Wall clock time and date at job start Tue Mar 31 2020 11:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47312 * 2 1 4 4 C 1.48562 * 110.99772 * 285.41706 * 3 2 1 5 5 C 1.54380 * 104.59170 * 200.95799 * 4 3 2 6 6 H 1.08997 * 110.32329 * 264.95808 * 5 4 3 7 7 C 1.53001 * 110.40684 * 142.79780 * 5 4 3 8 8 C 1.54253 * 105.06095 * 23.85797 * 5 4 3 9 9 H 1.09006 * 110.31950 * 241.10046 * 8 5 4 10 10 N 1.46903 * 110.32742 * 118.89352 * 8 5 4 11 11 C 1.46896 * 110.99896 * 167.19311 * 10 8 5 12 12 H 1.09002 * 109.47323 * 35.00290 * 11 10 8 13 13 C 1.53005 * 109.46663 * 155.00388 * 11 10 8 14 14 C 1.53001 * 109.46942 * 294.99798 * 13 11 10 15 15 C 1.50705 * 109.47117 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99733 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99982 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99781 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99669 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47221 * 90.00107 * 19 17 15 21 21 H 1.48496 * 109.46865 * 209.99431 * 19 17 15 22 22 H 1.48501 * 109.47478 * 329.99855 * 19 17 15 23 23 C 1.50701 * 109.47636 * 275.00086 * 11 10 8 24 24 C 1.38237 * 119.99739 * 319.73282 * 23 11 10 25 25 C 1.38231 * 119.99763 * 179.74605 * 24 23 11 26 26 C 1.38235 * 120.00009 * 0.52258 * 25 24 23 27 27 C 1.38232 * 119.99984 * 359.74902 * 26 25 24 28 28 C 1.38231 * 120.00145 * 359.97438 * 27 26 25 29 29 C 1.48561 * 110.99855 * 170.00255 * 3 2 1 30 30 H 1.08997 * 109.47230 * 300.00158 * 1 2 3 31 31 H 1.08999 * 109.46813 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47037 * 60.00112 * 1 2 3 33 33 H 1.09000 * 109.47326 * 120.00293 * 2 1 3 34 34 H 1.09007 * 109.47258 * 239.99915 * 2 1 3 35 35 H 1.09005 * 110.41161 * 319.74063 * 4 3 2 36 36 H 1.09005 * 110.40913 * 82.18054 * 4 3 2 37 37 H 1.09004 * 109.46871 * 298.16526 * 7 5 4 38 38 H 1.08999 * 109.47252 * 58.16289 * 7 5 4 39 39 H 1.08994 * 109.47276 * 178.16816 * 7 5 4 40 40 H 1.00905 * 110.99659 * 43.24440 * 10 8 5 41 41 H 1.08997 * 109.47438 * 55.00161 * 13 11 10 42 42 H 1.09006 * 109.46771 * 175.00695 * 13 11 10 43 43 H 1.09000 * 109.47292 * 299.99894 * 14 13 11 44 44 H 1.08997 * 109.47120 * 60.00193 * 14 13 11 45 45 H 0.97003 * 119.99953 * 180.02562 * 18 17 15 46 46 H 1.07999 * 119.99803 * 359.97438 * 24 23 11 47 47 H 1.08001 * 120.00318 * 180.29779 * 25 24 23 48 48 H 1.08002 * 120.00064 * 179.77700 * 26 25 24 49 49 H 1.07997 * 120.00157 * 180.02562 * 27 26 25 50 50 H 1.08004 * 120.00211 * 180.02562 * 28 27 26 51 51 H 1.09002 * 110.40709 * 277.81191 * 29 3 2 52 52 H 1.08995 * 110.41607 * 40.13610 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8495 2.0098 -1.3371 5 6 2.8502 3.1854 -1.3472 6 1 2.3517 4.1094 -1.0545 7 6 3.4796 3.3382 -2.7334 8 6 3.9260 2.8049 -0.3093 9 1 3.9555 3.5424 0.4929 10 7 5.2417 2.6977 -0.9539 11 6 6.3151 2.6383 0.0472 12 1 5.9665 2.0885 0.9215 13 6 7.5311 1.9278 -0.5507 14 6 7.1746 0.4701 -0.8488 15 6 8.3725 -0.2299 -1.4371 16 1 9.2957 0.3110 -1.5841 17 6 8.2896 -1.5605 -1.7887 18 7 7.1653 -2.2189 -1.6102 19 14 9.7743 -2.4279 -2.5186 20 1 10.5859 -3.0234 -1.4268 21 1 9.3181 -3.5011 -3.4380 22 1 10.5992 -1.4489 -3.2711 23 6 6.7005 4.0372 0.4542 24 6 6.7800 5.0367 -0.4974 25 6 7.1284 6.3210 -0.1233 26 6 7.4079 6.6034 1.2008 27 6 7.3338 5.6026 2.1514 28 6 6.9798 4.3196 1.7782 29 6 3.4849 1.4316 0.2408 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 2.0934 1.2961 -2.1240 36 1 0.8304 2.3770 -1.4581 37 1 4.0340 2.4334 -2.9824 38 1 2.6951 3.4988 -3.4729 39 1 4.1580 4.1913 -2.7323 40 1 5.3911 3.4586 -1.5996 41 1 7.8254 2.4261 -1.4744 42 1 8.3573 1.9617 0.1596 43 1 6.8804 -0.0282 0.0749 44 1 6.3484 0.4361 -1.5590 45 1 7.1071 -3.1552 -1.8572 46 1 6.5663 4.8150 -1.5326 47 1 7.1859 7.1030 -0.8659 48 1 7.6836 7.6060 1.4925 49 1 7.5517 5.8233 3.1859 50 1 6.9215 3.5377 2.5211 51 1 3.6971 1.3635 1.3078 52 1 3.9845 0.6261 -0.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340440576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:23 Heat of formation + Delta-G solvation = 4.625656 kcal Electronic energy + Delta-G solvation = -27541.097281 eV Core-core repulsion = 24117.929901 eV Total energy + Delta-G solvation = -3423.167380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05939 -39.93966 -37.42992 -35.63308 -34.62748 -32.28892 -31.82923 -31.68318 -31.33397 -28.55608 -27.28600 -26.87501 -25.01115 -23.52367 -23.31237 -22.51208 -21.97543 -20.96836 -20.29678 -18.50050 -17.96091 -17.31031 -16.85889 -16.53023 -16.15568 -15.99856 -15.86672 -15.47065 -15.19451 -15.10301 -14.56076 -14.27219 -14.22348 -14.07888 -13.88218 -13.81256 -13.38999 -13.33968 -13.09308 -13.01785 -12.74991 -12.62940 -12.49872 -12.38226 -12.25768 -12.08235 -11.94392 -11.88769 -11.78519 -11.63280 -11.57817 -11.41708 -11.22808 -11.07347 -10.49744 -9.80601 -9.57837 -9.53239 -9.23121 -8.14631 -6.24615 0.46928 0.51938 1.38419 1.39578 1.50530 2.42398 2.86614 2.91906 3.17915 3.44008 3.59949 3.64545 3.82730 3.99356 4.05387 4.14478 4.17361 4.30087 4.32500 4.36948 4.40623 4.52987 4.58336 4.58911 4.60971 4.66707 4.70067 4.73925 4.81861 4.88298 4.92433 4.95562 4.97984 5.04378 5.04930 5.10441 5.13987 5.18272 5.22991 5.32858 5.37508 5.49586 5.56674 5.60517 5.63086 5.65936 5.79689 5.88698 6.00764 6.03580 6.14402 6.26286 6.33633 6.59366 6.94050 7.43249 8.96250 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.006904 B = 0.005445 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4054.457988 B = 5141.183632 C = 8183.116321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.035 3.965 3 N -0.510 5.510 4 C 0.041 3.959 5 C -0.086 4.086 6 H 0.093 0.907 7 C -0.139 4.139 8 C 0.095 3.905 9 H 0.047 0.953 10 N -0.671 5.671 11 C 0.138 3.862 12 H 0.064 0.936 13 C -0.076 4.076 14 C 0.048 3.952 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.265 1.265 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.131 4.131 29 C 0.044 3.956 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.033 0.967 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.348 0.652 41 H 0.047 0.953 42 H 0.042 0.958 43 H -0.025 1.025 44 H 0.006 0.994 45 H 0.260 0.740 46 H 0.122 0.878 47 H 0.144 0.856 48 H 0.147 0.853 49 H 0.141 0.859 50 H 0.118 0.882 51 H 0.066 0.934 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 17.110 3.490 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 N -0.234 5.234 4 C -0.087 4.087 5 C -0.105 4.105 6 H 0.111 0.889 7 C -0.196 4.196 8 C -0.015 4.015 9 H 0.065 0.935 10 N -0.305 5.305 11 C 0.028 3.972 12 H 0.082 0.918 13 C -0.114 4.114 14 C 0.011 3.989 15 C -0.579 4.579 16 H 0.071 0.929 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.189 1.189 23 C -0.114 4.114 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.150 4.150 29 C -0.085 4.085 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.172 0.828 41 H 0.066 0.934 42 H 0.061 0.939 43 H -0.007 1.007 44 H 0.025 0.975 45 H 0.069 0.931 46 H 0.140 0.860 47 H 0.162 0.838 48 H 0.164 0.836 49 H 0.159 0.841 50 H 0.136 0.864 51 H 0.084 0.916 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.066 16.524 3.786 19.715 hybrid contribution 1.362 -0.905 -0.518 1.716 sum -8.704 15.619 3.269 18.177 Atomic orbital electron populations 1.21642 0.92556 1.02238 1.02579 1.22289 0.97898 0.89010 1.00182 1.65458 1.12949 1.17165 1.27806 1.23221 1.00344 0.95650 0.89497 1.21964 0.94518 0.98600 0.95413 0.88857 1.21696 1.00778 1.01871 0.95288 1.22069 0.89045 0.94855 0.95542 0.93476 1.60819 1.00382 1.51591 1.17754 1.20463 0.91915 0.90847 0.94020 0.91818 1.21373 0.95041 0.96289 0.98741 1.18743 0.95164 0.90855 0.94185 1.21764 0.98942 0.96040 1.41183 0.92905 1.25884 0.98738 0.98487 0.96376 1.70115 1.27483 1.09907 1.49561 0.85564 0.79508 0.78232 0.78441 1.19938 1.20790 1.18902 1.20740 0.99921 0.96182 0.94550 1.21059 1.01078 0.93479 0.99074 1.21404 0.98746 0.96317 0.97154 1.21475 0.99935 1.00216 0.93038 1.21413 0.99162 0.92553 1.00777 1.21230 1.00489 0.97773 0.95497 1.23030 0.88351 0.97319 0.99778 0.91648 0.91327 0.92311 0.91692 0.96059 0.94864 0.88493 0.93362 0.91162 0.91781 0.82789 0.93418 0.93948 1.00655 0.97528 0.93117 0.85996 0.83813 0.83554 0.84128 0.86415 0.91585 0.95396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 10.03 71.98 0.72 -2.05 16 2 C 0.03 0.97 5.55 86.30 0.48 1.45 16 3 N -0.51 -14.65 5.34 -881.46 -4.71 -19.36 16 4 C 0.04 1.04 5.46 86.45 0.47 1.51 16 5 C -0.09 -2.07 3.65 -9.90 -0.04 -2.10 16 6 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 7 C -0.14 -3.19 7.85 71.98 0.56 -2.63 16 8 C 0.10 2.79 3.21 45.81 0.15 2.94 16 9 H 0.05 1.38 7.82 -2.38 -0.02 1.36 16 10 N -0.67 -21.78 4.44 -468.73 -2.08 -23.86 16 11 C 0.14 4.81 2.08 44.17 0.09 4.90 16 12 H 0.06 2.40 7.22 -2.39 -0.02 2.39 16 13 C -0.08 -3.28 4.81 30.60 0.15 -3.14 16 14 C 0.05 2.59 4.86 29.85 0.15 2.74 16 15 C -0.54 -31.90 9.11 25.60 0.23 -31.66 16 16 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.16 5.46 84.66 0.46 0.62 16 18 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 19 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 23 C -0.11 -3.28 4.63 -19.87 -0.09 -3.37 16 24 C -0.13 -3.27 9.11 22.27 0.20 -3.07 16 25 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 26 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 27 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 28 C -0.13 -3.53 9.67 22.27 0.22 -3.32 16 29 C 0.04 1.48 5.46 86.45 0.47 1.95 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.14 7.47 -2.39 -0.02 1.13 16 33 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 34 H 0.02 0.67 7.77 -2.38 -0.02 0.65 16 35 H 0.03 0.96 7.47 -2.38 -0.02 0.94 16 36 H 0.10 2.03 7.85 -2.38 -0.02 2.01 16 37 H 0.05 1.42 7.55 -2.38 -0.02 1.40 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.30 7.07 -2.39 -0.02 1.29 16 40 H 0.35 10.06 3.99 -89.69 -0.36 9.70 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 43 H -0.02 -1.50 8.14 -2.39 -0.02 -1.51 16 44 H 0.01 0.37 7.75 -2.39 -0.02 0.36 16 45 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.12 2.95 6.53 -2.91 -0.02 2.93 16 47 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 48 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 49 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 50 H 0.12 3.11 8.04 -2.91 -0.02 3.09 16 51 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.03 1.17 7.91 -2.39 -0.02 1.15 16 Total: -1.00 -67.76 402.86 0.92 -66.84 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.50 Total: 28.75 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 4.90 Total: -42.17 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -6.50 Total: -101.09 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.76 0.92 -66.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340440576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.462 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds