Wall clock time and date at job start Tue Mar 31 2020 11:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47358 * 2 1 4 4 C 1.47896 * 110.99818 * 189.99999 * 3 2 1 5 5 C 1.53998 * 107.05466 * 145.84481 * 4 3 2 6 6 H 1.08998 * 110.31121 * 239.75721 * 5 4 3 7 7 N 1.46900 * 110.30556 * 117.69137 * 5 4 3 8 8 C 1.46897 * 111.00106 * 86.45519 * 7 5 4 9 9 H 1.09004 * 109.47126 * 324.99704 * 8 7 5 10 10 C 1.53007 * 109.47401 * 204.99885 * 8 7 5 11 11 C 1.52996 * 109.47079 * 64.99938 * 10 8 7 12 12 C 1.50692 * 109.47146 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99955 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00063 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00208 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47189 * 60.00482 * 16 14 12 18 18 H 1.48498 * 109.47077 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47407 * 300.00369 * 16 14 12 20 20 C 1.50704 * 109.47539 * 84.99718 * 8 7 5 21 21 C 1.38234 * 120.00277 * 220.00538 * 20 8 7 22 22 C 1.38230 * 119.99885 * 180.02562 * 21 20 8 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99518 * 40.02221 * 20 8 7 26 26 C 1.54595 * 105.14078 * 358.77647 * 5 4 3 27 27 H 1.09004 * 110.72538 * 96.39747 * 26 5 4 28 28 C 1.53001 * 110.72485 * 219.68242 * 26 5 4 29 29 C 1.48533 * 110.99958 * 307.40053 * 3 2 1 30 30 H 1.08996 * 109.46946 * 59.99618 * 1 2 3 31 31 H 1.09003 * 109.47466 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46763 * 299.99808 * 1 2 3 33 33 H 1.08997 * 109.46618 * 239.99958 * 2 1 3 34 34 H 1.08996 * 109.46946 * 120.00382 * 2 1 3 35 35 H 1.09004 * 109.91883 * 26.49605 * 4 3 2 36 36 H 1.09003 * 109.92147 * 265.19738 * 4 3 2 37 37 H 1.00905 * 111.00410 * 322.50149 * 7 5 4 38 38 H 1.08999 * 109.47199 * 184.99961 * 10 8 7 39 39 H 1.09006 * 109.46818 * 304.99807 * 10 8 7 40 40 H 1.09005 * 109.46994 * 300.00486 * 11 10 8 41 41 H 1.08997 * 109.47265 * 60.00089 * 11 10 8 42 42 H 0.96997 * 120.00688 * 179.97438 * 15 14 12 43 43 H 1.07992 * 119.99701 * 359.97438 * 21 20 8 44 44 H 1.08000 * 120.00356 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.00616 * 179.70664 * 23 22 21 46 46 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00423 * 359.97438 * 25 20 8 48 48 H 1.08995 * 109.46892 * 59.99857 * 28 26 5 49 49 H 1.08994 * 109.46929 * 179.97438 * 28 26 5 50 50 H 1.09002 * 109.46841 * 300.00515 * 28 26 5 51 51 H 1.09003 * 110.66581 * 318.71326 * 29 3 2 52 52 H 1.09001 * 110.66807 * 81.84555 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4784 1.4313 -0.2398 5 6 3.7624 2.7090 -1.0512 6 1 4.2252 2.4563 -2.0052 7 7 4.6312 3.6149 -0.2881 8 6 6.0478 3.2893 -0.5009 9 1 6.1602 2.2107 -0.6104 10 6 6.8671 3.7681 0.6993 11 6 6.4538 2.9821 1.9452 12 6 7.2603 3.4540 3.1274 13 1 7.9946 4.2362 3.0025 14 6 7.0609 2.8874 4.3684 15 7 6.1672 1.9347 4.5204 16 14 8.0612 3.4720 5.8337 17 1 7.8137 4.9192 6.0563 18 1 7.6600 2.7092 7.0430 19 1 9.5053 3.2521 5.5668 20 6 6.5388 3.9749 -1.7499 21 6 7.3925 3.3124 -2.6120 22 6 7.8432 3.9415 -3.7573 23 6 7.4399 5.2329 -4.0410 24 6 6.5854 5.8951 -3.1794 25 6 6.1357 5.2665 -2.0333 26 6 2.3782 3.3585 -1.2792 27 1 2.1859 4.1290 -0.5325 28 6 2.2768 3.9350 -2.6928 29 6 1.4032 2.1676 -1.1016 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.7895 0.5542 -0.8073 36 1 4.0101 1.4694 0.7111 37 1 4.3995 3.5965 0.6938 38 1 7.9271 3.6071 0.5031 39 1 6.6851 4.8304 0.8629 40 1 5.3937 3.1431 2.1413 41 1 6.6358 1.9199 1.7815 42 1 6.0271 1.5358 5.3933 43 1 7.7079 2.3037 -2.3902 44 1 8.5105 3.4241 -4.4307 45 1 7.7958 5.7262 -4.9334 46 1 6.2705 6.9042 -3.4008 47 1 5.4686 5.7840 -1.3599 48 1 2.4153 3.1365 -3.4216 49 1 1.2946 4.3866 -2.8314 50 1 3.0484 4.6922 -2.8325 51 1 1.3517 1.5731 -2.0138 52 1 0.4126 2.5208 -0.8149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340440560.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:22 Heat of formation + Delta-G solvation = 12.760185 kcal Electronic energy + Delta-G solvation = -27412.446994 eV Core-core repulsion = 23989.632353 eV Total energy + Delta-G solvation = -3422.814640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.75210 -38.84628 -36.24020 -34.11159 -32.91012 -31.20360 -30.64288 -30.28487 -30.12204 -27.15283 -26.16588 -25.19368 -23.47781 -22.35912 -22.21771 -20.97190 -20.60881 -20.02068 -19.36668 -16.67088 -16.23448 -16.15252 -15.59869 -15.02863 -14.92858 -14.72465 -14.57221 -14.44003 -13.92973 -13.37121 -13.11775 -13.07476 -13.01128 -12.89587 -12.61769 -12.43699 -12.29406 -12.18609 -12.07654 -11.70914 -11.45109 -11.31808 -11.00074 -10.97598 -10.92413 -10.88781 -10.81615 -10.67440 -10.57620 -10.48148 -10.24656 -9.78054 -9.38780 -9.14318 -8.65225 -8.35102 -8.32109 -8.28767 -8.01093 -5.99564 -4.01813 1.62607 1.69014 3.34340 3.38772 3.41451 4.05441 4.06793 4.44635 4.48299 4.74302 4.80192 5.05898 5.10592 5.14871 5.19652 5.25762 5.27465 5.36115 5.40107 5.42541 5.45586 5.47832 5.64090 5.66033 5.73978 5.77764 5.79247 5.82431 5.87356 5.90767 5.97193 6.01454 6.02778 6.12483 6.23671 6.25184 6.31807 6.33366 6.39975 6.53803 6.67911 6.75274 6.85134 6.93713 7.02281 7.03673 7.14928 7.28689 7.52385 7.61484 7.77584 7.89888 7.99148 8.42142 9.04065 9.62388 11.11262 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.007290 B = 0.005149 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.774599 B = 5436.316582 C = 8598.513457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 N -0.511 5.511 4 C 0.004 3.996 5 C 0.088 3.912 6 H 0.077 0.923 7 N -0.672 5.672 8 C 0.123 3.877 9 H 0.047 0.953 10 C -0.108 4.108 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.059 4.059 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.086 4.086 26 C -0.084 4.084 27 H 0.090 0.910 28 C -0.136 4.136 29 C 0.037 3.963 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.360 0.640 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.018 0.982 41 H 0.012 0.988 42 H 0.261 0.739 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.129 0.871 48 H 0.046 0.954 49 H 0.051 0.949 50 H 0.062 0.938 51 H 0.039 0.961 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 0.812 -16.990 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 N -0.235 5.235 4 C -0.125 4.125 5 C -0.023 4.023 6 H 0.095 0.905 7 N -0.306 5.306 8 C 0.014 3.986 9 H 0.065 0.935 10 C -0.146 4.146 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.060 4.060 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.104 4.104 26 C -0.103 4.103 27 H 0.109 0.891 28 C -0.193 4.193 29 C -0.091 4.091 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.184 0.816 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.147 0.853 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.082 0.918 51 H 0.058 0.942 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.732 1.386 -16.779 18.527 hybrid contribution 0.917 -1.127 0.591 1.569 sum -6.815 0.259 -16.188 17.566 Atomic orbital electron populations 1.21836 0.95072 1.01515 1.02387 1.22267 0.95784 0.89832 1.00802 1.64794 1.04451 1.11469 1.42788 1.23798 0.89268 0.98292 1.01156 1.22459 0.93579 0.89815 0.96491 0.90487 1.60571 1.01983 1.52085 1.15993 1.20579 0.88431 0.96567 0.93071 0.93508 1.21831 0.98057 1.00920 0.93784 1.19119 0.96630 0.94825 0.90770 1.21155 1.21118 1.20248 0.93332 0.92781 1.24991 0.95329 0.95027 0.98868 1.69938 1.33714 1.25799 1.23775 0.86687 0.80547 0.78865 0.82081 1.20215 1.21338 1.20333 1.20058 0.95891 0.94641 0.95360 1.21052 0.98454 0.99983 0.94649 1.20995 1.00591 0.95392 0.97481 1.21024 0.99201 0.95237 0.99696 1.21150 0.98552 0.99644 0.95385 1.21046 0.98554 0.94436 0.96370 1.22063 0.93331 0.97083 0.97871 0.89127 1.21687 1.01522 1.00779 0.95347 1.23324 0.98698 0.94578 0.92468 0.92800 0.92486 0.91719 0.95215 0.90498 0.94261 0.89033 0.81579 0.92667 0.92223 0.96384 0.96982 0.92979 0.86650 0.86806 0.86949 0.86736 0.85269 0.93470 0.92996 0.91849 0.94233 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.57 37.16 0.36 -1.19 16 2 C 0.04 0.51 5.75 -3.82 -0.02 0.49 16 3 N -0.51 -7.20 5.40 -230.45 -1.24 -8.44 16 4 C 0.00 0.07 6.18 -2.75 -0.02 0.05 16 5 C 0.09 1.23 2.66 -66.35 -0.18 1.06 16 6 H 0.08 1.10 7.41 -51.93 -0.39 0.72 16 7 N -0.67 -10.56 5.27 -99.53 -0.52 -11.09 16 8 C 0.12 2.05 2.10 -68.86 -0.14 1.91 16 9 H 0.05 0.81 7.59 -51.93 -0.39 0.42 16 10 C -0.11 -2.17 4.72 -26.73 -0.13 -2.30 16 11 C 0.02 0.58 4.80 -27.89 -0.13 0.45 16 12 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.06 -0.89 4.63 -104.62 -0.48 -1.38 16 21 C -0.12 -1.74 9.67 -39.59 -0.38 -2.12 16 22 C -0.13 -1.59 10.05 -39.59 -0.40 -1.99 16 23 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 24 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 25 C -0.09 -1.24 9.33 -39.58 -0.37 -1.61 16 26 C -0.08 -1.04 3.37 -88.76 -0.30 -1.34 16 27 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 28 C -0.14 -1.46 9.16 37.16 0.34 -1.12 16 29 C 0.04 0.45 4.54 -1.90 -0.01 0.44 16 30 H 0.05 0.51 6.79 -51.93 -0.35 0.16 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.35 7.81 -51.93 -0.41 -0.05 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.57 7.57 -51.93 -0.39 0.18 16 36 H 0.09 1.66 7.62 -51.93 -0.40 1.27 16 37 H 0.36 6.49 5.97 -39.29 -0.23 6.26 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.46 6.43 -51.93 -0.33 0.13 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 43 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 44 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 47 H 0.13 1.90 7.72 -52.49 -0.41 1.49 16 48 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.04 0.45 7.88 -51.93 -0.41 0.04 16 52 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -28.69 406.02 -12.57 -41.25 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -9.56 Total: 7.13 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -3.07 Total: -25.91 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -1.03 Total: -45.21 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.69 -12.57 -41.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340440560.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.014 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds