 180.25328 * 25 24 23 48 48 H 1.07993 * 120.00105 * 179.78545 * 26 25 24 49 49 H 1.07996 * 119.99810 * 180.02562 * 27 26 25 50 50 H 1.07989 * 120.00394 * 179.97438 * 28 27 26 51 51 H 1.08993 * 110.67027 * 157.63543 * 29 21 20 52 52 H 1.08999 * 110.66348 * 280.77438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5860 1.9883 -0.8272 5 6 3.5387 1.4454 -0.1585 6 1 4.1655 1.8111 0.6414 7 6 4.1095 0.9814 -1.3246 8 7 5.4043 0.7584 -1.3795 9 14 3.0435 0.6694 -2.8266 10 1 3.0417 1.8766 -3.6916 11 1 3.5864 -0.4842 -3.5879 12 1 1.6552 0.3681 -2.3943 13 7 1.6805 2.0889 1.2692 14 6 0.4383 2.8611 1.1334 15 1 -0.2692 2.3058 0.5176 16 6 0.7438 4.2065 0.4719 17 6 -0.1681 3.0995 2.5177 18 1 -1.0305 3.7626 2.4506 19 6 -0.5589 1.7593 3.1819 20 6 -0.1720 1.9169 4.6640 21 7 0.3761 3.2809 4.8266 22 6 1.4464 3.3019 5.8326 23 6 2.6553 2.5806 5.2948 24 6 2.8028 1.2232 5.5104 25 6 3.9097 0.5608 5.0133 26 6 4.8737 1.2576 4.3090 27 6 4.7285 2.6160 4.0977 28 6 3.6197 3.2776 4.5911 29 6 0.8939 3.6714 3.4903 30 1 -0.3633 0.4692 -0.9143 31 1 -0.3634 -1.0264 0.0508 32 1 -0.3634 0.5572 0.8635 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8060 0.4322 -2.2000 36 1 2.4333 2.6712 1.6044 37 1 1.5182 4.7227 1.0391 38 1 1.0905 4.0396 -0.5479 39 1 -0.1600 4.8157 0.4532 40 1 -0.0030 0.9373 2.7310 41 1 -1.6311 1.5869 3.0871 42 1 0.5843 1.1787 4.9308 43 1 -1.0534 1.7934 5.2931 44 1 1.7108 4.3345 6.0604 45 1 1.1016 2.8065 6.7402 46 1 2.0516 0.6795 6.0638 47 1 4.0230 -0.5006 5.1782 48 1 5.7401 0.7407 3.9237 49 1 5.4815 3.1603 3.5471 50 1 3.5064 4.3389 4.4263 51 1 0.9518 4.7562 3.4020 52 1 1.8675 3.2168 3.3072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289068341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:37 Heat of formation + Delta-G solvation = 17.799688 kcal Electronic energy + Delta-G solvation = -29024.735887 eV Core-core repulsion = 25602.139776 eV Total energy + Delta-G solvation = -3422.596111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15990 -39.53242 -38.03474 -35.41470 -33.95909 -33.17854 -31.82911 -31.07271 -30.22602 -28.91703 -28.22790 -26.50806 -24.37826 -23.70075 -23.24323 -22.31307 -21.61441 -21.04095 -20.35949 -18.79891 -17.66107 -17.31437 -16.74633 -16.66740 -16.08818 -15.86398 -15.70017 -15.17131 -14.83020 -14.78678 -14.59279 -14.50931 -14.25011 -14.05112 -13.78949 -13.65717 -13.52245 -13.42550 -13.10550 -12.88243 -12.72368 -12.69572 -12.37534 -12.21975 -12.16171 -12.12400 -12.01275 -11.73768 -11.72498 -11.50968 -11.32650 -11.19616 -10.97733 -10.83930 -10.56371 -9.69319 -9.54359 -9.22112 -8.90484 -8.28625 -6.27174 0.51637 0.58367 1.30535 1.35715 1.44992 2.34713 2.93111 3.07252 3.29226 3.62468 3.80726 3.91279 3.97432 4.07656 4.18205 4.21842 4.30377 4.41687 4.43056 4.48501 4.52631 4.57190 4.60970 4.68689 4.69140 4.70436 4.81892 4.83550 4.91191 4.94893 4.99062 5.06835 5.11033 5.16709 5.19331 5.20881 5.23643 5.27671 5.30207 5.38938 5.45059 5.49898 5.57769 5.62675 5.62905 5.72517 5.74041 5.86694 6.07982 6.11999 6.19093 6.20065 6.59090 6.79387 6.96343 7.38785 8.87612 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.005701 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.975355 B = 4910.138437 C = 6022.090884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.201 3.799 4 H -0.003 1.003 5 C -0.517 4.517 6 H 0.037 0.963 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.919 3.081 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.223 1.223 13 N -0.659 5.659 14 C 0.082 3.918 15 H 0.079 0.921 16 C -0.176 4.176 17 C -0.070 4.070 18 H 0.085 0.915 19 C -0.120 4.120 20 C 0.031 3.969 21 N -0.505 5.505 22 C 0.086 3.914 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.109 4.109 29 C 0.028 3.972 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.329 0.671 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.134 0.866 47 H 0.128 0.872 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.126 0.874 51 H 0.071 0.929 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 4.054 13.232 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C 0.092 3.908 4 H 0.014 0.986 5 C -0.555 4.555 6 H 0.055 0.945 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.744 3.256 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.146 1.146 13 N -0.290 5.290 14 C -0.029 4.029 15 H 0.097 0.903 16 C -0.235 4.235 17 C -0.089 4.089 18 H 0.103 0.897 19 C -0.158 4.158 20 C -0.097 4.097 21 N -0.227 5.227 22 C -0.042 4.042 23 C -0.117 4.117 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.128 4.128 29 C -0.100 4.100 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.152 0.848 47 H 0.146 0.854 48 H 0.129 0.871 49 H 0.132 0.868 50 H 0.144 0.856 51 H 0.089 0.911 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.759 3.803 13.591 19.025 hybrid contribution 1.795 -0.148 -2.087 2.757 sum -10.964 3.655 11.504 16.307 Atomic orbital electron populations 1.21948 0.95633 1.01332 1.01636 1.21757 0.95403 0.98193 0.99180 1.19221 0.92271 0.91669 0.87680 0.98558 1.21465 0.91844 1.41307 1.00878 0.94521 1.25667 0.95707 0.94671 1.01634 1.70094 1.12856 1.47135 1.28163 0.86332 0.82236 0.77428 0.79648 1.20953 1.21772 1.14558 1.60627 1.05160 1.34503 1.28687 1.21740 0.93022 0.92296 0.95829 0.90279 1.22459 1.02040 0.98850 1.00114 1.21993 0.97330 0.96802 0.92807 0.89665 1.22378 1.01003 0.97994 0.94462 1.22948 0.99681 0.90000 0.97026 1.65190 1.28244 1.22960 1.06298 1.21404 0.86631 1.00633 0.95559 1.20599 0.97147 0.94660 0.99304 1.21177 0.97332 0.94161 1.00276 1.21276 0.94627 1.00227 0.98201 1.21240 0.99804 0.94938 0.98689 1.21212 0.98692 0.95060 0.99654 1.21090 0.93606 1.00040 0.98031 1.23473 0.98619 0.99823 0.88093 0.94052 0.92884 0.90511 0.94912 0.93885 0.92932 0.85223 0.93082 0.94678 0.90697 0.91384 0.90927 0.93436 0.89827 0.89229 0.88853 0.84798 0.85388 0.87135 0.86835 0.85590 0.91083 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 8.81 71.98 0.63 -4.27 16 2 C -0.11 -4.48 4.80 30.59 0.15 -4.33 16 3 C 0.20 8.92 1.57 44.17 0.07 8.99 16 4 H 0.00 -0.14 5.57 -2.38 -0.01 -0.16 16 5 C -0.52 -28.43 9.02 25.60 0.23 -28.19 16 6 H 0.04 2.25 7.75 -2.91 -0.02 2.23 16 7 C 0.02 1.21 5.37 84.66 0.45 1.66 16 8 N -0.94 -58.23 13.96 21.45 0.30 -57.94 16 9 Si 0.92 43.57 25.73 68.60 1.77 45.34 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 12 H -0.22 -9.59 5.32 99.48 0.53 -9.06 16 13 N -0.66 -24.50 4.67 -473.30 -2.21 -26.71 16 14 C 0.08 2.45 1.49 44.91 0.07 2.52 16 15 H 0.08 2.41 5.52 -2.39 -0.01 2.40 16 16 C -0.18 -5.13 8.94 71.98 0.64 -4.49 16 17 C -0.07 -1.75 2.91 -9.59 -0.03 -1.78 16 18 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 19 C -0.12 -2.93 5.95 31.47 0.19 -2.75 16 20 C 0.03 0.70 6.46 86.45 0.56 1.26 16 21 N -0.51 -11.51 5.54 -887.60 -4.91 -16.42 16 22 C 0.09 1.78 5.69 85.56 0.49 2.26 16 23 C -0.12 -2.89 3.95 -19.87 -0.08 -2.97 16 24 C -0.11 -2.85 8.19 22.27 0.18 -2.67 16 25 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 26 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 27 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 28 C -0.11 -3.02 7.49 22.27 0.17 -2.85 16 29 C 0.03 0.70 4.79 86.65 0.41 1.12 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 2.34 3.93 -2.39 -0.01 2.33 16 33 H 0.03 1.46 4.73 -2.39 -0.01 1.45 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.33 13.36 6.30 -89.69 -0.57 12.80 16 37 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 38 H 0.03 1.16 7.31 -2.39 -0.02 1.15 16 39 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.07 1.99 5.93 -2.39 -0.01 1.98 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.14 4.88 -2.39 -0.01 1.12 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 45 H 0.09 1.65 8.02 -2.39 -0.02 1.63 16 46 H 0.13 2.85 7.19 -2.92 -0.02 2.83 16 47 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 48 H 0.11 3.65 8.06 -2.91 -0.02 3.62 16 49 H 0.11 3.60 8.06 -2.91 -0.02 3.57 16 50 H 0.13 3.11 8.05 -2.92 -0.02 3.08 16 51 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.07 1.94 2.85 -2.39 -0.01 1.93 16 Total: -1.00 -62.06 376.43 -0.09 -62.15 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: 0.16 Total: 41.32 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 4.81 Total: -47.73 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -6.82 Total: -101.07 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.77 Total: 45.34 kcal Total: -62.06 -0.09 -62.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289068341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.948 kcal (2) G-P(sol) polarization free energy of solvation -62.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds