Wall clock time and date at job start Tue Mar 31 2020 10:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46779 * 2 1 4 4 N 1.31889 * 119.61852 * 269.97550 * 3 2 1 5 5 C 1.31852 * 121.72681 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.61682 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46882 * 95.00139 * 6 5 4 8 8 C 1.53000 * 109.46804 * 215.00117 * 6 5 4 9 9 C 1.38224 * 120.76376 * 0.02562 * 5 4 3 10 10 C 1.38627 * 119.16193 * 359.76556 * 9 5 4 11 11 C 1.38180 * 119.61967 * 90.00015 * 3 2 1 12 12 C 1.50701 * 120.41682 * 359.97438 * 11 3 2 13 13 N 1.46893 * 109.47357 * 75.82846 * 12 11 3 14 14 C 1.46903 * 111.00346 * 199.59235 * 13 12 11 15 15 C 1.50696 * 109.47114 * 170.00182 * 14 13 12 16 16 H 1.08005 * 120.00371 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00110 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00360 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47531 * 89.99410 * 19 17 15 21 21 H 1.48500 * 109.47197 * 210.00097 * 19 17 15 22 22 H 1.48500 * 109.46838 * 329.99861 * 19 17 15 23 23 C 1.46907 * 110.99791 * 75.64100 * 13 12 11 24 24 C 1.53004 * 109.46727 * 68.23487 * 23 13 12 25 25 C 1.53000 * 117.51745 * 116.75577 * 24 23 13 26 26 C 1.53002 * 60.00068 * 107.48083 * 25 24 23 27 27 H 1.09005 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47011 * 299.99942 * 1 2 3 29 29 H 1.09005 * 109.46945 * 60.00479 * 1 2 3 30 30 H 1.09002 * 109.46704 * 240.00169 * 2 1 3 31 31 H 1.08998 * 109.46915 * 119.99918 * 2 1 3 32 32 H 1.08997 * 109.47060 * 335.00278 * 6 5 4 33 33 H 1.08997 * 109.47159 * 60.00201 * 7 6 5 34 34 H 1.08998 * 109.46684 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47379 * 299.99986 * 7 6 5 36 36 H 1.09000 * 109.46932 * 299.99965 * 8 6 5 37 37 H 1.09000 * 109.47207 * 60.00463 * 8 6 5 38 38 H 1.09004 * 109.46494 * 180.02562 * 8 6 5 39 39 H 1.07998 * 120.42210 * 180.02562 * 9 5 4 40 40 H 1.07997 * 120.79009 * 180.23606 * 10 9 5 41 41 H 1.09006 * 109.46826 * 315.83422 * 12 11 3 42 42 H 1.09003 * 109.47089 * 195.83685 * 12 11 3 43 43 H 1.08999 * 109.46921 * 290.00541 * 14 13 12 44 44 H 1.08996 * 109.46688 * 50.00730 * 14 13 12 45 45 H 0.96998 * 120.00371 * 180.02562 * 18 17 15 46 46 H 1.09006 * 109.46992 * 308.23867 * 23 13 12 47 47 H 1.08997 * 109.47388 * 188.23302 * 23 13 12 48 48 H 1.09003 * 115.55013 * 331.05199 * 24 23 13 49 49 H 1.09000 * 117.49787 * 214.96926 * 25 24 23 50 50 H 1.08996 * 117.50082 * 359.97438 * 25 24 23 51 51 H 1.08999 * 117.49855 * 252.51535 * 26 25 24 52 52 H 1.09002 * 117.50247 * 107.48718 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2500 2.0352 -1.1466 5 6 2.6896 3.2773 -1.1951 6 6 2.9216 3.9336 -2.5317 7 6 1.6826 4.7403 -2.9256 8 6 4.1299 4.8676 -2.4384 9 6 2.9402 3.9845 -0.0341 10 6 2.7189 3.3732 1.1902 11 6 2.2599 2.0647 1.2012 12 6 2.0085 1.3553 2.5068 13 7 3.0947 0.3998 2.7620 14 6 2.6826 -0.6173 3.7387 15 6 3.7181 -1.7107 3.7924 16 1 4.5950 -1.6555 3.1642 17 6 3.5463 -2.7817 4.6435 18 7 2.4784 -2.8493 5.4081 19 14 4.8302 -4.1369 4.7106 20 1 5.8494 -3.8028 5.7377 21 1 4.1753 -5.4223 5.0628 22 1 5.4867 -4.2629 3.3846 23 6 4.3119 1.0926 3.2053 24 6 4.0817 1.6890 4.5954 25 6 4.9441 1.1602 5.7432 26 6 5.1927 2.5619 5.1825 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1112 3.1683 -3.2843 33 1 1.4931 5.5057 -2.1731 34 1 1.8506 5.2154 -3.8921 35 1 0.8218 4.0750 -2.9920 36 1 3.9402 5.6329 -1.6859 37 1 5.0125 4.2928 -2.1579 38 1 4.2973 5.3426 -3.4051 39 1 3.2998 5.0018 -0.0803 40 1 2.9023 3.9025 2.1136 41 1 1.0599 0.8210 2.4532 42 1 1.9692 2.0853 3.3153 43 1 2.5873 -0.1584 4.7227 44 1 1.7232 -1.0398 3.4402 45 1 2.3576 -3.6026 6.0071 46 1 4.5520 1.8908 2.5027 47 1 5.1389 0.3838 3.2465 48 1 3.0519 1.9634 4.8246 49 1 4.4817 1.0866 6.7275 50 1 5.6755 0.3869 5.5083 51 1 6.0877 2.7109 4.5786 52 1 4.8939 3.4105 5.7979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339010944.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:54 Heat of formation + Delta-G solvation = 41.943249 kcal Electronic energy + Delta-G solvation = -27511.612992 eV Core-core repulsion = 24090.063824 eV Total energy + Delta-G solvation = -3421.549168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44561 -38.09579 -36.23745 -34.90579 -33.36370 -32.77896 -31.78374 -29.50995 -27.31071 -27.27810 -26.71168 -24.51652 -23.86443 -22.36210 -21.83277 -21.55693 -21.50983 -19.77478 -19.02670 -16.77974 -16.28820 -15.94487 -15.44991 -15.05152 -14.66593 -14.48663 -14.35446 -14.12949 -13.88450 -13.80252 -13.35320 -13.00898 -12.98641 -12.79803 -12.58573 -12.24700 -11.99901 -11.80959 -11.70862 -11.51806 -11.35424 -11.21950 -11.15304 -11.06366 -10.97849 -10.96538 -10.79216 -10.58243 -10.57612 -10.44422 -9.98140 -9.79775 -9.46412 -9.24314 -9.20430 -9.05815 -8.42944 -8.33311 -7.23830 -6.01003 -4.00850 1.37762 1.56491 3.31499 3.38682 3.42696 3.96249 4.26366 4.33182 4.44713 4.70312 4.93862 4.98062 5.03868 5.16961 5.21168 5.24486 5.28127 5.32314 5.36342 5.45269 5.48110 5.55170 5.58054 5.61999 5.68041 5.70813 5.76418 5.78288 5.83460 5.92672 5.98977 6.07260 6.10003 6.12105 6.18875 6.20175 6.26873 6.28026 6.36294 6.41437 6.48791 6.50798 6.65293 6.67548 6.75379 6.90111 7.05734 7.25948 7.40319 7.80422 8.07261 8.18818 8.33497 8.54463 9.05616 9.62685 11.09789 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003785 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.349093 B = 7396.284794 C = 8392.493009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C 0.162 3.838 4 N -0.486 5.486 5 C 0.126 3.874 6 C -0.044 4.044 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.181 4.181 10 C -0.072 4.072 11 C -0.113 4.113 12 C 0.089 3.911 13 N -0.524 5.524 14 C 0.192 3.808 15 C -0.498 4.498 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.098 3.902 24 C -0.169 4.169 25 C -0.156 4.156 26 C -0.194 4.194 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.002 0.998 44 H 0.027 0.973 45 H 0.260 0.740 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.087 0.913 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 15.185 -10.186 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C 0.024 3.976 4 N -0.195 5.195 5 C -0.012 4.012 6 C -0.063 4.063 7 C -0.197 4.197 8 C -0.203 4.203 9 C -0.201 4.201 10 C -0.098 4.098 11 C -0.116 4.116 12 C -0.040 4.040 13 N -0.246 5.246 14 C 0.068 3.932 15 C -0.536 4.536 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.030 4.030 24 C -0.188 4.188 25 C -0.193 4.193 26 C -0.232 4.232 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.112 0.888 49 H 0.103 0.897 50 H 0.114 0.886 51 H 0.105 0.895 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.449 14.342 -11.274 18.248 hybrid contribution 0.658 0.143 1.887 2.004 sum 0.209 14.485 -9.387 17.262 Atomic orbital electron populations 1.21664 0.94979 1.01857 1.01256 1.20641 0.95580 0.90743 1.05184 1.21083 0.93254 0.96150 0.87125 1.67312 1.12894 1.09520 1.29791 1.21023 0.95259 0.90199 0.94726 1.19974 0.95777 0.97224 0.93354 1.21781 0.97196 0.99656 1.01036 1.21907 0.97362 0.99200 1.01881 1.21796 1.04182 1.01262 0.92883 1.21477 0.95956 0.94418 0.97948 1.20770 0.99785 0.94185 0.96860 1.21005 0.96554 0.94887 0.91531 1.62351 1.02577 1.12042 1.47650 1.19784 0.96557 0.88471 0.88402 1.21055 1.06351 1.04608 1.21630 0.92174 1.24906 0.95581 0.98107 0.95685 1.69943 1.27201 1.31216 1.25429 0.86611 0.81618 0.81557 0.78320 1.20881 1.21362 1.19846 1.21649 0.94856 0.96235 0.90301 1.22911 0.95572 1.03078 0.97286 1.22816 1.03128 0.95500 0.97858 1.22913 1.00845 0.94570 1.04882 0.92039 0.92931 0.93211 0.90809 0.87112 0.89577 0.92696 0.92241 0.92383 0.92279 0.92364 0.92178 0.85467 0.85461 0.90184 0.94444 0.98045 0.95512 0.93069 0.92836 0.90189 0.88804 0.89743 0.88558 0.89497 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.81 37.16 0.36 -1.61 16 2 C -0.08 -1.36 5.60 -27.88 -0.16 -1.51 16 3 C 0.16 2.68 6.03 -82.59 -0.50 2.18 16 4 N -0.49 -7.85 10.19 -5.74 -0.06 -7.90 16 5 C 0.13 1.74 5.79 -82.59 -0.48 1.26 16 6 C -0.04 -0.47 3.23 -91.77 -0.30 -0.77 16 7 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 8 C -0.15 -1.27 8.62 37.16 0.32 -0.95 16 9 C -0.18 -2.33 9.18 -39.44 -0.36 -2.69 16 10 C -0.07 -1.00 9.16 -39.28 -0.36 -1.36 16 11 C -0.11 -1.81 4.84 -104.48 -0.51 -2.31 16 12 C 0.09 1.52 4.14 -4.98 -0.02 1.50 16 13 N -0.52 -10.43 3.65 -237.51 -0.87 -11.30 16 14 C 0.19 4.64 4.47 -4.98 -0.02 4.61 16 15 C -0.50 -13.20 8.57 -34.44 -0.30 -13.50 16 16 H 0.06 1.61 7.10 -52.48 -0.37 1.24 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.10 1.82 5.29 -3.82 -0.02 1.80 16 24 C -0.17 -2.93 3.89 -90.62 -0.35 -3.28 16 25 C -0.16 -2.74 10.18 -26.73 -0.27 -3.01 16 26 C -0.19 -2.86 10.25 -26.73 -0.27 -3.14 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.74 7.22 -51.93 -0.37 0.36 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.11 2.06 6.15 -51.93 -0.32 1.74 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.13 1.30 6.31 -52.49 -0.33 0.97 16 40 H 0.13 1.58 8.05 -52.49 -0.42 1.15 16 41 H 0.08 1.40 6.14 -51.93 -0.32 1.08 16 42 H 0.04 0.62 6.05 -51.93 -0.31 0.30 16 43 H 0.00 0.05 6.58 -51.93 -0.34 -0.30 16 44 H 0.03 0.70 7.83 -51.93 -0.41 0.29 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.05 0.93 6.92 -51.93 -0.36 0.57 16 47 H 0.08 1.64 6.72 -51.93 -0.35 1.29 16 48 H 0.09 1.68 6.33 -51.93 -0.33 1.36 16 49 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 50 H 0.10 1.80 8.03 -51.93 -0.42 1.38 16 51 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 52 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -28.46 403.59 -11.31 -39.78 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -9.20 Total: 4.38 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.98 Total: -22.23 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.19 Total: -44.23 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -28.46 -11.31 -39.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339010944.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.720 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds