Wall clock time and date at job start Tue Mar 31 2020 11:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 108.93745 * 2 1 4 4 C 1.53698 * 108.95244 * 241.25577 * 2 1 3 5 5 N 1.48068 * 112.46737 * 197.87983 * 4 2 1 6 6 C 1.46898 * 111.00031 * 192.19984 * 5 4 2 7 7 C 1.52998 * 109.47256 * 193.73209 * 6 5 4 8 8 C 1.52996 * 109.47052 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47157 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99835 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00333 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99691 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00132 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47292 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47026 * 120.00822 * 13 11 9 16 16 H 1.48499 * 109.47466 * 240.00610 * 13 11 9 17 17 C 1.44575 * 113.85303 * 318.31518 * 5 4 2 18 18 C 1.54202 * 108.85001 * 94.22990 * 17 5 4 19 19 N 1.40011 * 112.08801 * 281.18104 * 18 17 5 20 20 C 1.46890 * 111.00321 * 188.09264 * 19 18 17 21 21 C 1.50702 * 109.47198 * 66.04864 * 20 19 18 22 22 C 1.38234 * 119.99895 * 269.72876 * 21 20 19 23 23 C 1.38240 * 120.00061 * 180.34228 * 22 21 20 24 24 C 1.38234 * 119.99689 * 359.90912 * 23 22 21 25 25 C 1.38235 * 120.00205 * 0.04302 * 24 23 22 26 26 C 1.38230 * 119.99899 * 0.02562 * 25 24 23 27 27 C 1.47915 * 114.06097 * 61.80466 * 19 18 17 28 28 H 1.09004 * 109.47422 * 178.74750 * 1 2 3 29 29 H 1.09009 * 109.47489 * 298.74580 * 1 2 3 30 30 H 1.08997 * 109.47410 * 58.74310 * 1 2 3 31 31 H 1.08991 * 108.88515 * 77.10761 * 4 2 1 32 32 H 1.08994 * 108.88358 * 318.64596 * 4 2 1 33 33 H 1.09005 * 109.46868 * 313.73134 * 6 5 4 34 34 H 1.09002 * 109.47403 * 73.73035 * 6 5 4 35 35 H 1.08997 * 109.46852 * 299.99889 * 7 6 5 36 36 H 1.09002 * 109.47056 * 59.99613 * 7 6 5 37 37 H 1.08997 * 109.47494 * 299.99854 * 8 7 6 38 38 H 1.09002 * 109.47214 * 60.00067 * 8 7 6 39 39 H 0.97003 * 120.00003 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.57501 * 334.41888 * 17 5 4 41 41 H 1.09003 * 109.57597 * 214.04475 * 17 5 4 42 42 H 1.09000 * 108.95505 * 160.50885 * 18 17 5 43 43 H 1.09001 * 108.95577 * 41.85882 * 18 17 5 44 44 H 1.09003 * 109.47170 * 306.05095 * 20 19 18 45 45 H 1.09001 * 109.47716 * 186.05147 * 20 19 18 46 46 H 1.08001 * 120.00279 * 0.27436 * 22 21 20 47 47 H 1.07997 * 119.99835 * 179.97438 * 23 22 21 48 48 H 1.07999 * 119.99751 * 180.02562 * 24 23 22 49 49 H 1.08001 * 119.99730 * 180.02562 * 25 24 23 50 50 H 1.08000 * 120.00376 * 179.97438 * 26 25 24 51 51 H 1.09004 * 109.63126 * 39.78607 * 27 19 18 52 52 H 1.09000 * 109.62796 * 160.37651 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8837 1.0310 0.0000 4 6 2.0292 -0.6991 -1.2745 5 7 3.4446 -1.1214 -1.1709 6 6 3.9732 -1.5174 -2.4830 7 6 5.2975 -2.2604 -2.2962 8 6 5.8477 -2.6735 -3.6628 9 6 7.1525 -3.4047 -3.4788 10 1 7.5494 -3.5597 -2.4864 11 6 7.8391 -3.8768 -4.5773 12 7 7.3555 -3.6885 -5.7858 13 14 9.4560 -4.7838 -4.3492 14 1 9.7789 -4.8637 -2.9020 15 1 9.3370 -6.1554 -4.9060 16 1 10.5375 -4.0539 -5.0584 17 6 4.3021 -0.1426 -0.5409 18 6 4.4087 -0.4680 0.9627 19 7 3.2820 -0.0399 1.6751 20 6 3.4875 -0.1857 3.1223 21 6 4.5752 0.7552 3.5726 22 6 5.8921 0.3351 3.5825 23 6 6.8890 1.1959 4.0023 24 6 6.5692 2.4773 4.4103 25 6 5.2524 2.8977 4.3994 26 6 4.2553 2.0365 3.9810 27 6 2.0198 -0.6842 1.2514 28 1 -0.3634 -1.0274 -0.0225 29 1 -0.3634 0.4943 0.9011 30 1 -0.3634 0.5332 -0.8785 31 1 1.9261 -0.0141 -2.1160 32 1 1.4116 -1.5778 -1.4598 33 1 3.2570 -2.1711 -2.9810 34 1 4.1380 -0.6284 -3.0918 35 1 6.0137 -1.6068 -1.7983 36 1 5.1327 -3.1494 -1.6874 37 1 5.1315 -3.3272 -4.1604 38 1 6.0125 -1.7847 -4.2719 39 1 7.8387 -4.0202 -6.5587 40 1 3.8767 0.8526 -0.6699 41 1 5.2929 -0.1797 -0.9938 42 1 5.2927 0.0232 1.3694 43 1 4.5167 -1.5457 1.0849 44 1 3.7791 -1.2118 3.3463 45 1 2.5618 0.0516 3.6465 46 1 6.1420 -0.6659 3.2634 47 1 7.9178 0.8675 4.0105 48 1 7.3481 3.1499 4.7378 49 1 5.0026 3.8991 4.7178 50 1 3.2265 2.3648 3.9728 51 1 2.1984 -1.7397 1.0458 52 1 1.2742 -0.5828 2.0400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323803612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:59 Heat of formation + Delta-G solvation = 23.888309 kcal Electronic energy + Delta-G solvation = -26783.918835 eV Core-core repulsion = 23361.586747 eV Total energy + Delta-G solvation = -3422.332089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.11839 -38.94514 -36.45834 -34.77292 -33.35892 -31.84997 -31.12383 -31.02149 -28.82728 -26.91539 -26.56502 -25.24090 -24.12376 -22.74465 -22.19313 -21.30846 -20.53517 -19.84713 -19.42013 -16.91158 -16.43940 -15.99601 -15.88310 -15.74825 -15.30894 -14.96532 -14.78987 -14.43157 -14.19374 -13.88157 -13.55598 -13.36022 -13.27550 -12.91205 -12.72955 -12.62706 -12.29351 -12.18450 -11.92618 -11.70863 -11.57750 -11.36184 -11.16651 -11.09395 -10.95902 -10.87512 -10.71971 -10.67205 -10.57200 -10.37298 -10.37061 -9.56607 -9.29151 -9.02220 -9.00614 -8.90633 -8.31795 -8.17529 -7.86067 -5.97105 -3.98837 1.20026 1.28562 3.32708 3.40029 3.44562 3.54916 4.08704 4.14742 4.49406 4.62644 4.71164 4.75607 4.88393 4.94289 4.98315 5.08176 5.16650 5.22109 5.36526 5.38793 5.43363 5.45932 5.52742 5.53010 5.63492 5.65056 5.67780 5.70651 5.82210 5.85904 5.87045 5.92180 6.02502 6.05356 6.06089 6.13556 6.23804 6.33204 6.37023 6.38040 6.38758 6.50068 6.77992 6.82703 6.86704 7.09455 7.18989 7.36611 7.54327 7.59821 7.72547 7.87535 8.03886 8.47465 9.08670 9.65029 11.14443 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.003158 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.143041 B = 8863.415180 C =11039.925080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.078 0.922 4 C 0.067 3.933 5 N -0.554 5.554 6 C 0.062 3.938 7 C -0.103 4.103 8 C 0.022 3.978 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.063 3.937 18 C 0.071 3.929 19 N -0.546 5.546 20 C 0.098 3.902 21 C -0.075 4.075 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.100 4.100 27 C 0.076 3.924 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.259 0.741 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.042 0.958 45 H 0.079 0.921 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.053 0.947 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 12.045 20.406 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.061 4.061 5 N -0.279 5.279 6 C -0.065 4.065 7 C -0.141 4.141 8 C -0.016 4.016 9 C -0.555 4.555 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.066 4.066 18 C -0.059 4.059 19 N -0.269 5.269 20 C -0.029 4.029 21 C -0.076 4.076 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.119 4.119 27 C -0.051 4.051 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.071 0.929 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.213 12.070 20.390 26.213 hybrid contribution 1.073 -0.603 -0.492 1.326 sum -10.139 11.467 19.897 25.104 Atomic orbital electron populations 1.21829 0.94787 1.01811 1.01644 1.20996 0.95120 1.00698 0.94210 0.90403 1.22427 0.89336 0.98456 0.95839 1.60806 1.01194 1.42107 1.23746 1.22245 0.98202 0.98405 0.87661 1.21671 0.93079 0.98608 1.00757 1.19074 0.95549 0.96246 0.90727 1.21292 1.05976 1.35482 0.92704 0.92671 1.25029 0.97879 0.96334 0.95313 1.69979 1.39028 1.46830 0.97802 0.86556 0.83840 0.79531 0.78206 1.19732 1.21045 1.21052 1.21928 0.97652 0.93489 0.93561 1.21090 0.92535 0.98414 0.93872 1.59233 1.03755 1.61222 1.02732 1.21007 0.96907 0.96325 0.88614 1.19793 0.94190 0.95090 0.98525 1.21139 0.92509 1.00012 0.99413 1.21148 0.99302 0.94104 0.99289 1.21140 0.96461 0.96227 1.00320 1.21129 0.93117 0.99532 1.00423 1.20982 0.99347 0.93081 0.98461 1.21831 0.89974 0.97169 0.96107 0.92598 0.92560 0.92701 0.95279 0.91336 0.91518 0.95478 0.93464 0.92802 0.96675 0.96866 0.93128 0.93828 0.90133 0.90902 0.95026 0.93976 0.90225 0.86121 0.86109 0.86354 0.86314 0.86185 0.92895 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 2 C -0.09 -0.98 2.25 -91.36 -0.21 -1.19 16 3 H 0.08 0.93 7.22 -51.93 -0.38 0.55 16 4 C 0.07 0.86 4.79 -2.82 -0.01 0.85 16 5 N -0.55 -8.50 3.94 -234.31 -0.92 -9.42 16 6 C 0.06 1.10 4.83 -3.83 -0.02 1.09 16 7 C -0.10 -2.19 5.12 -26.73 -0.14 -2.32 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 13 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.06 0.92 5.15 -4.44 -0.02 0.90 16 18 C 0.07 0.94 4.84 -6.75 -0.03 0.91 16 19 N -0.55 -6.26 4.07 -241.21 -0.98 -7.24 16 20 C 0.10 0.98 5.12 -4.98 -0.03 0.95 16 21 C -0.08 -0.78 4.84 -104.62 -0.51 -1.29 16 22 C -0.11 -1.18 7.89 -39.58 -0.31 -1.49 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 26 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 27 C 0.08 0.82 4.85 -4.37 -0.02 0.80 16 28 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.06 0.43 8.02 -51.92 -0.42 0.01 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.38 8.03 -51.93 -0.42 -0.03 16 32 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 33 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.05 0.99 6.38 -51.93 -0.33 0.66 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.04 0.64 6.93 -51.93 -0.36 0.28 16 41 H 0.08 1.30 5.85 -51.93 -0.30 0.99 16 42 H 0.07 0.96 5.39 -51.93 -0.28 0.68 16 43 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 44 H 0.04 0.43 8.05 -51.93 -0.42 0.01 16 45 H 0.08 0.68 7.65 -51.93 -0.40 0.28 16 46 H 0.12 1.23 7.92 -52.49 -0.42 0.81 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 51 H 0.05 0.66 7.57 -51.93 -0.39 0.27 16 52 H 0.07 0.61 7.11 -51.93 -0.37 0.24 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -30.60 397.34 -12.79 -43.39 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -9.49 Total: -2.12 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -3.09 Total: -20.93 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -1.17 Total: -43.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.60 -12.79 -43.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323803612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.281 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds