Wall clock time and date at job start Tue Mar 31 2020 11:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47037 * 2 1 4 4 C 1.48561 * 110.99852 * 59.43727 * 3 2 1 5 5 C 1.54381 * 104.59771 * 159.04206 * 4 3 2 6 6 H 1.08996 * 110.40798 * 217.20492 * 5 4 3 7 7 N 1.46900 * 110.32315 * 95.03748 * 5 4 3 8 8 C 1.46905 * 110.99407 * 89.36778 * 7 5 4 9 9 H 1.08994 * 109.47387 * 35.00016 * 8 7 5 10 10 C 1.53001 * 109.46587 * 154.99842 * 8 7 5 11 11 C 1.53002 * 109.47422 * 294.99598 * 10 8 7 12 12 C 1.50695 * 109.47525 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99807 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00226 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00074 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99865 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47194 * 269.99899 * 16 14 12 18 18 H 1.48499 * 109.46974 * 30.00196 * 16 14 12 19 19 H 1.48502 * 109.47075 * 150.00028 * 16 14 12 20 20 C 1.50700 * 109.46986 * 274.99443 * 8 7 5 21 21 C 1.38233 * 119.99954 * 319.72843 * 20 8 7 22 22 C 1.38235 * 119.99796 * 179.78519 * 21 20 8 23 23 C 1.38236 * 119.99830 * 0.47057 * 22 21 20 24 24 C 1.38235 * 120.00188 * 359.76471 * 23 22 21 25 25 C 1.38230 * 119.99710 * 140.00366 * 20 8 7 26 26 C 1.54264 * 105.05654 * 336.14363 * 5 4 3 27 27 H 1.09004 * 110.31828 * 118.99884 * 26 5 4 28 28 C 1.52993 * 110.32524 * 241.10483 * 26 5 4 29 29 C 1.48563 * 111.00248 * 174.85120 * 3 2 1 30 30 H 1.08997 * 109.47282 * 294.16315 * 1 2 3 31 31 H 1.08995 * 109.47574 * 54.16855 * 1 2 3 32 32 H 1.09009 * 109.47071 * 174.16527 * 1 2 3 33 33 H 1.09005 * 109.47281 * 240.00188 * 2 1 3 34 34 H 1.08999 * 109.47412 * 119.99997 * 2 1 3 35 35 H 1.08993 * 110.41310 * 40.25752 * 4 3 2 36 36 H 1.09007 * 110.41179 * 277.81724 * 4 3 2 37 37 H 1.00905 * 110.99708 * 213.31453 * 7 5 4 38 38 H 1.09005 * 109.46856 * 175.00377 * 10 8 7 39 39 H 1.08998 * 109.47625 * 54.99715 * 10 8 7 40 40 H 1.08998 * 109.47047 * 60.00241 * 11 10 8 41 41 H 1.09003 * 109.47282 * 300.00509 * 11 10 8 42 42 H 0.97001 * 120.00407 * 179.97438 * 15 14 12 43 43 H 1.08004 * 120.00070 * 0.02562 * 21 20 8 44 44 H 1.08001 * 119.99991 * 180.24948 * 22 21 20 45 45 H 1.08007 * 120.00125 * 179.78884 * 23 22 21 46 46 H 1.07995 * 120.00182 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.00230 * 359.97438 * 25 20 8 48 48 H 1.08992 * 109.47257 * 59.99914 * 28 26 5 49 49 H 1.09000 * 109.47468 * 180.02562 * 28 26 5 50 50 H 1.09006 * 109.47104 * 299.99984 * 28 26 5 51 51 H 1.09002 * 110.40328 * 82.18321 * 29 3 2 52 52 H 1.09001 * 110.40865 * 319.74529 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5321 2.1220 1.1943 5 6 2.5121 3.3049 1.3483 6 1 2.7046 3.5042 2.4024 7 7 1.9717 4.5037 0.6935 8 6 1.1472 5.2856 1.6246 9 1 1.5700 5.2202 2.6271 10 6 1.1202 6.7483 1.1768 11 6 2.5264 7.3412 1.2857 12 6 2.4997 8.7821 0.8453 13 1 1.5723 9.2304 0.5206 14 6 3.6591 9.5281 0.8569 15 7 3.6359 10.7855 0.4720 16 14 5.2630 8.7530 1.4192 17 1 5.4190 8.9452 2.8834 18 1 5.2461 7.3007 1.1095 19 1 6.3988 9.3969 0.7116 20 6 -0.2565 4.7372 1.6346 21 6 -0.8495 4.3342 0.4527 22 6 -2.1354 3.8271 0.4625 23 6 -2.8319 3.7321 1.6528 24 6 -2.2407 4.1397 2.8340 25 6 -0.9531 4.6427 2.8248 26 6 3.8063 2.8473 0.6445 27 1 4.0415 3.5134 -0.1857 28 6 4.9676 2.8095 1.6398 29 6 3.4994 1.4266 0.1245 30 1 -0.3634 0.4206 0.9376 31 1 -0.3634 0.6016 -0.8331 32 1 -0.3634 -1.0224 -0.1045 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5668 1.4823 2.0760 36 1 0.5186 2.4872 1.0281 37 1 2.7122 5.0682 0.3047 38 1 0.4384 7.3110 1.8146 39 1 0.7809 6.8056 0.1426 40 1 3.2083 6.7786 0.6481 41 1 2.8658 7.2840 2.3200 42 1 4.4515 11.3105 0.4805 43 1 -0.3066 4.4118 -0.4778 44 1 -2.5972 3.5084 -0.4603 45 1 -3.8379 3.3391 1.6600 46 1 -2.7846 4.0652 3.7640 47 1 -0.4912 4.9613 3.7476 48 1 4.7344 2.1118 2.4439 49 1 5.8741 2.4854 1.1285 50 1 5.1220 3.8051 2.0560 51 1 3.9671 1.2681 -0.8473 52 1 3.8420 0.6780 0.8389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340440584.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:26 Heat of formation + Delta-G solvation = 18.950492 kcal Electronic energy + Delta-G solvation = -27832.876503 eV Core-core repulsion = 24410.330294 eV Total energy + Delta-G solvation = -3422.546208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91158 -38.81339 -36.34894 -34.30178 -32.95614 -31.16220 -30.66764 -30.50608 -30.14412 -27.95707 -26.21753 -25.15574 -23.44450 -22.65446 -22.13432 -20.94507 -20.72918 -19.72497 -19.43827 -17.01773 -16.47098 -16.26074 -15.79636 -15.32561 -15.01478 -14.81606 -14.51988 -14.21596 -13.89086 -13.50752 -13.39324 -13.11081 -13.08243 -12.92074 -12.72892 -12.62572 -12.48683 -12.37711 -12.18703 -11.79575 -11.56281 -11.55096 -11.18064 -11.06518 -10.99001 -10.93749 -10.86463 -10.70914 -10.64799 -10.49461 -9.98054 -9.78133 -9.68060 -9.22456 -8.66265 -8.56197 -8.45582 -8.31321 -8.12403 -6.05727 -4.03743 1.60656 1.67595 3.27172 3.35023 3.36166 3.96969 4.03547 4.37425 4.42227 4.53668 4.64722 4.95857 5.04855 5.07071 5.11448 5.15887 5.20242 5.27706 5.34803 5.36738 5.40230 5.43573 5.51198 5.52371 5.60939 5.66517 5.68151 5.76505 5.79414 5.82991 5.86453 5.91276 5.93596 6.08261 6.08815 6.16965 6.19047 6.26193 6.30081 6.39011 6.57037 6.71376 6.77364 6.80354 6.81579 6.95332 7.05093 7.23302 7.28175 7.30425 7.52614 7.73892 7.78831 8.52716 9.00120 9.56351 11.07843 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.004747 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.358574 B = 5897.052840 C = 7886.809964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 N -0.498 5.498 4 C 0.041 3.959 5 C 0.089 3.911 6 H 0.050 0.950 7 N -0.667 5.667 8 C 0.120 3.880 9 H 0.047 0.953 10 C -0.099 4.099 11 C -0.012 4.012 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.879 3.121 17 H -0.279 1.279 18 H -0.266 1.266 19 H -0.288 1.288 20 C -0.060 4.060 21 C -0.082 4.082 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.101 4.101 27 H 0.089 0.911 28 C -0.146 4.146 29 C 0.040 3.960 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.031 0.969 36 H 0.100 0.900 37 H 0.354 0.646 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.014 0.986 41 H 0.007 0.993 42 H 0.263 0.737 43 H 0.132 0.868 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.078 0.922 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -22.323 2.511 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 N -0.222 5.222 4 C -0.088 4.088 5 C -0.022 4.022 6 H 0.068 0.932 7 N -0.302 5.302 8 C 0.010 3.990 9 H 0.065 0.935 10 C -0.137 4.137 11 C -0.050 4.050 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.707 3.293 17 H -0.205 1.205 18 H -0.191 1.191 19 H -0.214 1.214 20 C -0.060 4.060 21 C -0.100 4.100 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.120 4.120 27 H 0.107 0.893 28 C -0.204 4.204 29 C -0.088 4.088 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.177 0.823 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.133 0.867 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.097 0.903 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.113 -22.250 1.692 23.137 hybrid contribution 1.829 -0.288 1.708 2.519 sum -4.284 -22.539 3.399 23.193 Atomic orbital electron populations 1.21763 0.94757 1.01345 1.02674 1.22227 0.96320 0.89996 1.00255 1.65465 1.05663 1.12175 1.38920 1.23329 1.01217 0.93819 0.90400 1.22366 0.92452 0.91563 0.95824 0.93233 1.60495 1.27080 1.08188 1.34459 1.20704 0.89712 0.94063 0.94477 0.93540 1.21652 1.00042 0.90456 1.01578 1.19603 0.92457 0.97056 0.95863 1.21100 0.96619 0.93972 1.43881 0.90962 1.25029 0.98898 0.94675 0.94815 1.69912 1.28295 1.07739 1.48192 0.86791 0.83644 0.79974 0.78896 1.20475 1.19105 1.21402 1.19979 0.95935 0.97182 0.92951 1.21061 0.93875 0.96335 0.98712 1.21148 0.95207 1.00653 0.97627 1.21031 0.99538 1.01410 0.92999 1.20986 0.95371 1.00299 0.97838 1.21029 0.95011 1.00371 0.97723 1.22134 0.94415 0.96898 0.98584 0.89279 1.21874 0.97705 1.02129 0.98664 1.23131 0.89397 0.95929 1.00372 0.92822 0.91520 0.92673 0.90992 0.95414 0.95097 0.88191 0.82266 0.92006 0.91530 0.96743 0.97423 0.92749 0.85052 0.86697 0.86953 0.86815 0.86694 0.92909 0.92367 0.92170 0.90345 0.94227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.61 37.16 0.36 -1.06 16 2 C 0.04 0.41 5.65 -3.83 -0.02 0.39 16 3 N -0.50 -5.99 5.45 -229.97 -1.25 -7.24 16 4 C 0.04 0.51 4.88 -2.18 -0.01 0.50 16 5 C 0.09 1.18 3.03 -66.33 -0.20 0.98 16 6 H 0.05 0.68 7.01 -51.93 -0.36 0.32 16 7 N -0.67 -10.06 5.41 -99.50 -0.54 -10.59 16 8 C 0.12 1.91 2.24 -68.86 -0.15 1.76 16 9 H 0.05 0.75 7.30 -51.93 -0.38 0.37 16 10 C -0.10 -1.92 4.72 -26.73 -0.13 -2.05 16 11 C -0.01 -0.28 3.87 -27.88 -0.11 -0.39 16 12 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 13 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 16 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 C -0.06 -0.88 3.70 -104.63 -0.39 -1.26 16 21 C -0.08 -1.16 7.65 -39.58 -0.30 -1.46 16 22 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 23 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.12 -1.67 9.67 -39.58 -0.38 -2.05 16 26 C -0.10 -1.22 3.33 -89.24 -0.30 -1.52 16 27 H 0.09 1.17 7.52 -51.93 -0.39 0.78 16 28 C -0.15 -1.59 8.92 37.15 0.33 -1.26 16 29 C 0.04 0.44 6.04 -2.18 -0.01 0.43 16 30 H 0.05 0.55 7.25 -51.93 -0.38 0.18 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.27 7.97 -51.93 -0.41 -0.14 16 35 H 0.03 0.38 7.98 -51.93 -0.41 -0.03 16 36 H 0.10 1.38 4.63 -51.92 -0.24 1.14 16 37 H 0.35 5.83 5.78 -39.29 -0.23 5.60 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.01 0.33 5.48 -51.93 -0.28 0.04 16 41 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.13 1.98 7.73 -52.48 -0.41 1.57 16 44 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 46 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.11 1.46 8.04 -52.49 -0.42 1.04 16 48 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.04 0.41 7.58 -51.93 -0.39 0.01 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -29.57 397.14 -12.00 -41.57 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -9.36 Total: 6.45 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -2.94 Total: -25.93 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.02 Total: -44.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.57 -12.00 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340440584.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.520 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds