Wall clock time and date at job start Tue Mar 31 2020 11:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 108.93745 * 2 1 4 4 C 1.53698 * 108.95244 * 241.25577 * 2 1 3 5 5 N 1.48068 * 112.46737 * 197.87983 * 4 2 1 6 6 C 1.46898 * 111.00031 * 192.19984 * 5 4 2 7 7 C 1.52998 * 109.47256 * 193.73209 * 6 5 4 8 8 C 1.52996 * 109.47052 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47157 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99835 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00333 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99691 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00132 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47292 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47026 * 120.00822 * 13 11 9 16 16 H 1.48499 * 109.47466 * 240.00610 * 13 11 9 17 17 C 1.44575 * 113.85303 * 318.31518 * 5 4 2 18 18 C 1.54202 * 108.85001 * 94.22990 * 17 5 4 19 19 N 1.40011 * 112.08801 * 281.18104 * 18 17 5 20 20 C 1.46890 * 111.00321 * 188.09264 * 19 18 17 21 21 C 1.50702 * 109.47198 * 66.04864 * 20 19 18 22 22 C 1.38234 * 119.99895 * 269.72876 * 21 20 19 23 23 C 1.38240 * 120.00061 * 180.34228 * 22 21 20 24 24 C 1.38234 * 119.99689 * 359.90912 * 23 22 21 25 25 C 1.38235 * 120.00205 * 0.04302 * 24 23 22 26 26 C 1.38230 * 119.99899 * 0.02562 * 25 24 23 27 27 C 1.47915 * 114.06097 * 61.80466 * 19 18 17 28 28 H 1.09004 * 109.47422 * 178.74750 * 1 2 3 29 29 H 1.09009 * 109.47489 * 298.74580 * 1 2 3 30 30 H 1.08997 * 109.47410 * 58.74310 * 1 2 3 31 31 H 1.08991 * 108.88515 * 77.10761 * 4 2 1 32 32 H 1.08994 * 108.88358 * 318.64596 * 4 2 1 33 33 H 1.09005 * 109.46868 * 313.73134 * 6 5 4 34 34 H 1.09002 * 109.47403 * 73.73035 * 6 5 4 35 35 H 1.08997 * 109.46852 * 299.99889 * 7 6 5 36 36 H 1.09002 * 109.47056 * 59.99613 * 7 6 5 37 37 H 1.08997 * 109.47494 * 299.99854 * 8 7 6 38 38 H 1.09002 * 109.47214 * 60.00067 * 8 7 6 39 39 H 0.97003 * 120.00003 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.57501 * 334.41888 * 17 5 4 41 41 H 1.09003 * 109.57597 * 214.04475 * 17 5 4 42 42 H 1.09000 * 108.95505 * 160.50885 * 18 17 5 43 43 H 1.09001 * 108.95577 * 41.85882 * 18 17 5 44 44 H 1.09003 * 109.47170 * 306.05095 * 20 19 18 45 45 H 1.09001 * 109.47716 * 186.05147 * 20 19 18 46 46 H 1.08001 * 120.00279 * 0.27436 * 22 21 20 47 47 H 1.07997 * 119.99835 * 179.97438 * 23 22 21 48 48 H 1.07999 * 119.99751 * 180.02562 * 24 23 22 49 49 H 1.08001 * 119.99730 * 180.02562 * 25 24 23 50 50 H 1.08000 * 120.00376 * 179.97438 * 26 25 24 51 51 H 1.09004 * 109.63126 * 39.78607 * 27 19 18 52 52 H 1.09000 * 109.62796 * 160.37651 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8837 1.0310 0.0000 4 6 2.0292 -0.6991 -1.2745 5 7 3.4446 -1.1214 -1.1709 6 6 3.9732 -1.5174 -2.4830 7 6 5.2975 -2.2604 -2.2962 8 6 5.8477 -2.6735 -3.6628 9 6 7.1525 -3.4047 -3.4788 10 1 7.5494 -3.5597 -2.4864 11 6 7.8391 -3.8768 -4.5773 12 7 7.3555 -3.6885 -5.7858 13 14 9.4560 -4.7838 -4.3492 14 1 9.7789 -4.8637 -2.9020 15 1 9.3370 -6.1554 -4.9060 16 1 10.5375 -4.0539 -5.0584 17 6 4.3021 -0.1426 -0.5409 18 6 4.4087 -0.4680 0.9627 19 7 3.2820 -0.0399 1.6751 20 6 3.4875 -0.1857 3.1223 21 6 4.5752 0.7552 3.5726 22 6 5.8921 0.3351 3.5825 23 6 6.8890 1.1959 4.0023 24 6 6.5692 2.4773 4.4103 25 6 5.2524 2.8977 4.3994 26 6 4.2553 2.0365 3.9810 27 6 2.0198 -0.6842 1.2514 28 1 -0.3634 -1.0274 -0.0225 29 1 -0.3634 0.4943 0.9011 30 1 -0.3634 0.5332 -0.8785 31 1 1.9261 -0.0141 -2.1160 32 1 1.4116 -1.5778 -1.4598 33 1 3.2570 -2.1711 -2.9810 34 1 4.1380 -0.6284 -3.0918 35 1 6.0137 -1.6068 -1.7983 36 1 5.1327 -3.1494 -1.6874 37 1 5.1315 -3.3272 -4.1604 38 1 6.0125 -1.7847 -4.2719 39 1 7.8387 -4.0202 -6.5587 40 1 3.8767 0.8526 -0.6699 41 1 5.2929 -0.1797 -0.9938 42 1 5.2927 0.0232 1.3694 43 1 4.5167 -1.5457 1.0849 44 1 3.7791 -1.2118 3.3463 45 1 2.5618 0.0516 3.6465 46 1 6.1420 -0.6659 3.2634 47 1 7.9178 0.8675 4.0105 48 1 7.3481 3.1499 4.7378 49 1 5.0026 3.8991 4.7178 50 1 3.2265 2.3648 3.9728 51 1 2.1984 -1.7397 1.0458 52 1 1.2742 -0.5828 2.0400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323803612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:58 Heat of formation + Delta-G solvation = 7.979078 kcal Electronic energy + Delta-G solvation = -26784.608711 eV Core-core repulsion = 23361.586747 eV Total energy + Delta-G solvation = -3423.021965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04541 -39.82182 -37.65269 -35.98218 -35.14149 -33.17582 -32.48437 -31.74010 -29.96525 -28.50283 -27.40982 -26.44027 -25.48073 -23.75237 -23.39413 -22.34937 -21.62319 -21.37787 -20.42495 -18.51263 -17.65718 -17.19870 -16.96335 -16.63608 -16.53236 -16.20526 -15.94923 -15.80389 -15.41451 -15.16492 -14.46545 -14.32667 -14.20563 -14.10730 -13.83420 -13.73117 -13.67933 -13.39040 -13.16336 -12.85083 -12.77990 -12.72883 -12.55792 -12.46030 -12.21392 -12.08096 -12.02588 -11.79874 -11.79124 -11.53538 -11.49885 -11.36009 -11.30372 -11.01862 -10.56656 -9.75193 -9.65241 -9.13333 -9.11509 -8.21442 -6.32407 0.46806 0.55919 1.38614 1.38890 1.52612 2.39682 2.76396 2.91741 3.11600 3.24914 3.82373 3.84413 3.97728 4.06221 4.07424 4.16103 4.20852 4.25538 4.33025 4.34078 4.41101 4.42462 4.51812 4.65513 4.67650 4.70812 4.72387 4.75270 4.82530 4.84235 4.87917 4.90586 4.96559 4.98201 5.07529 5.13918 5.16674 5.21308 5.22251 5.24824 5.34553 5.46729 5.50881 5.62148 5.67679 5.73058 5.75727 5.84371 6.11233 6.15012 6.21414 6.27342 6.34173 6.48275 6.84243 7.36787 8.90791 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.003158 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.143041 B = 8863.415180 C =11039.925080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.070 0.930 4 C 0.065 3.935 5 N -0.557 5.557 6 C 0.074 3.926 7 C -0.086 4.086 8 C 0.027 3.973 9 C -0.541 4.541 10 H 0.057 0.943 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.065 3.935 18 C 0.086 3.914 19 N -0.547 5.547 20 C 0.101 3.899 21 C -0.087 4.087 22 C -0.129 4.129 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.107 4.107 27 C 0.078 3.922 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.048 0.952 36 H 0.048 0.952 37 H -0.008 1.008 38 H -0.011 1.011 39 H 0.264 0.736 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.012 0.988 44 H 0.037 0.963 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.130 0.870 48 H 0.138 0.862 49 H 0.141 0.859 50 H 0.135 0.865 51 H 0.035 0.965 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 12.818 22.261 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.088 0.912 4 C -0.062 4.062 5 N -0.281 5.281 6 C -0.053 4.053 7 C -0.124 4.124 8 C -0.011 4.011 9 C -0.579 4.579 10 H 0.076 0.924 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.063 4.063 18 C -0.045 4.045 19 N -0.270 5.270 20 C -0.025 4.025 21 C -0.088 4.088 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.125 4.125 27 C -0.049 4.049 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.030 0.970 44 H 0.055 0.945 45 H 0.118 0.882 46 H 0.133 0.867 47 H 0.148 0.852 48 H 0.156 0.844 49 H 0.159 0.841 50 H 0.152 0.848 51 H 0.053 0.947 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.735 12.852 22.264 28.259 hybrid contribution 1.215 -0.803 -1.067 1.806 sum -10.520 12.049 21.197 26.555 Atomic orbital electron populations 1.21782 0.92643 1.02378 1.02626 1.20938 0.96766 0.99617 0.92907 0.91207 1.22546 0.87556 0.98816 0.97300 1.60778 1.02570 1.42862 1.21902 1.21956 0.96519 0.97778 0.89093 1.21394 0.94765 0.98695 0.97506 1.18958 0.94707 0.94530 0.92856 1.21697 1.07101 1.36078 0.93037 0.92439 1.25987 1.01908 0.97099 0.94863 1.70105 1.40805 1.47737 0.98750 0.85396 0.78813 0.78163 0.78674 1.18670 1.20238 1.20213 1.21895 0.96537 0.93473 0.94440 1.20864 0.93539 0.97106 0.92976 1.59246 1.03303 1.60946 1.03552 1.21042 0.97823 0.96100 0.87551 1.19894 0.94107 0.95685 0.99092 1.21233 0.93153 1.00117 1.00267 1.21371 0.99739 0.94573 0.99436 1.21443 0.97295 0.96198 0.99836 1.21452 0.92934 1.00473 0.99761 1.21215 1.00334 0.92804 0.98187 1.21872 0.90148 0.95951 0.96914 0.92195 0.90958 0.92417 0.95487 0.91009 0.91569 0.96020 0.93381 0.93329 0.98999 0.99222 0.92741 0.93547 0.91973 0.90968 0.96965 0.94473 0.88228 0.86711 0.85197 0.84439 0.84138 0.84758 0.94691 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.85 71.98 0.64 -1.33 16 2 C -0.08 -1.64 2.25 -11.28 -0.03 -1.67 16 3 H 0.07 1.54 7.22 -2.39 -0.02 1.52 16 4 C 0.06 1.62 4.79 86.31 0.41 2.04 16 5 N -0.56 -17.16 3.94 -895.22 -3.53 -20.69 16 6 C 0.07 2.72 4.83 86.30 0.42 3.13 16 7 C -0.09 -3.75 5.12 30.59 0.16 -3.59 16 8 C 0.03 1.48 4.97 29.85 0.15 1.63 16 9 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 10 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 11 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 12 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 13 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 C 0.07 1.94 5.15 87.15 0.45 2.39 16 18 C 0.09 2.27 4.84 87.95 0.43 2.70 16 19 N -0.55 -11.90 4.07 -917.04 -3.73 -15.64 16 20 C 0.10 1.87 5.12 85.56 0.44 2.31 16 21 C -0.09 -1.72 4.84 -19.87 -0.10 -1.81 16 22 C -0.13 -2.70 7.89 22.27 0.18 -2.52 16 23 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 24 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 25 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 26 C -0.11 -1.86 9.70 22.27 0.22 -1.65 16 27 C 0.08 1.54 4.85 85.39 0.41 1.95 16 28 H 0.06 0.84 8.11 -2.39 -0.02 0.82 16 29 H 0.07 0.84 8.02 -2.38 -0.02 0.83 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.03 0.69 8.03 -2.39 -0.02 0.67 16 32 H 0.07 1.76 7.95 -2.39 -0.02 1.74 16 33 H 0.07 2.42 8.03 -2.38 -0.02 2.40 16 34 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 35 H 0.05 2.08 6.38 -2.39 -0.02 2.06 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 40 H 0.05 1.35 6.93 -2.39 -0.02 1.33 16 41 H 0.06 2.06 5.85 -2.39 -0.01 2.05 16 42 H 0.07 1.93 5.39 -2.39 -0.01 1.92 16 43 H 0.01 0.37 8.07 -2.39 -0.02 0.35 16 44 H 0.04 0.73 8.05 -2.39 -0.02 0.71 16 45 H 0.10 1.44 7.65 -2.39 -0.02 1.42 16 46 H 0.11 2.42 7.92 -2.91 -0.02 2.40 16 47 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 49 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 51 H 0.03 0.84 7.57 -2.39 -0.02 0.82 16 52 H 0.09 1.39 7.11 -2.39 -0.02 1.37 16 Total: -1.00 -66.39 397.34 1.03 -65.36 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.85 Total: 15.11 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 5.14 Total: -33.73 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -6.98 Total: -93.99 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -66.39 1.03 -65.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323803612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.340 kcal (2) G-P(sol) polarization free energy of solvation -66.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds