Wall clock time and date at job start Tue Mar 31 2020 11:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47221 * 2 1 4 4 C 1.52997 * 109.47374 * 239.99723 * 2 1 3 5 5 N 1.46899 * 109.47377 * 64.91039 * 4 2 1 6 6 C 1.46895 * 110.99964 * 198.12244 * 5 4 2 7 7 C 1.50692 * 109.47585 * 67.36030 * 6 5 4 8 8 H 1.08001 * 119.99913 * 3.85368 * 7 6 5 9 9 C 1.37876 * 120.00391 * 183.85683 * 7 6 5 10 10 N 1.31511 * 119.99843 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00213 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46787 * 89.99461 * 11 9 7 13 13 H 1.48500 * 109.47006 * 209.99609 * 11 9 7 14 14 H 1.48500 * 109.46908 * 329.99723 * 11 9 7 15 15 C 1.46905 * 110.99838 * 74.16505 * 5 4 2 16 16 C 1.50699 * 109.46943 * 190.00111 * 15 5 4 17 17 C 1.38235 * 119.61689 * 94.97637 * 16 15 5 18 18 C 1.38630 * 119.15880 * 179.78947 * 17 16 15 19 19 C 1.38675 * 118.42052 * 0.47673 * 18 17 16 20 20 C 1.38179 * 119.16264 * 359.50730 * 19 18 17 21 21 N 1.31853 * 119.61911 * 275.00533 * 16 15 5 22 22 C 1.53006 * 109.46889 * 119.99672 * 2 1 3 23 23 C 1.53006 * 109.47007 * 300.00161 * 22 2 1 24 24 C 1.52998 * 109.46960 * 180.02562 * 23 22 2 25 25 C 1.52997 * 109.47289 * 59.99622 * 24 23 22 26 26 C 1.52997 * 109.47374 * 300.00239 * 25 24 23 27 27 C 1.52996 * 109.47126 * 60.00040 * 26 25 24 28 28 H 1.09005 * 109.46993 * 186.21608 * 1 2 3 29 29 H 1.08993 * 109.47728 * 306.21838 * 1 2 3 30 30 H 1.08997 * 109.47062 * 66.22364 * 1 2 3 31 31 H 1.09000 * 109.47260 * 304.90735 * 4 2 1 32 32 H 1.09005 * 109.46998 * 184.90881 * 4 2 1 33 33 H 1.09009 * 109.46993 * 187.35986 * 6 5 4 34 34 H 1.08998 * 109.47025 * 307.35697 * 6 5 4 35 35 H 0.97001 * 120.00212 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.46832 * 70.00248 * 15 5 4 37 37 H 1.09003 * 109.47092 * 310.00184 * 15 5 4 38 38 H 1.07996 * 120.42016 * 0.02562 * 17 16 15 39 39 H 1.07997 * 120.78572 * 180.23607 * 18 17 16 40 40 H 1.07995 * 120.41548 * 179.78074 * 19 18 17 41 41 H 1.07998 * 119.61957 * 180.25726 * 20 19 18 42 42 H 1.08994 * 109.47157 * 60.00442 * 22 2 1 43 43 H 1.09005 * 109.46963 * 300.00157 * 23 22 2 44 44 H 1.08992 * 109.46999 * 60.00268 * 23 22 2 45 45 H 1.09005 * 109.47034 * 299.99652 * 24 23 22 46 46 H 1.08993 * 109.46953 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47130 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.47221 * 60.00516 * 25 24 23 49 49 H 1.08998 * 109.46994 * 299.99557 * 26 25 24 50 50 H 1.09006 * 109.47202 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.46863 * 180.02562 * 27 26 25 52 52 H 1.09001 * 109.46878 * 60.00085 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6496 0.0361 -2.4457 6 6 1.7288 -0.8028 -3.6489 7 6 0.6764 -1.8792 -3.5811 8 1 -0.0254 -1.8973 -2.7603 9 6 0.6092 -2.8409 -4.5667 10 7 1.4635 -2.8187 -5.5664 11 14 -0.6950 -4.1756 -4.4822 12 1 -1.9174 -3.7187 -5.1909 13 1 -0.1816 -5.4109 -5.1269 14 1 -1.0228 -4.4581 -3.0617 15 6 2.4688 1.2467 -2.5930 16 6 1.8873 2.1179 -3.6765 17 6 1.0209 3.1408 -3.3392 18 6 0.4951 3.9393 -4.3431 19 6 0.8540 3.6714 -5.6555 20 6 1.7258 2.6316 -5.9163 21 7 2.2104 1.8952 -4.9353 22 6 2.0399 -0.7212 1.2493 23 6 1.5298 0.0001 2.4986 24 6 2.0403 -0.7207 3.7478 25 6 3.5703 -0.7202 3.7476 26 6 4.0803 -1.4415 2.4984 27 6 3.5699 -0.7206 1.2491 28 1 -0.3633 -1.0217 0.1113 29 1 -0.3634 0.6071 0.8290 30 1 -0.3633 0.4143 -0.9404 31 1 1.6067 -1.7204 -1.2942 32 1 3.1265 -0.7980 -1.2062 33 1 1.5623 -0.1870 -4.5329 34 1 2.7154 -1.2625 -3.7070 35 1 1.4161 -3.4951 -6.2601 36 1 3.4875 0.9657 -2.8603 37 1 2.4785 1.7956 -1.6514 38 1 0.7600 3.3182 -2.3063 39 1 -0.1812 4.7481 -4.1089 40 1 0.4606 4.2709 -6.4631 41 1 2.0136 2.4192 -6.9353 42 1 1.6767 -1.7488 1.2494 43 1 1.8932 1.0279 2.4985 44 1 0.4399 0.0001 2.4985 45 1 1.6773 -1.7485 3.7481 46 1 1.6766 -0.2071 4.6377 47 1 3.9339 -1.2334 4.6378 48 1 3.9333 0.3076 3.7474 49 1 3.7174 -2.4693 2.4987 50 1 5.1704 -1.4408 2.4980 51 1 3.9330 -1.2348 0.3592 52 1 3.9330 0.3071 1.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339012346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:02 Heat of formation + Delta-G solvation = -8.630452 kcal Electronic energy + Delta-G solvation = -27485.345535 eV Core-core repulsion = 24061.603327 eV Total energy + Delta-G solvation = -3423.742208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11155 -40.13465 -38.16922 -35.19175 -34.52464 -33.22528 -32.48487 -31.65295 -29.95544 -29.23968 -27.66410 -25.98571 -24.37462 -23.99735 -23.34714 -22.99972 -21.75875 -20.60847 -20.46110 -18.51582 -17.67821 -17.12254 -16.88948 -16.49197 -16.39510 -16.07129 -15.67780 -15.25946 -14.99272 -14.86730 -14.52094 -14.31456 -14.15058 -14.02647 -14.00911 -13.63969 -13.54097 -13.25039 -13.12921 -13.06657 -12.70949 -12.55856 -12.46193 -12.36371 -12.14705 -11.97597 -11.92604 -11.88574 -11.69641 -11.40320 -11.25242 -11.08578 -10.72192 -10.69730 -10.67290 -10.51264 -10.13980 -9.83564 -8.92941 -8.15644 -6.24851 0.29322 0.52341 1.36522 1.38304 1.49084 2.39393 2.87003 3.16044 3.43036 3.59780 3.83710 3.87999 3.92679 3.98861 4.09665 4.10963 4.29131 4.34618 4.36137 4.45427 4.47902 4.54160 4.57086 4.63846 4.68660 4.72984 4.81047 4.83915 4.85525 4.89598 4.95843 4.97438 5.07156 5.11470 5.19084 5.26986 5.27628 5.33069 5.33760 5.34381 5.37459 5.42625 5.44730 5.49534 5.53825 5.58590 5.69100 5.70216 5.77993 5.92125 6.15099 6.41110 6.67909 6.93082 7.26919 7.43150 8.95006 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004691 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.927114 B = 5967.967207 C = 8200.828990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 H 0.075 0.925 4 C 0.070 3.930 5 N -0.523 5.523 6 C 0.209 3.791 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.962 3.038 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.103 3.897 16 C 0.120 3.880 17 C -0.158 4.158 18 C -0.077 4.077 19 C -0.174 4.174 20 C 0.073 3.927 21 N -0.517 5.517 22 C -0.076 4.076 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.116 4.116 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.019 0.981 33 H 0.026 0.974 34 H -0.056 1.056 35 H 0.261 0.739 36 H 0.016 0.984 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.043 0.957 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 12.999 14.965 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 H 0.093 0.907 4 C -0.058 4.058 5 N -0.247 5.247 6 C 0.082 3.918 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.787 3.213 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.188 1.188 15 C -0.025 4.025 16 C -0.017 4.017 17 C -0.178 4.178 18 C -0.103 4.103 19 C -0.193 4.193 20 C -0.084 4.084 21 N -0.227 5.227 22 C -0.095 4.095 23 C -0.145 4.145 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.156 4.156 27 C -0.154 4.154 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.044 0.956 34 H -0.038 1.038 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.128 0.872 38 H 0.172 0.828 39 H 0.188 0.812 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.062 0.938 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.176 12.360 14.682 19.193 hybrid contribution 0.087 -0.959 -0.897 1.316 sum 0.263 11.401 13.786 17.891 Atomic orbital electron populations 1.21649 0.94870 1.00662 1.01460 1.21069 0.96281 0.99051 0.92099 0.90711 1.22105 0.96458 0.97248 0.89956 1.62072 1.52359 1.06403 1.03824 1.19425 0.92544 0.91023 0.88769 1.21462 1.15124 1.10540 1.08175 0.92179 1.25871 0.98322 1.00431 0.95084 1.70139 1.38320 1.36258 1.12714 0.85501 0.78997 0.78242 0.78603 1.19981 1.20849 1.18811 1.21025 0.93491 0.91832 0.96157 1.21259 0.95035 0.94150 0.91296 1.22141 0.97428 0.95959 1.02296 1.21988 0.97441 0.98724 0.92107 1.22426 0.98913 0.99069 0.98935 1.23059 0.94864 0.92044 0.98424 1.67468 1.26289 1.27425 1.01551 1.21124 0.95109 0.99036 0.94262 1.21563 1.00568 0.99267 0.93077 1.21537 0.95679 1.00533 0.97834 1.21512 0.95718 1.00792 0.97196 1.21527 1.00208 0.99121 0.94761 1.21628 0.95368 1.00814 0.97570 0.94721 0.91215 0.93404 0.93036 0.96287 0.95621 1.03829 0.93061 0.96577 0.87245 0.82760 0.81158 0.81721 0.82581 0.92863 0.91406 0.91508 0.92737 0.90886 0.91426 0.91615 0.92862 0.91842 0.93811 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.61 71.98 0.62 -3.19 16 2 C -0.07 -1.92 2.01 -10.79 -0.02 -1.94 16 3 H 0.07 1.97 6.57 -2.39 -0.02 1.96 16 4 C 0.07 2.76 4.00 86.30 0.35 3.10 16 5 N -0.52 -23.10 3.77 -905.38 -3.41 -26.51 16 6 C 0.21 11.84 4.56 85.56 0.39 12.23 16 7 C -0.51 -30.52 8.19 25.60 0.21 -30.31 16 8 H 0.06 3.49 7.52 -2.91 -0.02 3.47 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.93 -59.33 13.29 21.45 0.28 -59.04 16 11 Si 0.96 46.34 29.54 68.60 2.03 48.37 16 12 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 15 C 0.10 3.94 5.11 85.56 0.44 4.38 16 16 C 0.12 4.54 5.73 42.55 0.24 4.78 16 17 C -0.16 -4.59 9.72 22.36 0.22 -4.37 16 18 C -0.08 -1.84 10.18 22.47 0.23 -1.61 16 19 C -0.17 -4.46 10.11 22.36 0.23 -4.23 16 20 C 0.07 2.49 11.18 84.67 0.95 3.43 16 21 N -0.52 -21.86 8.59 -183.88 -1.58 -23.44 16 22 C -0.08 -1.89 1.78 -10.79 -0.02 -1.91 16 23 C -0.11 -2.07 4.85 30.60 0.15 -1.92 16 24 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 25 C -0.11 -1.91 5.92 30.59 0.18 -1.73 16 26 C -0.12 -2.41 5.92 30.59 0.18 -2.23 16 27 C -0.12 -2.80 4.86 30.59 0.15 -2.65 16 28 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.07 1.62 6.78 -2.39 -0.02 1.60 16 30 H 0.05 1.64 7.59 -2.39 -0.02 1.62 16 31 H 0.05 2.36 6.76 -2.39 -0.02 2.34 16 32 H 0.02 0.75 6.06 -2.38 -0.01 0.74 16 33 H 0.03 1.58 5.77 -2.38 -0.01 1.57 16 34 H -0.06 -3.60 8.11 -2.39 -0.02 -3.62 16 35 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 37 H 0.11 3.30 6.37 -2.39 -0.02 3.29 16 38 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.16 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.07 1.27 6.57 -2.39 -0.02 1.25 16 45 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 51 H 0.04 1.25 6.32 -2.39 -0.02 1.23 16 52 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.51 395.11 3.31 -70.20 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.86 Total: 19.93 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 5.13 Total: -29.50 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -4.71 Total: -108.99 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.51 3.31 -70.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339012346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.569 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds