Wall clock time and date at job start Tue Mar 31 2020 11:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47221 * 2 1 4 4 C 1.52997 * 109.47374 * 239.99723 * 2 1 3 5 5 N 1.46899 * 109.47377 * 64.91039 * 4 2 1 6 6 C 1.46895 * 110.99964 * 198.12244 * 5 4 2 7 7 C 1.50692 * 109.47585 * 67.36030 * 6 5 4 8 8 H 1.08001 * 119.99913 * 3.85368 * 7 6 5 9 9 C 1.37876 * 120.00391 * 183.85683 * 7 6 5 10 10 N 1.31511 * 119.99843 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00213 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46787 * 89.99461 * 11 9 7 13 13 H 1.48500 * 109.47006 * 209.99609 * 11 9 7 14 14 H 1.48500 * 109.46908 * 329.99723 * 11 9 7 15 15 C 1.46905 * 110.99838 * 74.16505 * 5 4 2 16 16 C 1.50699 * 109.46943 * 190.00111 * 15 5 4 17 17 C 1.38235 * 119.61689 * 94.97637 * 16 15 5 18 18 C 1.38630 * 119.15880 * 179.78947 * 17 16 15 19 19 C 1.38675 * 118.42052 * 0.47673 * 18 17 16 20 20 C 1.38179 * 119.16264 * 359.50730 * 19 18 17 21 21 N 1.31853 * 119.61911 * 275.00533 * 16 15 5 22 22 C 1.53006 * 109.46889 * 119.99672 * 2 1 3 23 23 C 1.53006 * 109.47007 * 300.00161 * 22 2 1 24 24 C 1.52998 * 109.46960 * 180.02562 * 23 22 2 25 25 C 1.52997 * 109.47289 * 59.99622 * 24 23 22 26 26 C 1.52997 * 109.47374 * 300.00239 * 25 24 23 27 27 C 1.52996 * 109.47126 * 60.00040 * 26 25 24 28 28 H 1.09005 * 109.46993 * 186.21608 * 1 2 3 29 29 H 1.08993 * 109.47728 * 306.21838 * 1 2 3 30 30 H 1.08997 * 109.47062 * 66.22364 * 1 2 3 31 31 H 1.09000 * 109.47260 * 304.90735 * 4 2 1 32 32 H 1.09005 * 109.46998 * 184.90881 * 4 2 1 33 33 H 1.09009 * 109.46993 * 187.35986 * 6 5 4 34 34 H 1.08998 * 109.47025 * 307.35697 * 6 5 4 35 35 H 0.97001 * 120.00212 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.46832 * 70.00248 * 15 5 4 37 37 H 1.09003 * 109.47092 * 310.00184 * 15 5 4 38 38 H 1.07996 * 120.42016 * 0.02562 * 17 16 15 39 39 H 1.07997 * 120.78572 * 180.23607 * 18 17 16 40 40 H 1.07995 * 120.41548 * 179.78074 * 19 18 17 41 41 H 1.07998 * 119.61957 * 180.25726 * 20 19 18 42 42 H 1.08994 * 109.47157 * 60.00442 * 22 2 1 43 43 H 1.09005 * 109.46963 * 300.00157 * 23 22 2 44 44 H 1.08992 * 109.46999 * 60.00268 * 23 22 2 45 45 H 1.09005 * 109.47034 * 299.99652 * 24 23 22 46 46 H 1.08993 * 109.46953 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47130 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.47221 * 60.00516 * 25 24 23 49 49 H 1.08998 * 109.46994 * 299.99557 * 26 25 24 50 50 H 1.09006 * 109.47202 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.46863 * 180.02562 * 27 26 25 52 52 H 1.09001 * 109.46878 * 60.00085 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6496 0.0361 -2.4457 6 6 1.7288 -0.8028 -3.6489 7 6 0.6764 -1.8792 -3.5811 8 1 -0.0254 -1.8973 -2.7603 9 6 0.6092 -2.8409 -4.5667 10 7 1.4635 -2.8187 -5.5664 11 14 -0.6950 -4.1756 -4.4822 12 1 -1.9174 -3.7187 -5.1909 13 1 -0.1816 -5.4109 -5.1269 14 1 -1.0228 -4.4581 -3.0617 15 6 2.4688 1.2467 -2.5930 16 6 1.8873 2.1179 -3.6765 17 6 1.0209 3.1408 -3.3392 18 6 0.4951 3.9393 -4.3431 19 6 0.8540 3.6714 -5.6555 20 6 1.7258 2.6316 -5.9163 21 7 2.2104 1.8952 -4.9353 22 6 2.0399 -0.7212 1.2493 23 6 1.5298 0.0001 2.4986 24 6 2.0403 -0.7207 3.7478 25 6 3.5703 -0.7202 3.7476 26 6 4.0803 -1.4415 2.4984 27 6 3.5699 -0.7206 1.2491 28 1 -0.3633 -1.0217 0.1113 29 1 -0.3634 0.6071 0.8290 30 1 -0.3633 0.4143 -0.9404 31 1 1.6067 -1.7204 -1.2942 32 1 3.1265 -0.7980 -1.2062 33 1 1.5623 -0.1870 -4.5329 34 1 2.7154 -1.2625 -3.7070 35 1 1.4161 -3.4951 -6.2601 36 1 3.4875 0.9657 -2.8603 37 1 2.4785 1.7956 -1.6514 38 1 0.7600 3.3182 -2.3063 39 1 -0.1812 4.7481 -4.1089 40 1 0.4606 4.2709 -6.4631 41 1 2.0136 2.4192 -6.9353 42 1 1.6767 -1.7488 1.2494 43 1 1.8932 1.0279 2.4985 44 1 0.4399 0.0001 2.4985 45 1 1.6773 -1.7485 3.7481 46 1 1.6766 -0.2071 4.6377 47 1 3.9339 -1.2334 4.6378 48 1 3.9333 0.3076 3.7474 49 1 3.7174 -2.4693 2.4987 50 1 5.1704 -1.4408 2.4980 51 1 3.9330 -1.2348 0.3592 52 1 3.9330 0.3071 1.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339012346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:03 Heat of formation + Delta-G solvation = 7.824189 kcal Electronic energy + Delta-G solvation = -27484.632008 eV Core-core repulsion = 24061.603327 eV Total energy + Delta-G solvation = -3423.028681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82948 -39.05579 -36.70560 -33.82110 -32.55838 -31.99292 -31.10853 -30.72691 -28.80191 -27.36969 -26.25558 -24.29552 -23.14276 -22.66291 -22.23029 -21.76636 -20.30314 -19.64880 -19.13261 -16.45923 -16.40240 -15.72725 -15.63347 -15.24367 -14.71939 -14.59211 -14.40177 -14.02895 -13.87216 -13.67147 -13.27710 -13.05385 -12.98325 -12.76280 -12.44126 -12.32775 -12.15792 -11.93803 -11.76693 -11.43648 -11.22036 -11.12300 -11.03078 -10.99278 -10.82883 -10.79019 -10.63398 -10.49008 -10.29225 -9.90470 -9.88546 -9.68158 -9.57251 -9.38700 -9.14617 -8.80985 -8.57787 -8.30335 -7.13726 -5.91143 -3.91612 1.52258 1.69260 3.36112 3.42072 3.45236 4.16444 4.50748 4.70087 4.77456 4.79618 4.83650 5.06274 5.13936 5.18943 5.25469 5.34305 5.40969 5.43527 5.50462 5.51955 5.56289 5.59677 5.60610 5.62492 5.72409 5.85978 5.92736 5.97307 6.00405 6.06162 6.07445 6.10493 6.18097 6.20357 6.22730 6.31088 6.33993 6.35084 6.49977 6.52216 6.52634 6.58820 6.62152 6.69345 6.96081 7.01211 7.09953 7.49249 7.56302 7.90785 8.27542 8.30400 8.53417 8.65932 9.16808 9.70821 11.19104 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004691 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.927114 B = 5967.967207 C = 8200.828990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.060 0.940 4 C 0.066 3.934 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.099 3.901 16 C 0.155 3.845 17 C -0.160 4.160 18 C -0.082 4.082 19 C -0.187 4.187 20 C 0.102 3.898 21 N -0.464 5.464 22 C -0.081 4.081 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.117 4.117 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.023 0.977 33 H 0.049 0.951 34 H -0.010 1.010 35 H 0.259 0.741 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.150 0.850 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 10.924 12.671 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.062 4.062 5 N -0.251 5.251 6 C 0.063 3.937 7 C -0.542 4.542 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.030 4.030 16 C 0.017 3.983 17 C -0.180 4.180 18 C -0.108 4.108 19 C -0.207 4.207 20 C -0.056 4.056 21 N -0.173 5.173 22 C -0.100 4.100 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.155 4.155 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.008 0.992 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.167 0.833 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.086 0.914 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.057 10.272 12.365 16.206 hybrid contribution -0.540 -0.381 -0.131 0.674 sum 1.517 9.891 12.234 15.805 Atomic orbital electron populations 1.21716 0.94950 1.01070 1.01529 1.21165 0.96405 0.98761 0.93491 0.92212 1.22112 0.96791 0.98418 0.88868 1.62130 1.51358 1.06312 1.05320 1.19872 0.95533 0.91304 0.86966 1.21178 1.14936 1.09823 1.08295 0.92092 1.24954 0.96052 0.97916 0.95599 1.69986 1.36389 1.35199 1.11861 0.86620 0.81963 0.81449 0.78082 1.20837 1.21425 1.19946 1.20957 0.95196 0.92738 0.94063 1.21197 0.92807 0.92442 0.91821 1.21859 0.98727 0.97061 1.00357 1.21458 0.97926 0.98506 0.92948 1.22024 1.00914 1.00456 0.97300 1.22722 0.93469 0.90829 0.98561 1.67616 1.24194 1.25365 1.00130 1.21188 0.94772 0.99871 0.94175 1.21605 1.00441 0.99001 0.93950 1.21538 0.95560 1.00767 0.97835 1.21523 0.95898 1.00472 0.97648 1.21537 0.99770 0.99550 0.94845 1.21662 0.95747 1.00426 0.97636 0.93394 0.94331 0.91028 0.89574 0.95881 0.93291 0.99186 0.93177 0.94207 0.90691 0.85280 0.85541 0.85523 0.83287 0.91264 0.92421 0.91782 0.92179 0.92607 0.92673 0.92326 0.92115 0.92499 0.91388 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.61 37.16 0.32 -1.74 16 2 C -0.08 -1.17 2.01 -90.62 -0.18 -1.35 16 3 H 0.06 0.85 6.57 -51.93 -0.34 0.51 16 4 C 0.07 1.23 4.00 -3.83 -0.02 1.22 16 5 N -0.53 -11.07 3.77 -237.52 -0.89 -11.97 16 6 C 0.19 4.98 4.56 -4.98 -0.02 4.96 16 7 C -0.50 -14.26 8.19 -34.44 -0.28 -14.54 16 8 H 0.06 1.71 7.52 -52.49 -0.39 1.31 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 10 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.10 1.82 5.11 -4.97 -0.03 1.80 16 16 C 0.16 2.88 5.73 -82.58 -0.47 2.41 16 17 C -0.16 -2.46 9.72 -39.44 -0.38 -2.85 16 18 C -0.08 -1.12 10.18 -39.28 -0.40 -1.52 16 19 C -0.19 -2.60 10.11 -39.44 -0.40 -3.00 16 20 C 0.10 1.70 11.18 -17.55 -0.20 1.50 16 21 N -0.46 -9.33 8.59 -9.47 -0.08 -9.41 16 22 C -0.08 -1.04 1.78 -90.61 -0.16 -1.20 16 23 C -0.11 -1.24 4.85 -26.73 -0.13 -1.37 16 24 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 25 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 26 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 27 C -0.12 -1.43 4.86 -26.73 -0.13 -1.56 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.50 6.78 -51.93 -0.35 0.15 16 30 H 0.07 1.25 7.59 -51.93 -0.39 0.86 16 31 H 0.09 1.84 6.76 -51.93 -0.35 1.49 16 32 H 0.02 0.43 6.06 -51.93 -0.31 0.11 16 33 H 0.05 1.40 5.77 -51.92 -0.30 1.11 16 34 H -0.01 -0.29 8.11 -51.93 -0.42 -0.71 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.04 0.78 8.12 -51.93 -0.42 0.35 16 37 H 0.07 1.16 6.37 -51.93 -0.33 0.83 16 38 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.92 6.32 -51.93 -0.33 0.60 16 52 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -31.33 395.11 -11.70 -43.03 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -9.34 Total: 1.62 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -3.05 Total: -19.79 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.24 Total: -47.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.33 -11.70 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.857 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds