Wall clock time and date at job start Tue Mar 31 2020 11:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47037 * 2 1 4 4 C 1.48561 * 110.99852 * 59.43727 * 3 2 1 5 5 C 1.54381 * 104.59771 * 159.04206 * 4 3 2 6 6 H 1.08996 * 110.40798 * 217.20492 * 5 4 3 7 7 N 1.46900 * 110.32315 * 95.03748 * 5 4 3 8 8 C 1.46905 * 110.99407 * 89.36778 * 7 5 4 9 9 H 1.08994 * 109.47387 * 35.00016 * 8 7 5 10 10 C 1.53001 * 109.46587 * 154.99842 * 8 7 5 11 11 C 1.53002 * 109.47422 * 294.99598 * 10 8 7 12 12 C 1.50695 * 109.47525 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99807 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00226 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00074 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99865 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47194 * 269.99899 * 16 14 12 18 18 H 1.48499 * 109.46974 * 30.00196 * 16 14 12 19 19 H 1.48502 * 109.47075 * 150.00028 * 16 14 12 20 20 C 1.50700 * 109.46986 * 274.99443 * 8 7 5 21 21 C 1.38233 * 119.99954 * 319.72843 * 20 8 7 22 22 C 1.38235 * 119.99796 * 179.78519 * 21 20 8 23 23 C 1.38236 * 119.99830 * 0.47057 * 22 21 20 24 24 C 1.38235 * 120.00188 * 359.76471 * 23 22 21 25 25 C 1.38230 * 119.99710 * 140.00366 * 20 8 7 26 26 C 1.54264 * 105.05654 * 336.14363 * 5 4 3 27 27 H 1.09004 * 110.31828 * 118.99884 * 26 5 4 28 28 C 1.52993 * 110.32524 * 241.10483 * 26 5 4 29 29 C 1.48563 * 111.00248 * 174.85120 * 3 2 1 30 30 H 1.08997 * 109.47282 * 294.16315 * 1 2 3 31 31 H 1.08995 * 109.47574 * 54.16855 * 1 2 3 32 32 H 1.09009 * 109.47071 * 174.16527 * 1 2 3 33 33 H 1.09005 * 109.47281 * 240.00188 * 2 1 3 34 34 H 1.08999 * 109.47412 * 119.99997 * 2 1 3 35 35 H 1.08993 * 110.41310 * 40.25752 * 4 3 2 36 36 H 1.09007 * 110.41179 * 277.81724 * 4 3 2 37 37 H 1.00905 * 110.99708 * 213.31453 * 7 5 4 38 38 H 1.09005 * 109.46856 * 175.00377 * 10 8 7 39 39 H 1.08998 * 109.47625 * 54.99715 * 10 8 7 40 40 H 1.08998 * 109.47047 * 60.00241 * 11 10 8 41 41 H 1.09003 * 109.47282 * 300.00509 * 11 10 8 42 42 H 0.97001 * 120.00407 * 179.97438 * 15 14 12 43 43 H 1.08004 * 120.00070 * 0.02562 * 21 20 8 44 44 H 1.08001 * 119.99991 * 180.24948 * 22 21 20 45 45 H 1.08007 * 120.00125 * 179.78884 * 23 22 21 46 46 H 1.07995 * 120.00182 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.00230 * 359.97438 * 25 20 8 48 48 H 1.08992 * 109.47257 * 59.99914 * 28 26 5 49 49 H 1.09000 * 109.47468 * 180.02562 * 28 26 5 50 50 H 1.09006 * 109.47104 * 299.99984 * 28 26 5 51 51 H 1.09002 * 110.40328 * 82.18321 * 29 3 2 52 52 H 1.09001 * 110.40865 * 319.74529 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5321 2.1220 1.1943 5 6 2.5121 3.3049 1.3483 6 1 2.7046 3.5042 2.4024 7 7 1.9717 4.5037 0.6935 8 6 1.1472 5.2856 1.6246 9 1 1.5700 5.2202 2.6271 10 6 1.1202 6.7483 1.1768 11 6 2.5264 7.3412 1.2857 12 6 2.4997 8.7821 0.8453 13 1 1.5723 9.2304 0.5206 14 6 3.6591 9.5281 0.8569 15 7 3.6359 10.7855 0.4720 16 14 5.2630 8.7530 1.4192 17 1 5.4190 8.9452 2.8834 18 1 5.2461 7.3007 1.1095 19 1 6.3988 9.3969 0.7116 20 6 -0.2565 4.7372 1.6346 21 6 -0.8495 4.3342 0.4527 22 6 -2.1354 3.8271 0.4625 23 6 -2.8319 3.7321 1.6528 24 6 -2.2407 4.1397 2.8340 25 6 -0.9531 4.6427 2.8248 26 6 3.8063 2.8473 0.6445 27 1 4.0415 3.5134 -0.1857 28 6 4.9676 2.8095 1.6398 29 6 3.4994 1.4266 0.1245 30 1 -0.3634 0.4206 0.9376 31 1 -0.3634 0.6016 -0.8331 32 1 -0.3634 -1.0224 -0.1045 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5668 1.4823 2.0760 36 1 0.5186 2.4872 1.0281 37 1 2.7122 5.0682 0.3047 38 1 0.4384 7.3110 1.8146 39 1 0.7809 6.8056 0.1426 40 1 3.2083 6.7786 0.6481 41 1 2.8658 7.2840 2.3200 42 1 4.4515 11.3105 0.4805 43 1 -0.3066 4.4118 -0.4778 44 1 -2.5972 3.5084 -0.4603 45 1 -3.8379 3.3391 1.6600 46 1 -2.7846 4.0652 3.7640 47 1 -0.4912 4.9613 3.7476 48 1 4.7344 2.1118 2.4439 49 1 5.8741 2.4854 1.1285 50 1 5.1220 3.8051 2.0560 51 1 3.9671 1.2681 -0.8473 52 1 3.8420 0.6780 0.8389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340440584.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:26 Heat of formation + Delta-G solvation = 2.008735 kcal Electronic energy + Delta-G solvation = -27833.611152 eV Core-core repulsion = 24410.330294 eV Total energy + Delta-G solvation = -3423.280858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.95643 -39.79183 -37.58839 -35.50529 -34.72264 -32.71418 -31.84419 -31.54359 -31.00175 -29.19273 -27.64171 -26.10760 -24.94233 -23.61089 -23.11303 -22.32782 -21.86157 -20.83181 -20.63980 -18.98279 -17.65901 -17.29216 -16.73153 -16.51134 -16.32947 -15.91186 -15.84154 -15.39544 -15.16599 -14.86509 -14.69030 -14.34752 -14.12319 -14.02122 -13.90275 -13.72890 -13.61255 -13.46524 -13.29669 -13.12981 -12.88025 -12.68303 -12.40010 -12.30845 -12.12082 -12.01277 -11.85391 -11.81221 -11.74817 -11.64495 -11.57818 -11.49978 -11.29231 -11.26668 -10.76739 -9.67022 -9.44923 -9.33073 -9.26535 -8.29251 -6.33480 0.58386 0.66459 1.34186 1.36272 1.47610 2.35062 2.99149 3.05965 3.09596 3.23337 3.59516 3.69546 3.93507 4.09707 4.16235 4.22193 4.27329 4.28453 4.31354 4.40861 4.41355 4.43453 4.52230 4.57326 4.58850 4.64458 4.68038 4.75342 4.76757 4.82047 4.85813 4.93737 4.95555 4.97876 5.00770 5.11699 5.20275 5.21732 5.24645 5.28259 5.32613 5.37244 5.48055 5.52300 5.65154 5.70577 5.76706 5.81890 5.97016 6.20206 6.24792 6.29018 6.33119 6.49107 6.74502 7.30701 8.87851 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.004747 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.358574 B = 5897.052840 C = 7886.809964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 N -0.514 5.514 4 C 0.049 3.951 5 C 0.087 3.913 6 H 0.046 0.954 7 N -0.668 5.668 8 C 0.134 3.866 9 H 0.046 0.954 10 C -0.088 4.088 11 C -0.004 4.004 12 C -0.530 4.530 13 H 0.028 0.972 14 C 0.005 3.995 15 N -0.952 5.952 16 Si 0.951 3.049 17 H -0.269 1.269 18 H -0.241 1.241 19 H -0.285 1.285 20 C -0.074 4.074 21 C -0.092 4.092 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.100 4.100 27 H 0.076 0.924 28 C -0.141 4.141 29 C 0.044 3.956 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.088 0.912 37 H 0.344 0.656 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.025 0.975 41 H 0.014 0.986 42 H 0.266 0.734 43 H 0.116 0.884 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.120 0.880 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.047 0.953 51 H 0.083 0.917 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -25.502 3.536 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 N -0.238 5.238 4 C -0.079 4.079 5 C -0.023 4.023 6 H 0.064 0.936 7 N -0.302 5.302 8 C 0.024 3.976 9 H 0.064 0.936 10 C -0.126 4.126 11 C -0.041 4.041 12 C -0.568 4.568 13 H 0.046 0.954 14 C -0.192 4.192 15 N -0.593 5.593 16 Si 0.774 3.226 17 H -0.195 1.195 18 H -0.164 1.164 19 H -0.211 1.211 20 C -0.075 4.075 21 C -0.110 4.110 22 C -0.149 4.149 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.120 4.120 27 H 0.094 0.906 28 C -0.199 4.199 29 C -0.084 4.084 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.166 0.834 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.134 0.866 44 H 0.150 0.850 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.138 0.862 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.066 0.934 51 H 0.102 0.898 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.922 -25.459 2.720 26.280 hybrid contribution 1.623 0.735 1.341 2.230 sum -4.299 -24.724 4.061 25.422 Atomic orbital electron populations 1.21716 0.94474 1.02176 1.01633 1.22284 0.96555 0.89020 1.00960 1.65452 1.06297 1.13408 1.38643 1.23175 1.00355 0.93567 0.90840 1.22430 0.93410 0.90947 0.95555 0.93573 1.60534 1.26756 1.08357 1.34531 1.20455 0.91172 0.91716 0.94222 0.93625 1.21445 0.97605 0.92956 1.00580 1.19494 0.94804 0.93988 0.95861 1.21448 0.95095 0.96666 1.43615 0.95392 1.26024 1.03258 0.95065 0.94849 1.70076 1.29631 1.09647 1.49940 0.85651 0.78047 0.80251 0.78650 1.19465 1.16432 1.21120 1.19854 0.95280 0.98585 0.93795 1.20986 0.94781 0.97353 0.97919 1.21373 0.94538 1.00072 0.98946 1.21381 1.00587 1.00274 0.92348 1.21303 0.94791 0.99225 0.99165 1.21198 0.95842 1.00746 0.97481 1.22124 0.94192 0.97300 0.98354 0.90604 1.21835 0.97704 1.01702 0.98659 1.23120 0.88913 0.95408 1.00946 0.93706 0.92699 0.90839 0.90105 0.94750 0.94741 0.89357 0.83423 0.93220 0.92988 0.95717 0.96815 0.92548 0.86631 0.85008 0.84145 0.84344 0.86160 0.91950 0.91045 0.93414 0.89824 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.61 71.98 0.69 -1.78 16 2 C 0.04 0.72 5.65 86.30 0.49 1.21 16 3 N -0.51 -11.55 5.45 -881.49 -4.81 -16.35 16 4 C 0.05 1.18 4.88 86.45 0.42 1.60 16 5 C 0.09 2.23 3.03 45.81 0.14 2.37 16 6 H 0.05 1.22 7.01 -2.39 -0.02 1.20 16 7 N -0.67 -20.11 5.41 -468.72 -2.53 -22.64 16 8 C 0.13 4.29 2.24 44.17 0.10 4.39 16 9 H 0.05 1.46 7.30 -2.39 -0.02 1.44 16 10 C -0.09 -3.51 4.72 30.60 0.14 -3.36 16 11 C 0.00 -0.18 3.87 29.85 0.12 -0.07 16 12 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 13 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 14 C 0.00 0.27 5.47 84.65 0.46 0.73 16 15 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 16 Si 0.95 44.02 27.47 68.60 1.88 45.91 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 C -0.07 -2.17 3.70 -19.87 -0.07 -2.24 16 21 C -0.09 -2.60 7.65 22.27 0.17 -2.43 16 22 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 23 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 24 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 25 C -0.13 -3.50 9.67 22.27 0.22 -3.29 16 26 C -0.10 -2.28 3.33 -9.90 -0.03 -2.31 16 27 H 0.08 1.93 7.52 -2.38 -0.02 1.91 16 28 C -0.14 -2.78 8.92 71.98 0.64 -2.14 16 29 C 0.04 0.89 6.04 86.45 0.52 1.41 16 30 H 0.04 0.85 7.25 -2.39 -0.02 0.83 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.03 0.59 7.97 -2.39 -0.02 0.57 16 35 H 0.03 0.80 7.98 -2.39 -0.02 0.78 16 36 H 0.09 2.37 4.63 -2.38 -0.01 2.36 16 37 H 0.34 11.34 5.78 -89.69 -0.52 10.82 16 38 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.02 1.10 5.48 -2.39 -0.01 1.08 16 41 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 42 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 43 H 0.12 3.58 7.73 -2.91 -0.02 3.55 16 44 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 47 H 0.12 2.93 8.04 -2.91 -0.02 2.90 16 48 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 49 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.05 0.92 7.58 -2.39 -0.02 0.90 16 Total: -1.00 -65.68 397.14 0.06 -65.62 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.29 Total: 31.98 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 4.92 Total: -44.42 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -7.04 Total: -99.08 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Total: -65.68 0.06 -65.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340440584.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.626 kcal (2) G-P(sol) polarization free energy of solvation -65.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds