Wall clock time and date at job start Tue Mar 31 2020 11:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 N 1.46897 * 109.47381 * 119.99932 * 2 1 3 5 5 C 1.46853 * 110.99856 * 299.21170 * 4 2 1 6 6 C 1.53033 * 109.52295 * 174.15878 * 5 4 2 7 7 C 1.53115 * 109.28263 * 59.17979 * 6 5 4 8 8 N 1.46893 * 109.52516 * 182.44256 * 7 6 5 9 9 C 1.46901 * 111.00087 * 175.72989 * 8 7 6 10 10 C 1.46905 * 111.00138 * 299.67955 * 8 7 6 11 11 C 1.50693 * 109.47271 * 170.00050 * 10 8 7 12 12 C 1.38627 * 119.75187 * 269.73090 * 11 10 8 13 13 C 1.37619 * 120.25101 * 179.72300 * 12 11 10 14 14 C 1.40712 * 119.74422 * 0.56874 * 13 12 11 15 15 C 1.41396 * 120.25067 * 179.68302 * 14 13 12 16 16 H 1.07995 * 120.00358 * 155.30726 * 15 14 13 17 17 C 1.39949 * 119.99508 * 335.31221 * 15 14 13 18 18 N 1.30831 * 119.99984 * 342.22991 * 17 15 14 19 19 Si 1.86803 * 120.00067 * 162.23153 * 17 15 14 20 20 H 1.48499 * 109.47060 * 94.66183 * 19 17 15 21 21 H 1.48498 * 109.46937 * 214.66469 * 19 17 15 22 22 H 1.48503 * 109.46774 * 334.66466 * 19 17 15 23 23 C 1.40721 * 119.51247 * 359.70336 * 14 13 12 24 24 C 1.37624 * 119.73969 * 0.02562 * 23 14 13 25 25 C 1.53125 * 109.15872 * 302.34690 * 7 6 5 26 26 C 1.46847 * 111.00299 * 175.00265 * 4 2 1 27 27 H 1.08998 * 109.47227 * 300.00518 * 1 2 3 28 28 H 1.09005 * 109.46791 * 60.00469 * 1 2 3 29 29 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47571 * 240.00322 * 2 1 3 31 31 H 1.09001 * 109.47285 * 60.00122 * 3 2 1 32 32 H 1.09003 * 109.47060 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46908 * 299.99459 * 3 2 1 34 34 H 1.08995 * 109.46304 * 294.17419 * 5 4 2 35 35 H 1.09002 * 109.45892 * 54.14081 * 5 4 2 36 36 H 1.09008 * 109.50288 * 299.23977 * 6 5 4 37 37 H 1.09000 * 109.50387 * 179.12493 * 6 5 4 38 38 H 1.08999 * 109.57665 * 62.27811 * 7 6 5 39 39 H 1.09000 * 109.47282 * 59.99624 * 9 8 7 40 40 H 1.09002 * 109.47838 * 179.97438 * 9 8 7 41 41 H 1.09008 * 109.47021 * 299.99879 * 9 8 7 42 42 H 1.08998 * 109.46841 * 290.00208 * 10 8 7 43 43 H 1.08996 * 109.46502 * 49.99859 * 10 8 7 44 44 H 1.08001 * 119.87791 * 359.97438 * 12 11 10 45 45 H 1.08000 * 120.13327 * 180.27385 * 13 12 11 46 46 H 0.96996 * 119.99421 * 179.97438 * 18 17 15 47 47 H 1.07996 * 120.13240 * 179.97438 * 23 14 13 48 48 H 1.08002 * 119.87230 * 180.02562 * 24 23 14 49 49 H 1.09000 * 109.50275 * 297.71125 * 25 7 6 50 50 H 1.08999 * 109.50173 * 177.59351 * 25 7 6 51 51 H 1.09002 * 109.46206 * 305.85171 * 26 4 2 52 52 H 1.08998 * 109.46203 * 65.83631 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5643 -0.0157 2.4206 6 6 1.9681 -0.8417 3.6439 7 6 3.4906 -1.0030 3.6650 8 7 3.8794 -1.8442 4.8047 9 6 5.3252 -2.1040 4.7982 10 6 3.4594 -1.2369 6.0747 11 6 3.6505 -2.2286 7.1932 12 6 2.6179 -3.0883 7.5342 13 6 2.7832 -4.0018 8.5501 14 6 4.0020 -4.0530 9.2515 15 6 4.1811 -4.9828 10.3015 16 1 5.1748 -5.3102 10.5693 17 6 3.0706 -5.4789 10.9938 18 7 1.9242 -4.8520 10.9265 19 14 3.2250 -7.0362 12.0139 20 1 3.5087 -6.6765 13.4264 21 1 1.9546 -7.8020 11.9436 22 1 4.3345 -7.8680 11.4824 23 6 5.0413 -3.1717 8.9004 24 6 4.8556 -2.2701 7.8773 25 6 3.9437 -1.6663 2.3614 26 6 3.4827 -0.8163 1.1751 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 2.0228 0.9712 2.4813 35 1 0.4796 0.0889 2.3948 36 1 1.4988 -1.8242 3.5907 37 1 1.6436 -0.3315 4.5508 38 1 3.9603 -0.0239 3.7579 39 1 5.8646 -1.1589 4.8613 40 1 5.5862 -2.7285 5.6527 41 1 5.5980 -2.6172 3.8760 42 1 4.0612 -0.3492 6.2695 43 1 2.4079 -0.9568 6.0132 44 1 1.6815 -3.0438 6.9980 45 1 1.9790 -4.6737 8.8113 46 1 1.1545 -5.1961 11.4060 47 1 5.9808 -3.2020 9.4323 48 1 5.6520 -1.5930 7.6058 49 1 3.5055 -2.6616 2.2880 50 1 5.0308 -1.7451 2.3519 51 1 3.7914 -1.2933 0.2449 52 1 3.9322 0.1744 1.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343518996.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:59 Heat of formation + Delta-G solvation = 20.029449 kcal Electronic energy + Delta-G solvation = -26759.403943 eV Core-core repulsion = 23336.904521 eV Total energy + Delta-G solvation = -3422.499421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.88554 -38.07703 -36.77635 -34.17103 -33.24416 -31.19962 -30.55647 -29.45100 -28.97730 -27.56317 -27.15081 -25.52297 -23.76599 -22.95393 -21.90060 -20.90913 -20.27265 -19.59081 -19.22915 -17.24830 -16.61096 -15.44710 -15.33602 -15.00772 -14.89602 -14.76794 -14.35095 -14.27401 -13.91241 -13.79604 -13.41923 -13.26004 -12.98028 -12.63791 -12.52103 -12.32007 -12.14040 -12.07860 -11.88845 -11.61022 -11.52940 -11.38872 -11.35169 -11.12842 -11.03415 -10.96031 -10.88461 -10.82702 -10.50149 -10.39953 -10.27136 -9.98269 -9.52646 -9.32016 -9.08130 -8.39786 -7.87421 -7.38022 -7.22916 -6.72053 -4.29992 2.78212 3.09153 3.12373 3.13564 3.21325 3.71690 3.96254 4.27104 4.56952 4.70904 4.79506 4.80294 4.84277 5.04868 5.16479 5.21845 5.23783 5.33420 5.46135 5.46766 5.49886 5.54905 5.63247 5.67373 5.71370 5.72415 5.77002 5.83422 5.89001 5.96796 5.97774 6.01523 6.07707 6.12848 6.23910 6.33219 6.40559 6.44961 6.49444 6.51695 6.99665 7.00097 7.01103 7.11537 7.34624 7.39413 7.52788 7.55461 7.67284 7.93948 8.10611 8.20755 8.35431 8.69824 8.94524 9.03280 10.22649 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.002401 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.801704 B =11657.770629 C =12170.931389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.529 5.529 5 C 0.053 3.947 6 C -0.111 4.111 7 C 0.085 3.915 8 N -0.528 5.528 9 C 0.024 3.976 10 C 0.117 3.883 11 C -0.204 4.204 12 C -0.079 4.079 13 C -0.166 4.166 14 C 0.112 3.888 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.794 5.794 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.228 4.228 24 C -0.085 4.085 25 C -0.110 4.110 26 C 0.058 3.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.012 0.988 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.279 0.721 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 9.252 -18.299 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.254 5.254 5 C -0.075 4.075 6 C -0.149 4.149 7 C -0.023 4.023 8 N -0.252 5.252 9 C -0.124 4.124 10 C -0.009 4.009 11 C -0.205 4.205 12 C -0.098 4.098 13 C -0.186 4.186 14 C 0.109 3.891 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.247 4.247 24 C -0.104 4.104 25 C -0.148 4.148 26 C -0.070 4.070 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.134 0.866 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.726 8.325 -18.242 20.126 hybrid contribution 0.841 1.018 0.661 1.477 sum -0.885 9.344 -17.581 19.930 Atomic orbital electron populations 1.21877 0.94324 1.02571 1.01549 1.21692 0.95825 0.92228 0.93555 1.22496 1.01452 0.98405 1.02303 1.62185 1.10704 1.50836 1.01648 1.22168 1.00438 0.95248 0.89618 1.21692 0.95240 1.01599 0.96354 1.21623 0.95511 0.93932 0.91261 1.62142 1.14891 1.46225 1.01919 1.22427 0.87587 0.99512 1.02902 1.20804 0.99199 0.93736 0.87202 1.18833 0.95987 1.04303 1.01393 1.20474 0.96439 0.95980 0.96892 1.21297 0.99422 1.01072 0.96794 1.17612 0.91093 0.89699 0.90663 1.19574 0.93842 1.21750 1.14185 0.90599 1.25899 0.94717 0.97311 0.96199 1.69835 1.01813 1.35562 1.34710 0.86352 0.78939 0.81843 0.79891 1.19664 1.20050 1.18466 1.20929 1.00160 1.00906 1.02722 1.20345 0.95292 0.98223 0.96565 1.21693 1.00165 1.00397 0.92560 1.22080 0.87390 0.98494 0.99073 0.92456 0.92472 0.91700 0.90154 0.92305 0.92608 0.92239 0.95022 0.90354 0.90010 0.91362 0.95513 0.96903 0.90042 0.92113 0.96286 0.91335 0.89549 0.86603 0.90971 0.89269 0.90044 0.90078 0.91613 0.90912 0.95061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.99 37.16 0.33 -0.78 16 2 C 0.08 0.63 2.96 -67.71 -0.20 0.43 16 3 C -0.19 -1.44 8.50 37.16 0.32 -1.12 16 4 N -0.53 -5.43 4.64 -226.69 -1.05 -6.48 16 5 C 0.05 0.56 4.63 -3.83 -0.02 0.54 16 6 C -0.11 -1.40 5.10 -26.65 -0.14 -1.54 16 7 C 0.09 1.14 2.01 -67.59 -0.14 1.01 16 8 N -0.53 -8.57 4.62 -236.18 -1.09 -9.66 16 9 C 0.02 0.37 8.75 60.07 0.53 0.89 16 10 C 0.12 2.09 4.93 -4.98 -0.02 2.06 16 11 C -0.20 -4.42 4.91 -104.34 -0.51 -4.93 16 12 C -0.08 -1.86 9.67 -39.66 -0.38 -2.25 16 13 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 14 C 0.11 3.01 5.57 -106.82 -0.60 2.42 16 15 C -0.46 -12.47 9.05 -37.74 -0.34 -12.81 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 17 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 18 N -0.79 -20.75 10.97 55.55 0.61 -20.14 16 19 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 24 C -0.09 -1.91 7.86 -39.66 -0.31 -2.22 16 25 C -0.11 -1.30 4.93 -26.65 -0.13 -1.43 16 26 C 0.06 0.58 5.02 -3.83 -0.02 0.56 16 27 H 0.06 0.45 6.30 -51.93 -0.33 0.12 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.06 0.48 6.52 -51.93 -0.34 0.14 16 32 H 0.05 0.44 6.65 -51.93 -0.35 0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.33 6.62 -51.93 -0.34 -0.01 16 35 H 0.08 0.77 6.03 -51.93 -0.31 0.46 16 36 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.07 0.87 6.35 -51.93 -0.33 0.55 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.08 1.45 5.88 -51.93 -0.31 1.14 16 41 H 0.06 0.83 6.30 -51.92 -0.33 0.51 16 42 H 0.02 0.33 8.06 -51.93 -0.42 -0.08 16 43 H 0.07 1.18 5.83 -51.93 -0.30 0.87 16 44 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 45 H 0.12 3.16 6.18 -52.49 -0.32 2.83 16 46 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 47 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 48 H 0.08 1.63 7.97 -52.49 -0.42 1.21 16 49 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.74 6.50 -51.93 -0.34 0.40 16 51 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 52 H 0.03 0.31 6.73 -51.93 -0.35 -0.04 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -27.08 385.06 -12.18 -39.26 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.97 Total: 5.40 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -2.44 Total: -28.02 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -1.53 Total: -36.28 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.08 -12.18 -39.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518996.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.287 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds