Wall clock time and date at job start Tue Mar 31 2020 11:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 H 1.08997 * 109.47106 * 305.28179 * 3 2 1 5 5 C 1.50704 * 109.47062 * 185.28430 * 3 2 1 6 6 H 1.07994 * 120.00016 * 239.99938 * 5 3 2 7 7 C 1.37885 * 119.99557 * 59.99941 * 5 3 2 8 8 N 1.31506 * 120.00383 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99502 * 179.72366 * 7 5 3 10 10 H 1.48504 * 109.47082 * 89.99889 * 9 7 5 11 11 H 1.48494 * 109.46879 * 210.00121 * 9 7 5 12 12 H 1.48500 * 109.47202 * 330.00124 * 9 7 5 13 13 N 1.46894 * 109.46917 * 65.28652 * 3 2 1 14 14 C 1.46906 * 110.99513 * 215.60298 * 13 3 2 15 15 H 1.08995 * 109.47346 * 33.82529 * 14 13 3 16 16 C 1.53009 * 109.46943 * 273.82649 * 14 13 3 17 17 C 1.52999 * 109.47243 * 153.82905 * 14 13 3 18 18 H 1.09000 * 110.27434 * 61.91272 * 17 14 13 19 19 C 1.54597 * 110.30853 * 299.72294 * 17 14 13 20 20 C 1.54929 * 102.92585 * 219.12719 * 19 17 14 21 21 N 1.48529 * 103.22730 * 37.40916 * 20 19 17 22 22 C 1.46895 * 111.00548 * 200.28137 * 21 20 19 23 23 C 1.50707 * 109.47161 * 287.39895 * 22 21 20 24 24 C 1.38231 * 120.00116 * 269.72683 * 23 22 21 25 25 C 1.38239 * 119.99715 * 179.78649 * 24 23 22 26 26 C 1.38234 * 120.00279 * 0.46052 * 25 24 23 27 27 C 1.38235 * 119.99637 * 359.77284 * 26 25 24 28 28 C 1.38231 * 120.00371 * 0.02562 * 27 26 25 29 29 C 1.47900 * 105.82360 * 320.80088 * 21 20 19 30 30 H 1.08997 * 109.47509 * 302.49830 * 1 2 3 31 31 H 1.08997 * 109.47138 * 62.50279 * 1 2 3 32 32 H 1.09007 * 109.46657 * 182.50063 * 1 2 3 33 33 H 1.09006 * 109.47226 * 239.99947 * 2 1 3 34 34 H 1.08997 * 109.47399 * 119.99865 * 2 1 3 35 35 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.00898 * 111.00345 * 339.54905 * 13 3 2 37 37 H 1.08997 * 109.46707 * 180.02562 * 16 14 13 38 38 H 1.08995 * 109.47002 * 300.00090 * 16 14 13 39 39 H 1.08996 * 109.47094 * 60.00244 * 16 14 13 40 40 H 1.09004 * 110.72615 * 337.48862 * 19 17 14 41 41 H 1.09001 * 110.72430 * 100.76203 * 19 17 14 42 42 H 1.09007 * 110.66383 * 278.98113 * 20 19 17 43 43 H 1.09000 * 110.81586 * 155.91905 * 20 19 17 44 44 H 1.08997 * 109.47015 * 47.39704 * 22 21 20 45 45 H 1.08997 * 109.47713 * 167.40045 * 22 21 20 46 46 H 1.08001 * 120.00190 * 359.97438 * 24 23 22 47 47 H 1.08000 * 119.99808 * 180.25198 * 25 24 23 48 48 H 1.07995 * 119.99931 * 179.78970 * 26 25 24 49 49 H 1.08002 * 119.99864 * 180.02562 * 27 26 25 50 50 H 1.08000 * 120.00128 * 179.97438 * 28 27 26 51 51 H 1.09008 * 109.91264 * 265.97244 * 29 21 20 52 52 H 1.08991 * 110.08766 * 144.77171 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6014 1.9830 -0.8389 5 6 3.5413 1.4446 -0.1309 6 1 4.1502 1.8879 0.6431 7 6 4.1374 0.8805 -1.2388 8 7 3.3960 0.3403 -2.1811 9 14 5.9981 0.8899 -1.4047 10 1 6.5564 -0.3394 -0.7863 11 1 6.3666 0.9320 -2.8426 12 1 6.5503 2.0846 -0.7170 13 7 1.6572 2.0972 1.2581 14 6 1.3332 3.5129 1.0374 15 1 0.8722 3.6317 0.0569 16 6 2.6151 4.3457 1.1026 17 6 0.3609 3.9882 2.1190 18 1 0.8218 3.9068 3.1034 19 6 -0.9455 3.1633 2.0660 20 6 -2.0383 4.2267 2.3407 21 7 -1.5322 5.4264 1.6261 22 6 -2.1566 6.6507 2.1449 23 6 -3.5912 6.7155 1.6878 24 6 -3.9095 7.3407 0.4968 25 6 -5.2250 7.3962 0.0754 26 6 -6.2231 6.8349 0.8497 27 6 -5.9052 6.2139 2.0431 28 6 -4.5894 6.1547 2.4625 29 6 -0.0701 5.4417 1.8490 30 1 -0.3634 0.5521 0.8667 31 1 -0.3633 0.4745 -0.9115 32 1 -0.3633 -1.0268 0.0448 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8154 -0.0563 -2.9607 36 1 0.8878 1.6144 1.6975 37 1 2.3746 5.3962 0.9393 38 1 3.0760 4.2270 2.0831 39 1 3.3078 4.0072 0.3321 40 1 -1.0805 2.7172 1.0807 41 1 -0.9495 2.3969 2.8412 42 1 -2.1238 4.4231 3.4095 43 1 -2.9977 3.9110 1.9309 44 1 -2.1224 6.6424 3.2343 45 1 -1.6166 7.5205 1.7711 46 1 -3.1303 7.7831 -0.1060 47 1 -5.4732 7.8811 -0.8571 48 1 -7.2511 6.8813 0.5221 49 1 -6.6850 5.7749 2.6479 50 1 -4.3412 5.6698 3.3951 51 1 0.1676 6.0656 2.7106 52 1 0.4395 5.8217 0.9637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289068346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:46 Heat of formation + Delta-G solvation = 20.504784 kcal Electronic energy + Delta-G solvation = -26975.275297 eV Core-core repulsion = 23552.796488 eV Total energy + Delta-G solvation = -3422.478809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.87711 -38.80891 -36.54530 -34.06240 -32.33936 -31.54841 -31.05791 -30.01206 -29.17159 -27.22932 -26.48879 -25.37980 -22.84983 -22.76711 -21.72860 -21.56440 -20.68350 -19.56700 -19.15480 -17.02182 -16.26511 -15.98945 -15.93314 -15.37009 -15.19691 -14.69764 -14.26086 -13.99485 -13.75908 -13.55584 -13.45549 -13.11888 -12.90545 -12.74366 -12.53599 -12.40910 -12.13900 -11.87492 -11.80209 -11.53875 -11.30913 -11.16018 -11.05032 -10.97623 -10.90942 -10.84815 -10.68178 -10.57422 -10.44479 -10.10278 -9.78866 -9.59399 -9.34429 -9.06948 -9.00236 -8.93866 -8.40795 -8.26714 -7.14415 -5.89898 -3.92605 1.17654 1.25485 3.35951 3.42441 3.46265 3.54922 4.14201 4.49046 4.54510 4.66935 4.73867 4.83456 4.87281 4.97112 4.99563 5.15078 5.28727 5.34026 5.37708 5.42747 5.48559 5.53228 5.57982 5.72991 5.82705 5.85124 5.88473 5.97708 6.03365 6.09491 6.15307 6.20298 6.24738 6.28563 6.34710 6.35097 6.41355 6.45211 6.49121 6.59836 6.81882 6.84059 6.87790 6.95859 7.00534 7.10357 7.16256 7.27129 7.56273 7.84108 8.00752 8.42015 8.51890 8.84105 9.15399 9.71516 11.15412 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002688 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.022699 B =10413.464819 C =10712.015116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.220 3.780 4 H 0.007 0.993 5 C -0.484 4.484 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.105 3.895 15 H 0.038 0.962 16 C -0.137 4.137 17 C -0.098 4.098 18 H 0.077 0.923 19 C -0.123 4.123 20 C 0.038 3.962 21 N -0.510 5.510 22 C 0.084 3.916 23 C -0.071 4.071 24 C -0.099 4.099 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.114 4.114 29 C 0.043 3.957 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.099 0.901 34 H 0.038 0.962 35 H 0.258 0.742 36 H 0.318 0.682 37 H 0.036 0.964 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.041 0.959 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.566 12.581 8.869 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.112 3.888 4 H 0.024 0.976 5 C -0.523 4.523 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.006 4.006 15 H 0.056 0.944 16 C -0.195 4.195 17 C -0.118 4.118 18 H 0.095 0.905 19 C -0.161 4.161 20 C -0.089 4.089 21 N -0.234 5.234 22 C -0.044 4.044 23 C -0.072 4.072 24 C -0.118 4.118 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.132 4.132 29 C -0.085 4.085 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.059 0.941 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.986 12.612 8.322 21.997 hybrid contribution 0.263 -0.121 0.226 0.367 sum -15.723 12.491 8.548 21.825 Atomic orbital electron populations 1.21903 0.99647 0.99401 0.99804 1.21863 0.91203 1.00877 1.02984 1.19219 0.95387 0.89620 0.84534 0.97574 1.21265 0.91324 1.35604 1.04130 0.91947 1.24973 0.97857 0.95917 0.96019 1.69867 1.34550 1.39743 1.09677 0.86596 0.86180 0.78313 0.76858 1.20924 1.21554 1.20026 1.60796 1.41399 1.00582 1.28792 1.21439 0.93522 0.90634 0.94984 0.94400 1.21835 0.98313 0.96673 1.02697 1.22239 0.95572 0.93466 1.00503 0.90453 1.22606 0.93720 0.97141 1.02591 1.23242 0.98986 0.90847 0.95865 1.64783 1.04111 1.01366 1.53124 1.21212 0.91625 0.94277 0.97303 1.19747 0.94653 0.97715 0.95080 1.21048 0.96335 0.98850 0.95544 1.21158 0.93061 1.00031 0.99715 1.21131 0.99228 0.98730 0.95150 1.21098 0.96297 0.99818 0.96829 1.21044 0.92790 0.99582 0.99810 1.22962 0.87722 0.97044 1.00767 0.94613 0.93859 0.94549 0.88258 0.94300 0.93222 0.86351 0.94479 0.93231 0.90805 0.90477 0.91048 0.94145 0.90357 0.93870 0.90014 0.85978 0.86169 0.86345 0.86288 0.86509 0.94079 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.80 37.16 0.36 -2.55 16 2 C -0.13 -3.07 5.28 -26.73 -0.14 -3.21 16 3 C 0.22 5.40 2.03 -68.86 -0.14 5.26 16 4 H 0.01 0.18 7.24 -51.93 -0.38 -0.19 16 5 C -0.48 -13.19 7.56 -34.44 -0.26 -13.45 16 6 H 0.06 1.73 7.66 -52.49 -0.40 1.33 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -25.64 11.29 55.43 0.63 -25.01 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.14 6.16 -100.95 -0.62 -14.76 16 14 C 0.10 1.90 1.90 -67.71 -0.13 1.77 16 15 H 0.04 0.78 7.33 -51.93 -0.38 0.40 16 16 C -0.14 -2.49 9.07 37.16 0.34 -2.15 16 17 C -0.10 -1.41 2.70 -89.27 -0.24 -1.65 16 18 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.12 -1.65 5.32 -24.87 -0.13 -1.78 16 20 C 0.04 0.46 5.68 -1.90 -0.01 0.45 16 21 N -0.51 -6.35 5.23 -231.90 -1.21 -7.57 16 22 C 0.08 0.87 4.86 -4.98 -0.02 0.85 16 23 C -0.07 -0.76 5.16 -104.62 -0.54 -1.29 16 24 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.11 10.05 -39.59 -0.40 -1.50 16 28 C -0.11 -1.11 8.83 -39.58 -0.35 -1.46 16 29 C 0.04 0.55 5.84 -2.76 -0.02 0.54 16 30 H 0.03 0.62 6.08 -51.93 -0.32 0.30 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.32 6.07 4.91 -39.29 -0.19 5.87 16 37 H 0.04 0.57 6.71 -51.93 -0.35 0.22 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.57 6.84 -51.93 -0.36 1.22 16 40 H 0.08 1.19 7.45 -51.93 -0.39 0.81 16 41 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 42 H 0.04 0.44 7.81 -51.93 -0.41 0.03 16 43 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 44 H 0.04 0.42 7.77 -51.93 -0.40 0.02 16 45 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 51 H 0.04 0.47 7.77 -51.92 -0.40 0.07 16 52 H 0.08 1.17 6.55 -51.93 -0.34 0.83 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -28.64 396.04 -12.44 -41.08 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -9.23 Total: 7.01 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.95 Total: -23.29 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -1.21 Total: -47.34 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.64 -12.44 -41.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289068346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.586 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds