Wall clock time and date at job start Tue Mar 31 2020 11:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47358 * 2 1 4 4 C 1.47896 * 110.99818 * 189.99999 * 3 2 1 5 5 C 1.53998 * 107.05466 * 145.84481 * 4 3 2 6 6 H 1.08998 * 110.31121 * 239.75721 * 5 4 3 7 7 N 1.46900 * 110.30556 * 117.69137 * 5 4 3 8 8 C 1.46897 * 111.00106 * 86.45519 * 7 5 4 9 9 H 1.09004 * 109.47126 * 324.99704 * 8 7 5 10 10 C 1.53007 * 109.47401 * 204.99885 * 8 7 5 11 11 C 1.52996 * 109.47079 * 64.99938 * 10 8 7 12 12 C 1.50692 * 109.47146 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99955 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00063 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00208 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47189 * 60.00482 * 16 14 12 18 18 H 1.48498 * 109.47077 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47407 * 300.00369 * 16 14 12 20 20 C 1.50704 * 109.47539 * 84.99718 * 8 7 5 21 21 C 1.38234 * 120.00277 * 220.00538 * 20 8 7 22 22 C 1.38230 * 119.99885 * 180.02562 * 21 20 8 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38235 * 119.99518 * 40.02221 * 20 8 7 26 26 C 1.54595 * 105.14078 * 358.77647 * 5 4 3 27 27 H 1.09004 * 110.72538 * 96.39747 * 26 5 4 28 28 C 1.53001 * 110.72485 * 219.68242 * 26 5 4 29 29 C 1.48533 * 110.99958 * 307.40053 * 3 2 1 30 30 H 1.08996 * 109.46946 * 59.99618 * 1 2 3 31 31 H 1.09003 * 109.47466 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46763 * 299.99808 * 1 2 3 33 33 H 1.08997 * 109.46618 * 239.99958 * 2 1 3 34 34 H 1.08996 * 109.46946 * 120.00382 * 2 1 3 35 35 H 1.09004 * 109.91883 * 26.49605 * 4 3 2 36 36 H 1.09003 * 109.92147 * 265.19738 * 4 3 2 37 37 H 1.00905 * 111.00410 * 322.50149 * 7 5 4 38 38 H 1.08999 * 109.47199 * 184.99961 * 10 8 7 39 39 H 1.09006 * 109.46818 * 304.99807 * 10 8 7 40 40 H 1.09005 * 109.46994 * 300.00486 * 11 10 8 41 41 H 1.08997 * 109.47265 * 60.00089 * 11 10 8 42 42 H 0.96997 * 120.00688 * 179.97438 * 15 14 12 43 43 H 1.07992 * 119.99701 * 359.97438 * 21 20 8 44 44 H 1.08000 * 120.00356 * 179.97438 * 22 21 20 45 45 H 1.08000 * 120.00616 * 179.70664 * 23 22 21 46 46 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00423 * 359.97438 * 25 20 8 48 48 H 1.08995 * 109.46892 * 59.99857 * 28 26 5 49 49 H 1.08994 * 109.46929 * 179.97438 * 28 26 5 50 50 H 1.09002 * 109.46841 * 300.00515 * 28 26 5 51 51 H 1.09003 * 110.66581 * 318.71326 * 29 3 2 52 52 H 1.09001 * 110.66807 * 81.84555 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4784 1.4313 -0.2398 5 6 3.7624 2.7090 -1.0512 6 1 4.2252 2.4563 -2.0052 7 7 4.6312 3.6149 -0.2881 8 6 6.0478 3.2893 -0.5009 9 1 6.1602 2.2107 -0.6104 10 6 6.8671 3.7681 0.6993 11 6 6.4538 2.9821 1.9452 12 6 7.2603 3.4540 3.1274 13 1 7.9946 4.2362 3.0025 14 6 7.0609 2.8874 4.3684 15 7 6.1672 1.9347 4.5204 16 14 8.0612 3.4720 5.8337 17 1 7.8137 4.9192 6.0563 18 1 7.6600 2.7092 7.0430 19 1 9.5053 3.2521 5.5668 20 6 6.5388 3.9749 -1.7499 21 6 7.3925 3.3124 -2.6120 22 6 7.8432 3.9415 -3.7573 23 6 7.4399 5.2329 -4.0410 24 6 6.5854 5.8951 -3.1794 25 6 6.1357 5.2665 -2.0333 26 6 2.3782 3.3585 -1.2792 27 1 2.1859 4.1290 -0.5325 28 6 2.2768 3.9350 -2.6928 29 6 1.4032 2.1676 -1.1016 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.7895 0.5542 -0.8073 36 1 4.0101 1.4694 0.7111 37 1 4.3995 3.5965 0.6938 38 1 7.9271 3.6071 0.5031 39 1 6.6851 4.8304 0.8629 40 1 5.3937 3.1431 2.1413 41 1 6.6358 1.9199 1.7815 42 1 6.0271 1.5358 5.3933 43 1 7.7079 2.3037 -2.3902 44 1 8.5105 3.4241 -4.4307 45 1 7.7958 5.7262 -4.9334 46 1 6.2705 6.9042 -3.4008 47 1 5.4686 5.7840 -1.3599 48 1 2.4153 3.1365 -3.4216 49 1 1.2946 4.3866 -2.8314 50 1 3.0484 4.6922 -2.8325 51 1 1.3517 1.5731 -2.0138 52 1 0.4126 2.5208 -0.8149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340440560.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:21 Heat of formation + Delta-G solvation = -2.506061 kcal Electronic energy + Delta-G solvation = -27413.108988 eV Core-core repulsion = 23989.632353 eV Total energy + Delta-G solvation = -3423.476634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91826 -39.91893 -37.56377 -35.52615 -34.64116 -32.47079 -31.85860 -31.66459 -31.14916 -28.54938 -27.43288 -26.49589 -25.07226 -23.40439 -23.27820 -22.52597 -21.73666 -21.17146 -20.70787 -18.56593 -17.49273 -17.33136 -16.78884 -16.54988 -16.12426 -15.98611 -15.84297 -15.72941 -15.16930 -14.64712 -14.50275 -14.28611 -14.10276 -13.98310 -13.86267 -13.79663 -13.49417 -13.40236 -13.32604 -13.12280 -12.82865 -12.59090 -12.53213 -12.43548 -12.29640 -12.04454 -11.95107 -11.89112 -11.83015 -11.64950 -11.59501 -11.50829 -11.22448 -11.11068 -10.53940 -9.68694 -9.47175 -9.39092 -9.32794 -8.19092 -6.29877 0.56987 0.65156 1.39070 1.41533 1.49386 2.40708 2.98472 2.99570 3.13523 3.20270 3.67018 3.70540 3.91239 4.08675 4.11773 4.21005 4.22441 4.28496 4.28867 4.37138 4.41776 4.43095 4.46820 4.55269 4.57455 4.64935 4.70193 4.76971 4.79631 4.83399 4.88357 4.91693 4.96124 5.04658 5.07972 5.14394 5.16428 5.25090 5.26475 5.31008 5.35750 5.43063 5.50780 5.68675 5.70121 5.74771 5.81551 5.83641 5.92001 6.10871 6.23683 6.25189 6.29846 6.42501 6.85567 7.38984 8.91471 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.007290 B = 0.005149 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.774599 B = 5436.316582 C = 8598.513457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.531 5.531 4 C 0.011 3.989 5 C 0.093 3.907 6 H 0.079 0.921 7 N -0.666 5.666 8 C 0.136 3.864 9 H 0.032 0.968 10 C -0.092 4.092 11 C 0.035 3.965 12 C -0.543 4.543 13 H 0.056 0.944 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.076 4.076 21 C -0.136 4.136 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.129 4.129 25 C -0.097 4.097 26 C -0.079 4.079 27 H 0.076 0.924 28 C -0.127 4.127 29 C 0.044 3.956 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.344 0.656 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.001 0.999 41 H -0.017 1.017 42 H 0.262 0.738 43 H 0.115 0.885 44 H 0.139 0.861 45 H 0.144 0.856 46 H 0.138 0.862 47 H 0.120 0.880 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.054 0.946 51 H 0.054 0.946 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 2.009 -19.175 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 N -0.256 5.256 4 C -0.119 4.119 5 C -0.018 4.018 6 H 0.097 0.903 7 N -0.298 5.298 8 C 0.027 3.973 9 H 0.050 0.950 10 C -0.130 4.130 11 C -0.002 4.002 12 C -0.581 4.581 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.784 3.216 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.077 4.077 21 C -0.155 4.155 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.115 4.115 26 C -0.098 4.098 27 H 0.095 0.905 28 C -0.185 4.185 29 C -0.084 4.084 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.165 0.835 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.019 0.981 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.157 0.843 45 H 0.162 0.838 46 H 0.156 0.844 47 H 0.138 0.862 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.806 2.590 -18.990 20.695 hybrid contribution 0.944 -1.519 1.237 2.175 sum -6.862 1.071 -17.753 19.063 Atomic orbital electron populations 1.21786 0.93000 1.02713 1.02520 1.22313 0.97460 0.88840 1.00327 1.64737 1.03653 1.12865 1.44297 1.23596 0.90116 0.99059 0.99111 1.22484 0.94300 0.89205 0.95792 0.90282 1.60667 1.01779 1.52479 1.14851 1.20320 0.88512 0.95803 0.92710 0.94950 1.21575 0.98232 0.99809 0.93358 1.18928 0.95310 0.93582 0.92351 1.21603 1.21489 1.20391 0.94638 0.92609 1.25887 0.96392 0.95036 1.01983 1.70079 1.35223 1.26964 1.24523 0.85590 0.79115 0.78667 0.78225 1.19227 1.20846 1.19389 1.19870 0.97429 0.95328 0.95057 1.21186 0.98590 1.00305 0.95417 1.21310 1.00373 0.95793 0.96930 1.21419 0.98017 0.94905 1.00280 1.21428 0.98133 1.00643 0.94494 1.21044 0.98993 0.94153 0.97294 1.22031 0.92019 0.96904 0.98869 0.90543 1.21615 1.02300 1.00706 0.93853 1.23348 0.98764 0.93977 0.92285 0.91561 0.90807 0.92583 0.94485 0.92226 0.94065 0.93210 0.83474 0.93181 0.92570 0.98106 0.99874 0.92898 0.86649 0.84299 0.83840 0.84399 0.86188 0.92737 0.91172 0.92677 0.92808 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.57 71.98 0.69 -2.07 16 2 C 0.04 0.97 5.75 86.30 0.50 1.46 16 3 N -0.53 -15.33 5.40 -883.01 -4.76 -20.10 16 4 C 0.01 0.36 6.18 86.45 0.53 0.90 16 5 C 0.09 2.71 2.66 45.80 0.12 2.83 16 6 H 0.08 2.28 7.41 -2.39 -0.02 2.26 16 7 N -0.67 -22.23 5.27 -468.79 -2.47 -24.70 16 8 C 0.14 4.81 2.10 44.17 0.09 4.90 16 9 H 0.03 1.22 7.59 -2.39 -0.02 1.20 16 10 C -0.09 -3.90 4.72 30.60 0.14 -3.75 16 11 C 0.04 1.86 4.80 29.84 0.14 2.01 16 12 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.01 0.31 5.46 84.66 0.46 0.77 16 15 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 16 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 C -0.08 -2.33 4.63 -19.86 -0.09 -2.43 16 21 C -0.14 -3.78 9.67 22.27 0.22 -3.56 16 22 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 23 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 24 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 25 C -0.10 -2.72 9.33 22.27 0.21 -2.52 16 26 C -0.08 -1.92 3.37 -9.59 -0.03 -1.96 16 27 H 0.08 2.11 8.06 -2.38 -0.02 2.09 16 28 C -0.13 -2.49 9.16 71.98 0.66 -1.84 16 29 C 0.04 1.00 4.54 86.65 0.39 1.39 16 30 H 0.07 1.12 6.79 -2.39 -0.02 1.10 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.04 0.87 7.81 -2.39 -0.02 0.85 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.27 7.57 -2.39 -0.02 1.25 16 36 H 0.05 2.01 7.62 -2.39 -0.02 1.99 16 37 H 0.34 13.48 5.97 -89.69 -0.54 12.95 16 38 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.00 0.04 6.43 -2.38 -0.02 0.03 16 41 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 42 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.12 3.09 8.04 -2.91 -0.02 3.07 16 44 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 47 H 0.12 3.55 7.72 -2.91 -0.02 3.52 16 48 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 49 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.05 1.10 7.88 -2.39 -0.02 1.08 16 52 H 0.09 1.89 7.66 -2.39 -0.02 1.87 16 Total: -1.00 -64.09 406.02 0.34 -63.75 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.32 Total: 33.37 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 4.94 Total: -42.74 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -6.95 Total: -101.37 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.09 0.34 -63.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340440560.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.245 kcal (2) G-P(sol) polarization free energy of solvation -64.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds