Wall clock time and date at job start Tue Mar 31 2020 11:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 H 1.08997 * 109.47106 * 305.28179 * 3 2 1 5 5 C 1.50704 * 109.47062 * 185.28430 * 3 2 1 6 6 H 1.07994 * 120.00016 * 239.99938 * 5 3 2 7 7 C 1.37885 * 119.99557 * 59.99941 * 5 3 2 8 8 N 1.31506 * 120.00383 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99502 * 179.72366 * 7 5 3 10 10 H 1.48504 * 109.47082 * 89.99889 * 9 7 5 11 11 H 1.48494 * 109.46879 * 210.00121 * 9 7 5 12 12 H 1.48500 * 109.47202 * 330.00124 * 9 7 5 13 13 N 1.46894 * 109.46917 * 65.28652 * 3 2 1 14 14 C 1.46906 * 110.99513 * 215.60298 * 13 3 2 15 15 H 1.08995 * 109.47346 * 33.82529 * 14 13 3 16 16 C 1.53009 * 109.46943 * 273.82649 * 14 13 3 17 17 C 1.52999 * 109.47243 * 153.82905 * 14 13 3 18 18 H 1.09000 * 110.27434 * 61.91272 * 17 14 13 19 19 C 1.54597 * 110.30853 * 299.72294 * 17 14 13 20 20 C 1.54929 * 102.92585 * 219.12719 * 19 17 14 21 21 N 1.48529 * 103.22730 * 37.40916 * 20 19 17 22 22 C 1.46895 * 111.00548 * 200.28137 * 21 20 19 23 23 C 1.50707 * 109.47161 * 287.39895 * 22 21 20 24 24 C 1.38231 * 120.00116 * 269.72683 * 23 22 21 25 25 C 1.38239 * 119.99715 * 179.78649 * 24 23 22 26 26 C 1.38234 * 120.00279 * 0.46052 * 25 24 23 27 27 C 1.38235 * 119.99637 * 359.77284 * 26 25 24 28 28 C 1.38231 * 120.00371 * 0.02562 * 27 26 25 29 29 C 1.47900 * 105.82360 * 320.80088 * 21 20 19 30 30 H 1.08997 * 109.47509 * 302.49830 * 1 2 3 31 31 H 1.08997 * 109.47138 * 62.50279 * 1 2 3 32 32 H 1.09007 * 109.46657 * 182.50063 * 1 2 3 33 33 H 1.09006 * 109.47226 * 239.99947 * 2 1 3 34 34 H 1.08997 * 109.47399 * 119.99865 * 2 1 3 35 35 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.00898 * 111.00345 * 339.54905 * 13 3 2 37 37 H 1.08997 * 109.46707 * 180.02562 * 16 14 13 38 38 H 1.08995 * 109.47002 * 300.00090 * 16 14 13 39 39 H 1.08996 * 109.47094 * 60.00244 * 16 14 13 40 40 H 1.09004 * 110.72615 * 337.48862 * 19 17 14 41 41 H 1.09001 * 110.72430 * 100.76203 * 19 17 14 42 42 H 1.09007 * 110.66383 * 278.98113 * 20 19 17 43 43 H 1.09000 * 110.81586 * 155.91905 * 20 19 17 44 44 H 1.08997 * 109.47015 * 47.39704 * 22 21 20 45 45 H 1.08997 * 109.47713 * 167.40045 * 22 21 20 46 46 H 1.08001 * 120.00190 * 359.97438 * 24 23 22 47 47 H 1.08000 * 119.99808 * 180.25198 * 25 24 23 48 48 H 1.07995 * 119.99931 * 179.78970 * 26 25 24 49 49 H 1.08002 * 119.99864 * 180.02562 * 27 26 25 50 50 H 1.08000 * 120.00128 * 179.97438 * 28 27 26 51 51 H 1.09008 * 109.91264 * 265.97244 * 29 21 20 52 52 H 1.08991 * 110.08766 * 144.77171 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6014 1.9830 -0.8389 5 6 3.5413 1.4446 -0.1309 6 1 4.1502 1.8879 0.6431 7 6 4.1374 0.8805 -1.2388 8 7 3.3960 0.3403 -2.1811 9 14 5.9981 0.8899 -1.4047 10 1 6.5564 -0.3394 -0.7863 11 1 6.3666 0.9320 -2.8426 12 1 6.5503 2.0846 -0.7170 13 7 1.6572 2.0972 1.2581 14 6 1.3332 3.5129 1.0374 15 1 0.8722 3.6317 0.0569 16 6 2.6151 4.3457 1.1026 17 6 0.3609 3.9882 2.1190 18 1 0.8218 3.9068 3.1034 19 6 -0.9455 3.1633 2.0660 20 6 -2.0383 4.2267 2.3407 21 7 -1.5322 5.4264 1.6261 22 6 -2.1566 6.6507 2.1449 23 6 -3.5912 6.7155 1.6878 24 6 -3.9095 7.3407 0.4968 25 6 -5.2250 7.3962 0.0754 26 6 -6.2231 6.8349 0.8497 27 6 -5.9052 6.2139 2.0431 28 6 -4.5894 6.1547 2.4625 29 6 -0.0701 5.4417 1.8490 30 1 -0.3634 0.5521 0.8667 31 1 -0.3633 0.4745 -0.9115 32 1 -0.3633 -1.0268 0.0448 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8154 -0.0563 -2.9607 36 1 0.8878 1.6144 1.6975 37 1 2.3746 5.3962 0.9393 38 1 3.0760 4.2270 2.0831 39 1 3.3078 4.0072 0.3321 40 1 -1.0805 2.7172 1.0807 41 1 -0.9495 2.3969 2.8412 42 1 -2.1238 4.4231 3.4095 43 1 -2.9977 3.9110 1.9309 44 1 -2.1224 6.6424 3.2343 45 1 -1.6166 7.5205 1.7711 46 1 -3.1303 7.7831 -0.1060 47 1 -5.4732 7.8811 -0.8571 48 1 -7.2511 6.8813 0.5221 49 1 -6.6850 5.7749 2.6479 50 1 -4.3412 5.6698 3.3951 51 1 0.1676 6.0656 2.7106 52 1 0.4395 5.8217 0.9637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289068346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:45 Heat of formation + Delta-G solvation = 4.857963 kcal Electronic energy + Delta-G solvation = -26975.953794 eV Core-core repulsion = 23552.796488 eV Total energy + Delta-G solvation = -3423.157306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79849 -39.76158 -38.08499 -35.52979 -33.83575 -33.13178 -31.74714 -30.96341 -30.64535 -28.51944 -28.33388 -26.37292 -24.68667 -23.48836 -23.02457 -22.46028 -21.55349 -21.40328 -20.53920 -18.31237 -17.76193 -17.18256 -17.00264 -16.59113 -16.21513 -16.03932 -15.55517 -15.39327 -15.03909 -14.72186 -14.59803 -14.23779 -14.11126 -13.98510 -13.77642 -13.69500 -13.39409 -13.13494 -13.01603 -12.92097 -12.79026 -12.70416 -12.50968 -12.39372 -12.24364 -12.16340 -11.92537 -11.76216 -11.73938 -11.61568 -11.53976 -11.43967 -10.97701 -10.94247 -10.37707 -9.77068 -9.68284 -9.29197 -8.94408 -8.01758 -6.11956 0.46712 0.55366 1.41749 1.42485 1.52613 2.46230 2.79959 3.22413 3.27626 3.51068 3.68429 3.75684 3.95340 3.98953 4.13397 4.20823 4.30567 4.34871 4.36728 4.47268 4.52184 4.53770 4.57342 4.58695 4.65599 4.70508 4.73631 4.74319 4.80341 4.85727 4.91871 4.99353 5.07012 5.10300 5.15861 5.18350 5.21430 5.23013 5.29014 5.34347 5.41357 5.59106 5.60287 5.66358 5.66829 5.73766 5.80256 5.94926 5.98070 6.09432 6.18377 6.42546 6.64426 7.01857 7.08249 7.56187 9.01243 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002688 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.022699 B =10413.464819 C =10712.015116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.229 3.771 4 H -0.033 1.033 5 C -0.496 4.496 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.682 5.682 14 C 0.107 3.893 15 H 0.009 0.991 16 C -0.131 4.131 17 C -0.089 4.089 18 H 0.087 0.913 19 C -0.122 4.122 20 C 0.047 3.953 21 N -0.527 5.527 22 C 0.087 3.913 23 C -0.086 4.086 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.122 4.122 29 C 0.049 3.951 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.258 0.742 36 H 0.328 0.672 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.122 0.878 47 H 0.135 0.865 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.128 0.872 51 H 0.061 0.939 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.763 13.267 10.781 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.121 3.879 4 H -0.015 1.015 5 C -0.535 4.535 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.314 5.314 14 C -0.003 4.003 15 H 0.027 0.973 16 C -0.188 4.188 17 C -0.109 4.109 18 H 0.105 0.895 19 C -0.160 4.160 20 C -0.080 4.080 21 N -0.251 5.251 22 C -0.040 4.040 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.150 4.150 26 C -0.148 4.148 27 C -0.147 4.147 28 C -0.140 4.140 29 C -0.079 4.079 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.140 0.860 47 H 0.153 0.847 48 H 0.157 0.843 49 H 0.157 0.843 50 H 0.146 0.854 51 H 0.079 0.921 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.194 13.306 10.251 24.036 hybrid contribution 0.584 -0.293 -0.386 0.759 sum -16.610 13.013 9.865 23.292 Atomic orbital electron populations 1.21758 0.96436 1.01109 1.00230 1.21691 0.94093 0.99526 1.01199 1.18940 0.93986 0.90177 0.84827 1.01516 1.21509 0.92781 1.35291 1.03944 0.92931 1.25688 1.01967 0.95762 0.95837 1.70006 1.36055 1.40364 1.10018 0.85655 0.81316 0.78428 0.76795 1.20310 1.21294 1.19612 1.60694 1.42179 1.01872 1.26677 1.21425 0.94442 0.89248 0.95207 0.97296 1.21752 0.97379 0.98206 1.01511 1.22114 0.94959 0.94728 0.99057 0.89489 1.22575 0.93842 0.97868 1.01704 1.23165 0.98057 0.89910 0.96866 1.64736 1.03817 1.02430 1.54099 1.21214 0.91547 0.93378 0.97897 1.19847 0.94897 0.98428 0.95473 1.21215 0.96971 0.99497 0.95912 1.21420 0.92913 1.00157 1.00482 1.21455 1.00194 0.98135 0.95049 1.21416 0.96642 0.99522 0.97088 1.21242 0.93014 0.99563 1.00204 1.22849 0.88148 0.95957 1.00991 0.92466 0.94971 0.92308 0.91529 0.94439 0.93327 0.85215 0.91763 0.92616 0.94718 0.92898 0.89659 0.92240 0.90554 0.92694 0.89703 0.86028 0.84745 0.84314 0.84287 0.85395 0.92053 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.80 71.98 0.71 -4.59 16 2 C -0.13 -6.05 5.28 30.60 0.16 -5.88 16 3 C 0.23 11.62 2.03 44.17 0.09 11.71 16 4 H -0.03 -1.89 7.24 -2.39 -0.02 -1.91 16 5 C -0.50 -27.80 7.56 25.60 0.19 -27.60 16 6 H 0.05 2.98 7.66 -2.91 -0.02 2.96 16 7 C 0.00 0.27 5.29 84.66 0.45 0.72 16 8 N -0.92 -54.30 11.29 21.45 0.24 -54.06 16 9 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.68 -28.43 6.16 -473.29 -2.91 -31.34 16 14 C 0.11 3.93 1.90 44.92 0.09 4.01 16 15 H 0.01 0.39 7.33 -2.39 -0.02 0.37 16 16 C -0.13 -4.75 9.07 71.99 0.65 -4.10 16 17 C -0.09 -2.43 2.70 -9.92 -0.03 -2.46 16 18 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 19 C -0.12 -3.09 5.32 31.80 0.17 -2.92 16 20 C 0.05 1.03 5.68 86.65 0.49 1.52 16 21 N -0.53 -12.28 5.23 -887.61 -4.64 -16.92 16 22 C 0.09 1.66 4.86 85.56 0.42 2.07 16 23 C -0.09 -1.69 5.16 -19.86 -0.10 -1.80 16 24 C -0.12 -2.34 9.70 22.27 0.22 -2.12 16 25 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 26 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 27 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 28 C -0.12 -2.14 8.83 22.27 0.20 -1.94 16 29 C 0.05 1.17 5.84 86.45 0.51 1.67 16 30 H 0.06 1.93 6.08 -2.39 -0.01 1.91 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.07 3.65 5.95 -2.38 -0.01 3.64 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.33 12.30 4.91 -89.70 -0.44 11.86 16 37 H 0.06 1.94 6.71 -2.39 -0.02 1.93 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.51 6.84 -2.39 -0.02 1.49 16 40 H 0.05 1.61 7.45 -2.39 -0.02 1.59 16 41 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 42 H 0.06 1.08 7.81 -2.38 -0.02 1.06 16 43 H 0.08 1.70 7.84 -2.39 -0.02 1.68 16 44 H 0.05 0.91 7.77 -2.39 -0.02 0.90 16 45 H 0.08 1.53 8.02 -2.39 -0.02 1.51 16 46 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 47 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 50 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 51 H 0.06 1.24 7.77 -2.38 -0.02 1.22 16 52 H 0.07 1.92 6.55 -2.39 -0.02 1.90 16 Total: -1.00 -63.53 396.04 0.01 -63.52 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.43 Total: 29.23 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 4.87 Total: -37.48 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -7.32 Total: -102.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.53 0.01 -63.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289068346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.374 kcal (2) G-P(sol) polarization free energy of solvation -63.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds