Wall clock time and date at job start Tue Mar 31 2020 10:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46779 * 2 1 4 4 N 1.31889 * 119.61852 * 269.97550 * 3 2 1 5 5 C 1.31852 * 121.72681 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.61682 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46882 * 95.00139 * 6 5 4 8 8 C 1.53000 * 109.46804 * 215.00117 * 6 5 4 9 9 C 1.38224 * 120.76376 * 0.02562 * 5 4 3 10 10 C 1.38627 * 119.16193 * 359.76556 * 9 5 4 11 11 C 1.38180 * 119.61967 * 90.00015 * 3 2 1 12 12 C 1.50701 * 120.41682 * 359.97438 * 11 3 2 13 13 N 1.46893 * 109.47357 * 75.82846 * 12 11 3 14 14 C 1.46903 * 111.00346 * 199.59235 * 13 12 11 15 15 C 1.50696 * 109.47114 * 170.00182 * 14 13 12 16 16 H 1.08005 * 120.00371 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00110 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00360 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47531 * 89.99410 * 19 17 15 21 21 H 1.48500 * 109.47197 * 210.00097 * 19 17 15 22 22 H 1.48500 * 109.46838 * 329.99861 * 19 17 15 23 23 C 1.46907 * 110.99791 * 75.64100 * 13 12 11 24 24 C 1.53004 * 109.46727 * 68.23487 * 23 13 12 25 25 C 1.53000 * 117.51745 * 116.75577 * 24 23 13 26 26 C 1.53002 * 60.00068 * 107.48083 * 25 24 23 27 27 H 1.09005 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47011 * 299.99942 * 1 2 3 29 29 H 1.09005 * 109.46945 * 60.00479 * 1 2 3 30 30 H 1.09002 * 109.46704 * 240.00169 * 2 1 3 31 31 H 1.08998 * 109.46915 * 119.99918 * 2 1 3 32 32 H 1.08997 * 109.47060 * 335.00278 * 6 5 4 33 33 H 1.08997 * 109.47159 * 60.00201 * 7 6 5 34 34 H 1.08998 * 109.46684 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47379 * 299.99986 * 7 6 5 36 36 H 1.09000 * 109.46932 * 299.99965 * 8 6 5 37 37 H 1.09000 * 109.47207 * 60.00463 * 8 6 5 38 38 H 1.09004 * 109.46494 * 180.02562 * 8 6 5 39 39 H 1.07998 * 120.42210 * 180.02562 * 9 5 4 40 40 H 1.07997 * 120.79009 * 180.23606 * 10 9 5 41 41 H 1.09006 * 109.46826 * 315.83422 * 12 11 3 42 42 H 1.09003 * 109.47089 * 195.83685 * 12 11 3 43 43 H 1.08999 * 109.46921 * 290.00541 * 14 13 12 44 44 H 1.08996 * 109.46688 * 50.00730 * 14 13 12 45 45 H 0.96998 * 120.00371 * 180.02562 * 18 17 15 46 46 H 1.09006 * 109.46992 * 308.23867 * 23 13 12 47 47 H 1.08997 * 109.47388 * 188.23302 * 23 13 12 48 48 H 1.09003 * 115.55013 * 331.05199 * 24 23 13 49 49 H 1.09000 * 117.49787 * 214.96926 * 25 24 23 50 50 H 1.08996 * 117.50082 * 359.97438 * 25 24 23 51 51 H 1.08999 * 117.49855 * 252.51535 * 26 25 24 52 52 H 1.09002 * 117.50247 * 107.48718 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2500 2.0352 -1.1466 5 6 2.6896 3.2773 -1.1951 6 6 2.9216 3.9336 -2.5317 7 6 1.6826 4.7403 -2.9256 8 6 4.1299 4.8676 -2.4384 9 6 2.9402 3.9845 -0.0341 10 6 2.7189 3.3732 1.1902 11 6 2.2599 2.0647 1.2012 12 6 2.0085 1.3553 2.5068 13 7 3.0947 0.3998 2.7620 14 6 2.6826 -0.6173 3.7387 15 6 3.7181 -1.7107 3.7924 16 1 4.5950 -1.6555 3.1642 17 6 3.5463 -2.7817 4.6435 18 7 2.4784 -2.8493 5.4081 19 14 4.8302 -4.1369 4.7106 20 1 5.8494 -3.8028 5.7377 21 1 4.1753 -5.4223 5.0628 22 1 5.4867 -4.2629 3.3846 23 6 4.3119 1.0926 3.2053 24 6 4.0817 1.6890 4.5954 25 6 4.9441 1.1602 5.7432 26 6 5.1927 2.5619 5.1825 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1112 3.1683 -3.2843 33 1 1.4931 5.5057 -2.1731 34 1 1.8506 5.2154 -3.8921 35 1 0.8218 4.0750 -2.9920 36 1 3.9402 5.6329 -1.6859 37 1 5.0125 4.2928 -2.1579 38 1 4.2973 5.3426 -3.4051 39 1 3.2998 5.0018 -0.0803 40 1 2.9023 3.9025 2.1136 41 1 1.0599 0.8210 2.4532 42 1 1.9692 2.0853 3.3153 43 1 2.5873 -0.1584 4.7227 44 1 1.7232 -1.0398 3.4402 45 1 2.3576 -3.6026 6.0071 46 1 4.5520 1.8908 2.5027 47 1 5.1389 0.3838 3.2465 48 1 3.0519 1.9634 4.8246 49 1 4.4817 1.0866 6.7275 50 1 5.6755 0.3869 5.5083 51 1 6.0877 2.7109 4.5786 52 1 4.8939 3.4105 5.7979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339010944.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:53 Heat of formation + Delta-G solvation = 28.827254 kcal Electronic energy + Delta-G solvation = -27512.181744 eV Core-core repulsion = 24090.063824 eV Total energy + Delta-G solvation = -3422.117920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59974 -39.54485 -37.32124 -36.27624 -34.71016 -34.44619 -33.15434 -30.75173 -29.12089 -28.06925 -27.98721 -26.04973 -25.08121 -23.75026 -23.14197 -23.06859 -22.66526 -20.95926 -20.39673 -18.33560 -17.91879 -17.05131 -16.95391 -16.56554 -16.08481 -15.90290 -15.62148 -15.34099 -15.16897 -14.82313 -14.51873 -14.44082 -14.17361 -13.99145 -13.78515 -13.58105 -13.36756 -12.99862 -12.94821 -12.84760 -12.72035 -12.64187 -12.58089 -12.45776 -12.41789 -12.26202 -11.99809 -11.95379 -11.86704 -11.74995 -11.63754 -11.32542 -11.08987 -10.69393 -10.55066 -10.52160 -10.23420 -9.50675 -8.87393 -8.13177 -6.19433 0.23931 0.44064 1.40096 1.41714 1.51877 2.42825 2.81141 2.99259 3.20783 3.24486 3.49640 3.75388 3.87748 3.90790 4.00188 4.09853 4.11780 4.17360 4.23501 4.28703 4.38025 4.45294 4.50597 4.51441 4.53659 4.59446 4.71586 4.79884 4.80733 4.84173 4.87052 4.95983 4.99289 5.01014 5.04621 5.08579 5.09466 5.12880 5.20615 5.26854 5.31739 5.34481 5.36450 5.40877 5.41591 5.42295 5.48128 5.58207 5.71583 5.91000 6.14415 6.41253 6.69583 6.95101 7.19511 7.48389 8.97274 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003785 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.349093 B = 7396.284794 C = 8392.493009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C 0.145 3.855 4 N -0.509 5.509 5 C 0.120 3.880 6 C -0.045 4.045 7 C -0.134 4.134 8 C -0.141 4.141 9 C -0.174 4.174 10 C -0.069 4.069 11 C -0.130 4.130 12 C 0.098 3.902 13 N -0.529 5.529 14 C 0.214 3.786 15 C -0.503 4.503 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.931 5.931 19 Si 0.952 3.048 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.270 1.270 23 C 0.105 3.895 24 C -0.181 4.181 25 C -0.179 4.179 26 C -0.152 4.152 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.068 0.932 42 H 0.047 0.953 43 H -0.019 1.019 44 H -0.001 1.001 45 H 0.261 0.739 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.103 0.897 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 17.996 -11.145 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 C 0.008 3.992 4 N -0.218 5.218 5 C -0.018 4.018 6 C -0.064 4.064 7 C -0.192 4.192 8 C -0.199 4.199 9 C -0.193 4.193 10 C -0.095 4.095 11 C -0.132 4.132 12 C -0.030 4.030 13 N -0.252 5.252 14 C 0.088 3.912 15 C -0.542 4.542 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.572 5.572 19 Si 0.778 3.222 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.023 4.023 24 C -0.201 4.201 25 C -0.216 4.216 26 C -0.189 4.189 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.179 0.821 40 H 0.166 0.834 41 H 0.086 0.914 42 H 0.065 0.935 43 H -0.001 1.001 44 H 0.017 0.983 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.121 0.879 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.812 17.164 -12.243 21.098 hybrid contribution 0.266 -0.658 2.098 2.215 sum 1.078 16.506 -10.144 19.404 Atomic orbital electron populations 1.21596 0.93596 1.02320 1.01434 1.20516 0.96852 0.91073 1.03397 1.21051 0.94210 0.96168 0.87768 1.67322 1.13939 1.10975 1.29585 1.21661 0.93908 0.89530 0.96699 1.20084 0.97500 0.97455 0.91357 1.21752 0.95700 0.99282 1.02453 1.21890 0.95699 0.98830 1.03474 1.22133 1.02823 1.02510 0.91827 1.21731 0.94886 0.93477 0.99452 1.20613 1.01716 0.95301 0.95577 1.20892 0.95021 0.94288 0.92822 1.62204 1.03981 1.12839 1.46138 1.19337 0.94629 0.89018 0.88180 1.21293 1.06422 1.05352 1.21097 0.92851 1.25650 0.97369 1.00327 0.95442 1.70058 1.28895 1.32004 1.26241 0.85648 0.79342 0.78797 0.78441 1.20149 1.21069 1.19433 1.21542 0.93226 0.95886 0.91648 1.22792 0.96112 1.04885 0.96308 1.22770 1.03473 0.97668 0.97738 1.22991 0.99624 0.93276 1.03044 0.91461 0.93153 0.92448 0.91307 0.89974 0.90687 0.91891 0.90129 0.94013 0.90955 0.93285 0.90289 0.82109 0.83410 0.91411 0.93539 1.00127 0.98321 0.93047 0.91032 0.92621 0.89438 0.90294 0.90374 0.87879 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.81 71.98 0.71 -3.14 16 2 C -0.08 -2.73 5.60 29.85 0.17 -2.56 16 3 C 0.15 4.85 6.03 42.54 0.26 5.10 16 4 N -0.51 -16.21 10.19 -172.08 -1.75 -17.96 16 5 C 0.12 3.09 5.79 42.55 0.25 3.34 16 6 C -0.04 -0.85 3.23 -11.54 -0.04 -0.89 16 7 C -0.13 -2.12 9.18 71.98 0.66 -1.46 16 8 C -0.14 -1.97 8.62 71.98 0.62 -1.35 16 9 C -0.17 -3.91 9.18 22.36 0.21 -3.71 16 10 C -0.07 -1.77 9.16 22.47 0.21 -1.57 16 11 C -0.13 -4.08 4.84 -19.77 -0.10 -4.17 16 12 C 0.10 3.43 4.14 85.56 0.35 3.79 16 13 N -0.53 -21.79 3.65 -905.35 -3.30 -25.09 16 14 C 0.21 10.84 4.47 85.56 0.38 11.22 16 15 C -0.50 -27.65 8.57 25.60 0.22 -27.43 16 16 H 0.05 2.95 7.10 -2.91 -0.02 2.93 16 17 C 0.01 0.56 5.46 84.65 0.46 1.02 16 18 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 19 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.11 3.91 5.29 86.30 0.46 4.37 16 24 C -0.18 -6.20 3.89 -10.79 -0.04 -6.24 16 25 C -0.18 -6.30 10.18 30.60 0.31 -5.99 16 26 C -0.15 -4.08 10.25 30.60 0.31 -3.76 16 27 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.05 1.46 7.22 -2.39 -0.02 1.45 16 29 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 31 H 0.08 3.25 6.15 -2.39 -0.01 3.24 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.82 6.49 -2.39 -0.02 0.80 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.16 2.52 6.31 -2.91 -0.02 2.50 16 40 H 0.15 3.14 8.05 -2.91 -0.02 3.12 16 41 H 0.07 2.50 6.14 -2.38 -0.01 2.48 16 42 H 0.05 1.53 6.05 -2.39 -0.01 1.51 16 43 H -0.02 -1.03 6.58 -2.39 -0.02 -1.04 16 44 H 0.00 -0.07 7.83 -2.39 -0.02 -0.09 16 45 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.07 2.38 6.92 -2.38 -0.02 2.37 16 47 H 0.06 2.33 6.72 -2.39 -0.02 2.31 16 48 H 0.09 3.12 6.33 -2.39 -0.02 3.10 16 49 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 50 H 0.08 3.00 8.03 -2.39 -0.02 2.98 16 51 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 52 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -63.53 403.59 3.53 -60.01 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.88 Total: 24.78 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 5.39 Total: -33.44 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -4.77 Total: -97.76 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -63.53 3.53 -60.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339010944.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.834 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds