Wall clock time and date at job start Tue Mar 31 2020 11:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47312 * 2 1 4 4 C 1.48562 * 110.99772 * 285.41706 * 3 2 1 5 5 C 1.54380 * 104.59170 * 200.95799 * 4 3 2 6 6 H 1.08997 * 110.32329 * 264.95808 * 5 4 3 7 7 C 1.53001 * 110.40684 * 142.79780 * 5 4 3 8 8 C 1.54253 * 105.06095 * 23.85797 * 5 4 3 9 9 H 1.09006 * 110.31950 * 241.10046 * 8 5 4 10 10 N 1.46903 * 110.32742 * 118.89352 * 8 5 4 11 11 C 1.46896 * 110.99896 * 167.19311 * 10 8 5 12 12 H 1.09002 * 109.47323 * 35.00290 * 11 10 8 13 13 C 1.53005 * 109.46663 * 155.00388 * 11 10 8 14 14 C 1.53001 * 109.46942 * 294.99798 * 13 11 10 15 15 C 1.50705 * 109.47117 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99733 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99982 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99781 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99669 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47221 * 90.00107 * 19 17 15 21 21 H 1.48496 * 109.46865 * 209.99431 * 19 17 15 22 22 H 1.48501 * 109.47478 * 329.99855 * 19 17 15 23 23 C 1.50701 * 109.47636 * 275.00086 * 11 10 8 24 24 C 1.38237 * 119.99739 * 319.73282 * 23 11 10 25 25 C 1.38231 * 119.99763 * 179.74605 * 24 23 11 26 26 C 1.38235 * 120.00009 * 0.52258 * 25 24 23 27 27 C 1.38232 * 119.99984 * 359.74902 * 26 25 24 28 28 C 1.38231 * 120.00145 * 359.97438 * 27 26 25 29 29 C 1.48561 * 110.99855 * 170.00255 * 3 2 1 30 30 H 1.08997 * 109.47230 * 300.00158 * 1 2 3 31 31 H 1.08999 * 109.46813 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47037 * 60.00112 * 1 2 3 33 33 H 1.09000 * 109.47326 * 120.00293 * 2 1 3 34 34 H 1.09007 * 109.47258 * 239.99915 * 2 1 3 35 35 H 1.09005 * 110.41161 * 319.74063 * 4 3 2 36 36 H 1.09005 * 110.40913 * 82.18054 * 4 3 2 37 37 H 1.09004 * 109.46871 * 298.16526 * 7 5 4 38 38 H 1.08999 * 109.47252 * 58.16289 * 7 5 4 39 39 H 1.08994 * 109.47276 * 178.16816 * 7 5 4 40 40 H 1.00905 * 110.99659 * 43.24440 * 10 8 5 41 41 H 1.08997 * 109.47438 * 55.00161 * 13 11 10 42 42 H 1.09006 * 109.46771 * 175.00695 * 13 11 10 43 43 H 1.09000 * 109.47292 * 299.99894 * 14 13 11 44 44 H 1.08997 * 109.47120 * 60.00193 * 14 13 11 45 45 H 0.97003 * 119.99953 * 180.02562 * 18 17 15 46 46 H 1.07999 * 119.99803 * 359.97438 * 24 23 11 47 47 H 1.08001 * 120.00318 * 180.29779 * 25 24 23 48 48 H 1.08002 * 120.00064 * 179.77700 * 26 25 24 49 49 H 1.07997 * 120.00157 * 180.02562 * 27 26 25 50 50 H 1.08004 * 120.00211 * 180.02562 * 28 27 26 51 51 H 1.09002 * 110.40709 * 277.81191 * 29 3 2 52 52 H 1.08995 * 110.41607 * 40.13610 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8495 2.0098 -1.3371 5 6 2.8502 3.1854 -1.3472 6 1 2.3517 4.1094 -1.0545 7 6 3.4796 3.3382 -2.7334 8 6 3.9260 2.8049 -0.3093 9 1 3.9555 3.5424 0.4929 10 7 5.2417 2.6977 -0.9539 11 6 6.3151 2.6383 0.0472 12 1 5.9665 2.0885 0.9215 13 6 7.5311 1.9278 -0.5507 14 6 7.1746 0.4701 -0.8488 15 6 8.3725 -0.2299 -1.4371 16 1 9.2957 0.3110 -1.5841 17 6 8.2896 -1.5605 -1.7887 18 7 7.1653 -2.2189 -1.6102 19 14 9.7743 -2.4279 -2.5186 20 1 10.5859 -3.0234 -1.4268 21 1 9.3181 -3.5011 -3.4380 22 1 10.5992 -1.4489 -3.2711 23 6 6.7005 4.0372 0.4542 24 6 6.7800 5.0367 -0.4974 25 6 7.1284 6.3210 -0.1233 26 6 7.4079 6.6034 1.2008 27 6 7.3338 5.6026 2.1514 28 6 6.9798 4.3196 1.7782 29 6 3.4849 1.4316 0.2408 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 2.0934 1.2961 -2.1240 36 1 0.8304 2.3770 -1.4581 37 1 4.0340 2.4334 -2.9824 38 1 2.6951 3.4988 -3.4729 39 1 4.1580 4.1913 -2.7323 40 1 5.3911 3.4586 -1.5996 41 1 7.8254 2.4261 -1.4744 42 1 8.3573 1.9617 0.1596 43 1 6.8804 -0.0282 0.0749 44 1 6.3484 0.4361 -1.5590 45 1 7.1071 -3.1552 -1.8572 46 1 6.5663 4.8150 -1.5326 47 1 7.1859 7.1030 -0.8659 48 1 7.6836 7.6060 1.4925 49 1 7.5517 5.8233 3.1859 50 1 6.9215 3.5377 2.5211 51 1 3.6971 1.3635 1.3078 52 1 3.9845 0.6261 -0.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340440576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:24 Heat of formation + Delta-G solvation = 20.794850 kcal Electronic energy + Delta-G solvation = -27540.396132 eV Core-core repulsion = 24117.929901 eV Total energy + Delta-G solvation = -3422.466231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.91002 -38.87894 -36.16254 -34.12914 -32.85415 -30.92814 -30.68402 -30.40280 -30.22056 -27.14748 -25.86329 -25.62727 -23.41496 -22.49615 -22.23517 -21.00333 -20.74463 -19.56245 -19.14169 -17.06124 -16.30352 -16.02682 -15.66423 -15.16355 -14.85876 -14.77429 -14.44712 -14.32388 -14.02252 -13.74176 -13.27704 -13.10595 -13.08300 -12.87071 -12.53788 -12.33231 -12.16362 -11.98215 -11.83641 -11.56926 -11.39530 -11.30676 -11.05459 -10.96268 -10.88877 -10.84332 -10.81490 -10.59729 -10.44050 -10.41120 -10.24506 -9.65851 -9.36192 -8.98791 -8.83898 -8.45038 -8.31179 -8.25650 -7.97052 -5.90617 -3.91259 1.46628 1.48606 3.35920 3.42267 3.45725 3.88539 4.05919 4.52795 4.65409 4.70428 4.76998 4.94413 4.98151 5.06397 5.12208 5.20492 5.21586 5.40560 5.45387 5.55129 5.56910 5.60598 5.62011 5.65878 5.66145 5.75786 5.76549 5.91135 5.91177 6.01201 6.04789 6.07933 6.10600 6.15485 6.19510 6.22708 6.29677 6.39783 6.51551 6.53976 6.56382 6.61119 6.70823 6.86106 7.00216 7.09112 7.20042 7.27400 7.51635 7.77347 7.82851 8.04761 8.19442 8.55596 9.17069 9.71455 11.20312 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.006904 B = 0.005445 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4054.457988 B = 5141.183632 C = 8183.116321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 N -0.514 5.514 4 C 0.041 3.959 5 C -0.092 4.092 6 H 0.072 0.928 7 C -0.144 4.144 8 C 0.089 3.911 9 H 0.045 0.955 10 N -0.660 5.660 11 C 0.123 3.877 12 H 0.081 0.919 13 C -0.091 4.091 14 C 0.033 3.967 15 C -0.517 4.517 16 H 0.050 0.950 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.133 4.133 27 C -0.119 4.119 28 C -0.115 4.115 29 C 0.040 3.960 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.340 0.660 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.007 0.993 44 H 0.032 0.968 45 H 0.257 0.743 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.072 0.928 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 14.448 3.735 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 N -0.238 5.238 4 C -0.087 4.087 5 C -0.111 4.111 6 H 0.090 0.910 7 C -0.202 4.202 8 C -0.022 4.022 9 H 0.063 0.937 10 N -0.293 5.293 11 C 0.013 3.987 12 H 0.099 0.901 13 C -0.129 4.129 14 C -0.004 4.004 15 C -0.556 4.556 16 H 0.069 0.931 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.097 4.097 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.151 4.151 27 C -0.137 4.137 28 C -0.133 4.133 29 C -0.088 4.088 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.163 0.837 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.139 0.861 51 H 0.090 0.910 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.103 13.846 4.031 17.608 hybrid contribution 1.381 -0.082 -0.627 1.519 sum -8.722 13.764 3.404 16.647 Atomic orbital electron populations 1.21710 0.95156 1.01153 1.02001 1.22223 0.95814 0.89519 1.01482 1.65397 1.14631 1.16839 1.26954 1.23142 0.98896 0.95914 0.90778 1.21938 0.95390 0.98078 0.95728 0.90987 1.21771 1.00304 1.02918 0.95230 1.22134 0.89168 0.95981 0.94902 0.93709 1.60925 1.00019 1.50860 1.17528 1.20898 0.93319 0.89575 0.94875 0.90098 1.21626 0.93290 0.99238 0.98708 1.18980 0.96820 0.87843 0.96727 1.21328 0.98139 0.95257 1.40848 0.93134 1.24967 0.95598 0.97631 0.96081 1.69968 1.25210 1.09524 1.48724 0.86700 0.83371 0.79432 0.79097 1.20848 1.21361 1.20013 1.21014 0.97758 0.97400 0.93531 1.20940 1.00719 0.92908 0.99210 1.21071 0.99873 0.96553 0.96122 1.21060 1.01556 0.99021 0.93461 1.21114 1.00038 0.93344 0.99234 1.21100 0.99781 0.96608 0.95860 1.23167 0.87261 0.97700 1.00720 0.92226 0.92577 0.93051 0.90874 0.94089 0.93248 0.90874 0.90275 0.93097 0.93036 0.83708 0.93341 0.93431 0.97479 0.94922 0.93292 0.86276 0.86455 0.86603 0.86454 0.86142 0.90990 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 10.03 37.16 0.37 -1.17 16 2 C 0.04 0.51 5.55 -3.82 -0.02 0.49 16 3 N -0.51 -7.19 5.34 -229.96 -1.23 -8.42 16 4 C 0.04 0.53 5.46 -2.18 -0.01 0.51 16 5 C -0.09 -1.15 3.65 -89.24 -0.33 -1.47 16 6 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.14 -1.72 7.85 37.16 0.29 -1.43 16 8 C 0.09 1.26 3.21 -66.33 -0.21 1.05 16 9 H 0.04 0.66 7.82 -51.93 -0.41 0.25 16 10 N -0.66 -10.20 4.44 -99.51 -0.44 -10.64 16 11 C 0.12 2.04 2.08 -68.86 -0.14 1.90 16 12 H 0.08 1.40 7.22 -51.93 -0.37 1.03 16 13 C -0.09 -1.85 4.81 -26.73 -0.13 -1.98 16 14 C 0.03 0.85 4.86 -27.88 -0.14 0.71 16 15 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.10 -1.39 4.63 -104.62 -0.48 -1.88 16 24 C -0.12 -1.60 9.11 -39.58 -0.36 -1.96 16 25 C -0.12 -1.41 10.05 -39.59 -0.40 -1.80 16 26 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 27 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 28 C -0.11 -1.57 9.67 -39.59 -0.38 -1.95 16 29 C 0.04 0.62 5.46 -2.18 -0.01 0.61 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.54 7.47 -51.93 -0.39 0.15 16 33 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.04 0.59 7.77 -51.92 -0.40 0.19 16 35 H 0.05 0.69 7.47 -51.93 -0.39 0.30 16 36 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 37 H 0.08 1.13 7.55 -51.93 -0.39 0.74 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 40 H 0.34 4.83 3.99 -39.29 -0.16 4.68 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.12 1.50 6.53 -52.49 -0.34 1.16 16 47 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 50 H 0.12 1.55 8.04 -52.48 -0.42 1.13 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 LS Contribution 402.86 15.07 6.07 6.07 Total: -1.00 -30.02 402.86 -12.51 -42.54 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -9.47 Total: 5.32 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.16 Total: -25.59 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.93 Total: -45.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.02 -12.51 -42.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340440576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.333 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds