Wall clock time and date at job start Tue Mar 31 2020 11:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47086 * 2 1 4 4 H 1.09007 * 109.46566 * 318.01359 * 3 2 1 5 5 C 1.50695 * 109.47156 * 198.01715 * 3 2 1 6 6 H 1.08006 * 119.99883 * 246.27417 * 5 3 2 7 7 C 1.37877 * 120.00320 * 66.27020 * 5 3 2 8 8 N 1.31514 * 120.00537 * 193.54469 * 7 5 3 9 9 Si 1.86803 * 119.99997 * 13.53891 * 7 5 3 10 10 H 1.48507 * 109.46777 * 84.67817 * 9 7 5 11 11 H 1.48492 * 109.47461 * 204.67843 * 9 7 5 12 12 H 1.48499 * 109.47382 * 324.68311 * 9 7 5 13 13 N 1.46896 * 109.47445 * 78.01174 * 3 2 1 14 14 C 1.46909 * 110.99460 * 50.37587 * 13 3 2 15 15 C 1.46895 * 111.00260 * 286.42773 * 13 3 2 16 16 C 1.53126 * 109.52142 * 316.85054 * 15 13 3 17 17 C 1.53045 * 109.27548 * 182.50624 * 16 15 13 18 18 N 1.46840 * 109.57534 * 59.08291 * 17 16 15 19 19 C 1.46909 * 111.00055 * 174.19235 * 18 17 16 20 20 C 1.50695 * 109.46969 * 314.21247 * 19 18 17 21 21 C 1.38236 * 119.99951 * 269.72607 * 20 19 18 22 22 C 1.38233 * 120.00032 * 179.79011 * 21 20 19 23 23 C 1.38234 * 120.00188 * 0.43853 * 22 21 20 24 24 C 1.38234 * 119.99805 * 359.81135 * 23 22 21 25 25 C 1.38230 * 120.00106 * 359.97438 * 24 23 22 26 26 C 1.46849 * 111.20043 * 298.28856 * 18 17 16 27 27 C 1.53041 * 109.52065 * 61.74238 * 26 18 17 28 28 H 1.09001 * 109.46586 * 170.27732 * 1 2 3 29 29 H 1.08998 * 109.46950 * 50.27553 * 1 2 3 30 30 H 1.09000 * 109.47045 * 290.27192 * 1 2 3 31 31 H 1.08999 * 109.47419 * 119.99610 * 2 1 3 32 32 H 1.09000 * 109.47123 * 239.99610 * 2 1 3 33 33 H 0.96997 * 120.00985 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46849 * 60.00259 * 14 13 3 35 35 H 1.09003 * 109.46537 * 179.97438 * 14 13 3 36 36 H 1.08990 * 109.47198 * 300.00095 * 14 13 3 37 37 H 1.09004 * 109.52605 * 76.97561 * 15 13 3 38 38 H 1.08997 * 109.50315 * 302.38264 * 16 15 13 39 39 H 1.09005 * 109.50267 * 62.50168 * 16 15 13 40 40 H 1.09004 * 109.40795 * 299.06228 * 17 16 15 41 41 H 1.08998 * 109.45279 * 179.12559 * 17 16 15 42 42 H 1.09000 * 109.46808 * 74.21249 * 19 18 17 43 43 H 1.08996 * 109.47213 * 194.20948 * 19 18 17 44 44 H 1.08003 * 119.99734 * 359.97438 * 21 20 19 45 45 H 1.08002 * 120.00056 * 180.27389 * 22 21 20 46 46 H 1.07996 * 120.00034 * 179.83818 * 23 22 21 47 47 H 1.07995 * 120.00242 * 180.02562 * 24 23 22 48 48 H 1.07997 * 120.00703 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.46375 * 301.72899 * 26 18 17 50 50 H 1.08998 * 109.45450 * 181.75372 * 26 18 17 51 51 H 1.09006 * 109.49832 * 180.87957 * 27 26 18 52 52 H 1.08999 * 109.49989 * 60.76508 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4409 2.0397 -0.6875 5 6 3.4813 1.4658 -0.4394 6 1 4.2533 1.7601 0.2562 7 6 3.8145 1.1112 -1.7295 8 7 5.0693 0.8723 -2.0426 9 14 2.4837 0.9700 -3.0327 10 1 2.2164 2.3100 -3.6144 11 1 2.9359 0.0467 -4.1041 12 1 1.2407 0.4414 -2.4157 13 7 1.9321 2.0001 1.3547 14 6 2.5357 1.0982 2.3448 15 6 0.5331 2.2931 1.6935 16 6 -0.1545 2.9583 0.4979 17 6 -1.5928 3.3177 0.8778 18 7 -1.5845 4.2273 2.0305 19 6 -2.9407 4.7018 2.3365 20 6 -3.6257 5.1213 1.0615 21 6 -3.5240 6.4271 0.6196 22 6 -4.1487 6.8109 -0.5523 23 6 -4.8827 5.8911 -1.2776 24 6 -4.9888 4.5865 -0.8329 25 6 -4.3604 4.2016 0.3366 26 6 -0.9721 3.5918 3.2042 27 6 0.4852 3.2420 2.8942 28 1 -0.3632 -1.0129 -0.1736 29 1 -0.3633 0.6568 -0.7904 30 1 -0.3633 0.3561 0.9640 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 5.3038 0.6225 -2.9501 34 1 3.5901 0.9536 2.1093 35 1 2.4424 1.5354 3.3390 36 1 2.0229 0.1367 2.3207 37 1 0.0163 1.3659 1.9412 38 1 0.3862 3.8646 0.2252 39 1 -0.1615 2.2699 -0.3472 40 1 -2.1370 2.4092 1.1359 41 1 -2.0801 3.8056 0.0337 42 1 -3.5088 3.8994 2.8072 43 1 -2.8835 5.5528 3.0152 44 1 -2.9539 7.1468 1.1883 45 1 -4.0655 7.8301 -0.8999 46 1 -5.3730 6.1915 -2.1917 47 1 -5.5619 3.8677 -1.3997 48 1 -4.4435 3.1825 0.6843 49 1 -1.5191 2.6820 3.4514 50 1 -1.0088 4.2788 4.0496 51 1 0.9349 2.7562 3.7602 52 1 1.0362 4.1530 2.6604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309859776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:07 Heat of formation + Delta-G solvation = 56.526635 kcal Electronic energy + Delta-G solvation = -28088.033827 eV Core-core repulsion = 24667.117042 eV Total energy + Delta-G solvation = -3420.916785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.07745 -39.04710 -37.09685 -33.64039 -32.23045 -31.61638 -31.08291 -30.77865 -29.87466 -27.50803 -26.41714 -24.55459 -22.99148 -22.82359 -22.54469 -21.80852 -20.83914 -19.77053 -18.64155 -16.98165 -16.86805 -15.92553 -15.65255 -15.48589 -15.30547 -14.57317 -14.46303 -14.21983 -14.07538 -13.60746 -13.52125 -13.34658 -12.92172 -12.76662 -12.63188 -12.42875 -12.39328 -12.14920 -11.97779 -11.62700 -11.53334 -11.24455 -11.09786 -11.06203 -10.90479 -10.84892 -10.69216 -10.61800 -10.44826 -10.12125 -9.74013 -9.55324 -9.28388 -9.06908 -9.03170 -8.91454 -8.32791 -8.22407 -7.15532 -6.03059 -3.95872 1.17707 1.27240 3.31788 3.39798 3.42571 3.55504 4.10826 4.46856 4.57051 4.68489 4.76130 4.86035 4.95879 5.09344 5.13316 5.15512 5.25094 5.35128 5.37999 5.41137 5.52441 5.56311 5.63851 5.67805 5.75907 5.84521 5.85150 5.90866 5.92550 5.99371 6.06070 6.10787 6.19064 6.22798 6.27415 6.32513 6.37351 6.42415 6.47809 6.54254 6.58958 6.64336 6.82339 6.83226 6.85064 6.90003 7.04264 7.13323 7.17380 7.34129 7.72666 8.05391 8.21411 8.74420 9.09136 9.62751 11.10149 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.004025 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.035837 B = 6955.110973 C = 8046.375673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.162 4.162 3 C 0.184 3.816 4 H 0.044 0.956 5 C -0.501 4.501 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.856 3.144 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.253 1.253 13 N -0.517 5.517 14 C 0.030 3.970 15 C 0.078 3.922 16 C -0.124 4.124 17 C 0.056 3.944 18 N -0.529 5.529 19 C 0.093 3.907 20 C -0.079 4.079 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.060 3.940 27 C -0.106 4.106 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.262 0.738 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.020 0.980 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.026 0.974 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.028 0.972 50 H 0.072 0.928 51 H 0.062 0.938 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.355 7.025 7.697 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.201 4.201 3 C 0.076 3.924 4 H 0.061 0.939 5 C -0.539 4.539 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.683 3.317 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.177 1.177 13 N -0.240 5.240 14 C -0.118 4.118 15 C -0.031 4.031 16 C -0.161 4.161 17 C -0.072 4.072 18 N -0.253 5.253 19 C -0.034 4.034 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.068 4.068 27 C -0.145 4.145 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.046 0.954 50 H 0.090 0.910 51 H 0.081 0.919 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.654 7.812 7.449 22.423 hybrid contribution -1.524 -1.671 -0.764 2.387 sum -21.178 6.141 6.685 23.042 Atomic orbital electron populations 1.22368 0.98731 0.99958 1.01116 1.22701 0.92942 1.02472 1.01998 1.19828 0.97698 0.88611 0.86224 0.93871 1.20925 0.90902 1.44660 0.97398 0.90368 1.24855 0.94934 0.94682 0.98320 1.69941 1.17287 1.46666 1.19642 0.87330 0.83962 0.78282 0.82106 1.20406 1.21718 1.17690 1.62241 1.13156 1.45158 1.03438 1.22355 1.01191 0.93908 0.94387 1.21854 0.90556 0.96093 0.94600 1.22041 0.93814 1.01916 0.98358 1.22243 0.97832 0.93610 0.93508 1.62094 1.17652 1.39721 1.05868 1.21079 0.88642 0.99779 0.93937 1.19772 0.97437 0.93914 0.96846 1.21045 0.98560 0.95709 0.96441 1.21164 0.97789 0.99641 0.95342 1.21148 0.99452 0.93668 0.99778 1.21107 1.00010 0.96321 0.96558 1.21088 0.97615 0.99077 0.95474 1.22098 0.95816 0.96685 0.92208 1.21623 0.94345 1.00666 0.97824 0.94573 0.93096 0.92579 0.92204 0.92054 0.92809 0.90575 0.93578 0.96185 0.94375 0.90315 0.90110 0.95618 0.90335 0.94300 0.89970 0.85830 0.86110 0.86276 0.86207 0.86453 0.95423 0.90982 0.91916 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.20 37.16 0.30 -2.65 16 2 C -0.16 -3.45 4.31 -26.73 -0.12 -3.56 16 3 C 0.18 4.22 1.31 -68.87 -0.09 4.13 16 4 H 0.04 1.03 3.98 -51.93 -0.21 0.82 16 5 C -0.50 -13.89 8.54 -34.44 -0.29 -14.18 16 6 H 0.08 2.39 7.37 -52.48 -0.39 2.00 16 7 C 0.07 2.10 5.25 -17.82 -0.09 2.01 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 9 Si 0.86 21.11 25.79 -169.99 -4.38 16.73 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.25 -5.79 5.11 56.52 0.29 -5.50 16 13 N -0.52 -10.49 4.54 -228.15 -1.04 -11.52 16 14 C 0.03 0.56 8.64 60.07 0.52 1.08 16 15 C 0.08 1.30 1.29 -67.59 -0.09 1.21 16 16 C -0.12 -2.08 4.02 -26.64 -0.11 -2.18 16 17 C 0.06 0.78 4.57 -3.83 -0.02 0.76 16 18 N -0.53 -6.72 4.80 -236.11 -1.13 -7.85 16 19 C 0.09 0.98 5.43 -4.97 -0.03 0.95 16 20 C -0.08 -0.86 4.12 -104.62 -0.43 -1.29 16 21 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 25 C -0.11 -1.20 7.79 -39.58 -0.31 -1.50 16 26 C 0.06 0.73 5.42 -3.83 -0.02 0.71 16 27 C -0.11 -1.54 5.40 -26.65 -0.14 -1.68 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.92 5.91 -51.93 -0.31 0.61 16 30 H 0.06 0.93 4.65 -51.93 -0.24 0.69 16 31 H 0.06 1.25 5.32 -51.93 -0.28 0.97 16 32 H 0.06 1.42 5.32 -51.93 -0.28 1.15 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 1.60 6.99 -51.93 -0.36 1.23 16 35 H 0.05 0.75 6.68 -51.93 -0.35 0.40 16 36 H 0.02 0.36 5.82 -51.93 -0.30 0.06 16 37 H 0.04 0.65 5.18 -51.93 -0.27 0.38 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.46 3.54 -51.93 -0.18 1.28 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 1.11 5.64 -51.93 -0.29 0.82 16 42 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 43 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 51 H 0.06 0.85 6.85 -51.93 -0.36 0.50 16 52 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -29.92 369.34 -11.25 -41.17 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.54 Total: 4.83 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -2.49 Total: -22.35 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -1.40 Total: -45.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.38 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.92 -11.25 -41.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309859776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.692 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds