Wall clock time and date at job start Tue Mar 31 2020 11:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47086 * 2 1 4 4 H 1.09007 * 109.46566 * 318.01359 * 3 2 1 5 5 C 1.50695 * 109.47156 * 198.01715 * 3 2 1 6 6 H 1.08006 * 119.99883 * 246.27417 * 5 3 2 7 7 C 1.37877 * 120.00320 * 66.27020 * 5 3 2 8 8 N 1.31514 * 120.00537 * 193.54469 * 7 5 3 9 9 Si 1.86803 * 119.99997 * 13.53891 * 7 5 3 10 10 H 1.48507 * 109.46777 * 84.67817 * 9 7 5 11 11 H 1.48492 * 109.47461 * 204.67843 * 9 7 5 12 12 H 1.48499 * 109.47382 * 324.68311 * 9 7 5 13 13 N 1.46896 * 109.47445 * 78.01174 * 3 2 1 14 14 C 1.46909 * 110.99460 * 50.37587 * 13 3 2 15 15 C 1.46895 * 111.00260 * 286.42773 * 13 3 2 16 16 C 1.53126 * 109.52142 * 316.85054 * 15 13 3 17 17 C 1.53045 * 109.27548 * 182.50624 * 16 15 13 18 18 N 1.46840 * 109.57534 * 59.08291 * 17 16 15 19 19 C 1.46909 * 111.00055 * 174.19235 * 18 17 16 20 20 C 1.50695 * 109.46969 * 314.21247 * 19 18 17 21 21 C 1.38236 * 119.99951 * 269.72607 * 20 19 18 22 22 C 1.38233 * 120.00032 * 179.79011 * 21 20 19 23 23 C 1.38234 * 120.00188 * 0.43853 * 22 21 20 24 24 C 1.38234 * 119.99805 * 359.81135 * 23 22 21 25 25 C 1.38230 * 120.00106 * 359.97438 * 24 23 22 26 26 C 1.46849 * 111.20043 * 298.28856 * 18 17 16 27 27 C 1.53041 * 109.52065 * 61.74238 * 26 18 17 28 28 H 1.09001 * 109.46586 * 170.27732 * 1 2 3 29 29 H 1.08998 * 109.46950 * 50.27553 * 1 2 3 30 30 H 1.09000 * 109.47045 * 290.27192 * 1 2 3 31 31 H 1.08999 * 109.47419 * 119.99610 * 2 1 3 32 32 H 1.09000 * 109.47123 * 239.99610 * 2 1 3 33 33 H 0.96997 * 120.00985 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46849 * 60.00259 * 14 13 3 35 35 H 1.09003 * 109.46537 * 179.97438 * 14 13 3 36 36 H 1.08990 * 109.47198 * 300.00095 * 14 13 3 37 37 H 1.09004 * 109.52605 * 76.97561 * 15 13 3 38 38 H 1.08997 * 109.50315 * 302.38264 * 16 15 13 39 39 H 1.09005 * 109.50267 * 62.50168 * 16 15 13 40 40 H 1.09004 * 109.40795 * 299.06228 * 17 16 15 41 41 H 1.08998 * 109.45279 * 179.12559 * 17 16 15 42 42 H 1.09000 * 109.46808 * 74.21249 * 19 18 17 43 43 H 1.08996 * 109.47213 * 194.20948 * 19 18 17 44 44 H 1.08003 * 119.99734 * 359.97438 * 21 20 19 45 45 H 1.08002 * 120.00056 * 180.27389 * 22 21 20 46 46 H 1.07996 * 120.00034 * 179.83818 * 23 22 21 47 47 H 1.07995 * 120.00242 * 180.02562 * 24 23 22 48 48 H 1.07997 * 120.00703 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.46375 * 301.72899 * 26 18 17 50 50 H 1.08998 * 109.45450 * 181.75372 * 26 18 17 51 51 H 1.09006 * 109.49832 * 180.87957 * 27 26 18 52 52 H 1.08999 * 109.49989 * 60.76508 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4409 2.0397 -0.6875 5 6 3.4813 1.4658 -0.4394 6 1 4.2533 1.7601 0.2562 7 6 3.8145 1.1112 -1.7295 8 7 5.0693 0.8723 -2.0426 9 14 2.4837 0.9700 -3.0327 10 1 2.2164 2.3100 -3.6144 11 1 2.9359 0.0467 -4.1041 12 1 1.2407 0.4414 -2.4157 13 7 1.9321 2.0001 1.3547 14 6 2.5357 1.0982 2.3448 15 6 0.5331 2.2931 1.6935 16 6 -0.1545 2.9583 0.4979 17 6 -1.5928 3.3177 0.8778 18 7 -1.5845 4.2273 2.0305 19 6 -2.9407 4.7018 2.3365 20 6 -3.6257 5.1213 1.0615 21 6 -3.5240 6.4271 0.6196 22 6 -4.1487 6.8109 -0.5523 23 6 -4.8827 5.8911 -1.2776 24 6 -4.9888 4.5865 -0.8329 25 6 -4.3604 4.2016 0.3366 26 6 -0.9721 3.5918 3.2042 27 6 0.4852 3.2420 2.8942 28 1 -0.3632 -1.0129 -0.1736 29 1 -0.3633 0.6568 -0.7904 30 1 -0.3633 0.3561 0.9640 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 5.3038 0.6225 -2.9501 34 1 3.5901 0.9536 2.1093 35 1 2.4424 1.5354 3.3390 36 1 2.0229 0.1367 2.3207 37 1 0.0163 1.3659 1.9412 38 1 0.3862 3.8646 0.2252 39 1 -0.1615 2.2699 -0.3472 40 1 -2.1370 2.4092 1.1359 41 1 -2.0801 3.8056 0.0337 42 1 -3.5088 3.8994 2.8072 43 1 -2.8835 5.5528 3.0152 44 1 -2.9539 7.1468 1.1883 45 1 -4.0655 7.8301 -0.8999 46 1 -5.3730 6.1915 -2.1917 47 1 -5.5619 3.8677 -1.3997 48 1 -4.4435 3.1825 0.6843 49 1 -1.5191 2.6820 3.4514 50 1 -1.0088 4.2788 4.0496 51 1 0.9349 2.7562 3.7602 52 1 1.0362 4.1530 2.6604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309859776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:05 Heat of formation + Delta-G solvation = 37.874104 kcal Electronic energy + Delta-G solvation = -28088.842662 eV Core-core repulsion = 24667.117042 eV Total energy + Delta-G solvation = -3421.725619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14778 -40.12234 -38.29824 -35.10383 -33.94042 -33.07695 -32.01379 -31.71938 -30.98991 -29.32048 -27.54483 -25.91473 -24.43139 -24.07953 -23.46083 -22.97184 -21.75875 -21.10823 -20.19811 -18.87382 -17.64081 -17.26604 -17.08985 -16.39681 -16.29072 -16.00226 -15.70944 -15.52000 -15.27466 -14.92238 -14.76003 -14.37518 -14.24484 -14.03533 -13.93323 -13.70682 -13.57288 -13.33541 -13.22006 -13.11653 -12.86084 -12.65975 -12.59934 -12.34823 -12.24584 -12.11561 -11.94019 -11.85367 -11.81163 -11.57294 -11.46098 -11.15571 -11.00661 -10.78896 -10.46666 -9.76243 -9.68036 -9.13375 -8.74331 -8.25428 -6.22040 0.44391 0.54531 1.33787 1.37052 1.45051 2.37244 2.77285 3.08298 3.21795 3.30492 3.76103 3.92067 3.99039 4.00067 4.16261 4.19282 4.23589 4.29898 4.36226 4.38504 4.41463 4.48584 4.50870 4.53975 4.64848 4.68626 4.69845 4.72403 4.75683 4.84828 4.89253 4.94314 4.94956 5.03281 5.11655 5.14774 5.15030 5.20498 5.20666 5.21614 5.33252 5.41860 5.56047 5.59438 5.63873 5.66352 5.71465 5.74007 6.13171 6.13962 6.17017 6.23214 6.55555 6.81404 6.85053 7.40824 8.91548 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.004025 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.035837 B = 6955.110973 C = 8046.375673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.160 4.160 3 C 0.192 3.808 4 H 0.041 0.959 5 C -0.503 4.503 6 H 0.032 0.968 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.919 3.081 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.223 1.223 13 N -0.538 5.538 14 C 0.036 3.964 15 C 0.081 3.919 16 C -0.120 4.120 17 C 0.069 3.931 18 N -0.542 5.542 19 C 0.097 3.903 20 C -0.092 4.092 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.124 4.124 26 C 0.066 3.934 27 C -0.101 4.101 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.124 0.876 49 H 0.039 0.961 50 H 0.092 0.908 51 H 0.073 0.927 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.065 6.976 8.479 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.199 4.199 3 C 0.083 3.917 4 H 0.059 0.941 5 C -0.541 4.541 6 H 0.050 0.950 7 C -0.180 4.180 8 N -0.589 5.589 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.145 1.145 13 N -0.261 5.261 14 C -0.112 4.112 15 C -0.027 4.027 16 C -0.158 4.158 17 C -0.059 4.059 18 N -0.267 5.267 19 C -0.030 4.030 20 C -0.092 4.092 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.062 4.062 27 C -0.140 4.140 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.154 0.846 48 H 0.142 0.858 49 H 0.058 0.942 50 H 0.111 0.889 51 H 0.092 0.908 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.393 7.771 8.261 25.997 hybrid contribution -0.290 -1.577 -0.927 1.852 sum -23.682 6.194 7.334 25.554 Atomic orbital electron populations 1.22265 0.95469 1.01409 1.02131 1.22549 0.95776 1.00514 1.01058 1.19581 0.94236 0.89996 0.87847 0.94140 1.21230 0.92778 1.43405 0.96706 0.94977 1.25670 0.97094 0.94589 1.00658 1.70094 1.19776 1.48810 1.20170 0.86317 0.82179 0.78240 0.78999 1.20324 1.21803 1.14546 1.62127 1.16039 1.45425 1.02490 1.22277 0.99094 0.94514 0.95343 1.21924 0.88174 0.96983 0.95612 1.21954 0.95585 1.00314 0.97969 1.22033 0.95453 0.94271 0.94139 1.62036 1.19351 1.39511 1.05776 1.21096 0.87355 1.00404 0.94106 1.19887 0.97919 0.94179 0.97233 1.21242 0.98972 0.95981 0.96977 1.21440 0.97595 1.00627 0.95216 1.21454 0.99284 0.93644 1.00417 1.21390 1.00016 0.96891 0.96596 1.21254 0.97779 0.99431 0.95785 1.22067 0.93884 0.97761 0.92511 1.21573 0.96252 0.99153 0.96980 0.92545 0.93037 0.91014 0.92157 0.94156 0.92855 0.94026 0.90693 0.95251 0.93378 0.93021 0.91383 0.94553 0.90650 0.93226 0.88863 0.85350 0.84581 0.84465 0.84632 0.85754 0.94244 0.88938 0.90838 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 8.20 71.98 0.59 -4.49 16 2 C -0.16 -6.59 4.31 30.60 0.13 -6.46 16 3 C 0.19 8.80 1.31 44.17 0.06 8.86 16 4 H 0.04 1.91 3.98 -2.38 -0.01 1.90 16 5 C -0.50 -29.01 8.54 25.60 0.22 -28.80 16 6 H 0.03 2.09 7.37 -2.91 -0.02 2.07 16 7 C 0.02 0.99 5.25 84.65 0.44 1.43 16 8 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 9 Si 0.92 44.14 25.79 68.60 1.77 45.91 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.22 -9.54 5.11 99.48 0.51 -9.03 16 13 N -0.54 -21.69 4.54 -875.72 -3.97 -25.67 16 14 C 0.04 1.33 8.64 127.69 1.10 2.44 16 15 C 0.08 2.56 1.29 45.00 0.06 2.62 16 16 C -0.12 -3.86 4.02 30.65 0.12 -3.74 16 17 C 0.07 1.75 4.57 86.33 0.39 2.15 16 18 N -0.54 -12.29 4.80 -900.92 -4.33 -16.61 16 19 C 0.10 1.75 5.43 85.55 0.46 2.22 16 20 C -0.09 -1.79 4.12 -19.87 -0.08 -1.87 16 21 C -0.11 -2.18 9.70 22.27 0.22 -1.96 16 22 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 23 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 25 C -0.12 -2.31 7.79 22.27 0.17 -2.13 16 26 C 0.07 1.37 5.42 86.33 0.47 1.84 16 27 C -0.10 -2.70 5.40 30.65 0.17 -2.53 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.68 5.91 -2.39 -0.01 1.67 16 30 H 0.07 2.10 4.65 -2.39 -0.01 2.09 16 31 H 0.06 2.46 5.32 -2.39 -0.01 2.44 16 32 H 0.04 1.82 5.32 -2.39 -0.01 1.80 16 33 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 34 H 0.04 1.81 6.99 -2.39 -0.02 1.79 16 35 H 0.07 2.32 6.68 -2.39 -0.02 2.30 16 36 H 0.03 1.03 5.82 -2.39 -0.01 1.02 16 37 H 0.05 1.46 5.18 -2.39 -0.01 1.45 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.34 3.54 -2.38 -0.01 2.33 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.97 5.64 -2.39 -0.01 1.96 16 42 H 0.05 0.80 8.02 -2.39 -0.02 0.78 16 43 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 44 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 48 H 0.12 2.06 8.06 -2.91 -0.02 2.03 16 49 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 51 H 0.07 1.79 6.85 -2.38 -0.02 1.77 16 52 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -67.52 369.34 -0.33 -67.85 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.70 Total: 24.97 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 5.20 Total: -36.55 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -8.00 Total: -102.18 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.77 Total: 45.91 kcal Total: -67.52 -0.33 -67.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309859776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.722 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds