Wall clock time and date at job start Tue Mar 31 2020 11:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 N 1.46897 * 109.47381 * 119.99932 * 2 1 3 5 5 C 1.46853 * 110.99856 * 299.21170 * 4 2 1 6 6 C 1.53033 * 109.52295 * 174.15878 * 5 4 2 7 7 C 1.53115 * 109.28263 * 59.17979 * 6 5 4 8 8 N 1.46893 * 109.52516 * 182.44256 * 7 6 5 9 9 C 1.46901 * 111.00087 * 175.72989 * 8 7 6 10 10 C 1.46905 * 111.00138 * 299.67955 * 8 7 6 11 11 C 1.50693 * 109.47271 * 170.00050 * 10 8 7 12 12 C 1.38627 * 119.75187 * 269.73090 * 11 10 8 13 13 C 1.37619 * 120.25101 * 179.72300 * 12 11 10 14 14 C 1.40712 * 119.74422 * 0.56874 * 13 12 11 15 15 C 1.41396 * 120.25067 * 179.68302 * 14 13 12 16 16 H 1.07995 * 120.00358 * 155.30726 * 15 14 13 17 17 C 1.39949 * 119.99508 * 335.31221 * 15 14 13 18 18 N 1.30831 * 119.99984 * 342.22991 * 17 15 14 19 19 Si 1.86803 * 120.00067 * 162.23153 * 17 15 14 20 20 H 1.48499 * 109.47060 * 94.66183 * 19 17 15 21 21 H 1.48498 * 109.46937 * 214.66469 * 19 17 15 22 22 H 1.48503 * 109.46774 * 334.66466 * 19 17 15 23 23 C 1.40721 * 119.51247 * 359.70336 * 14 13 12 24 24 C 1.37624 * 119.73969 * 0.02562 * 23 14 13 25 25 C 1.53125 * 109.15872 * 302.34690 * 7 6 5 26 26 C 1.46847 * 111.00299 * 175.00265 * 4 2 1 27 27 H 1.08998 * 109.47227 * 300.00518 * 1 2 3 28 28 H 1.09005 * 109.46791 * 60.00469 * 1 2 3 29 29 H 1.08995 * 109.47031 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47571 * 240.00322 * 2 1 3 31 31 H 1.09001 * 109.47285 * 60.00122 * 3 2 1 32 32 H 1.09003 * 109.47060 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46908 * 299.99459 * 3 2 1 34 34 H 1.08995 * 109.46304 * 294.17419 * 5 4 2 35 35 H 1.09002 * 109.45892 * 54.14081 * 5 4 2 36 36 H 1.09008 * 109.50288 * 299.23977 * 6 5 4 37 37 H 1.09000 * 109.50387 * 179.12493 * 6 5 4 38 38 H 1.08999 * 109.57665 * 62.27811 * 7 6 5 39 39 H 1.09000 * 109.47282 * 59.99624 * 9 8 7 40 40 H 1.09002 * 109.47838 * 179.97438 * 9 8 7 41 41 H 1.09008 * 109.47021 * 299.99879 * 9 8 7 42 42 H 1.08998 * 109.46841 * 290.00208 * 10 8 7 43 43 H 1.08996 * 109.46502 * 49.99859 * 10 8 7 44 44 H 1.08001 * 119.87791 * 359.97438 * 12 11 10 45 45 H 1.08000 * 120.13327 * 180.27385 * 13 12 11 46 46 H 0.96996 * 119.99421 * 179.97438 * 18 17 15 47 47 H 1.07996 * 120.13240 * 179.97438 * 23 14 13 48 48 H 1.08002 * 119.87230 * 180.02562 * 24 23 14 49 49 H 1.09000 * 109.50275 * 297.71125 * 25 7 6 50 50 H 1.08999 * 109.50173 * 177.59351 * 25 7 6 51 51 H 1.09002 * 109.46206 * 305.85171 * 26 4 2 52 52 H 1.08998 * 109.46203 * 65.83631 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5643 -0.0157 2.4206 6 6 1.9681 -0.8417 3.6439 7 6 3.4906 -1.0030 3.6650 8 7 3.8794 -1.8442 4.8047 9 6 5.3252 -2.1040 4.7982 10 6 3.4594 -1.2369 6.0747 11 6 3.6505 -2.2286 7.1932 12 6 2.6179 -3.0883 7.5342 13 6 2.7832 -4.0018 8.5501 14 6 4.0020 -4.0530 9.2515 15 6 4.1811 -4.9828 10.3015 16 1 5.1748 -5.3102 10.5693 17 6 3.0706 -5.4789 10.9938 18 7 1.9242 -4.8520 10.9265 19 14 3.2250 -7.0362 12.0139 20 1 3.5087 -6.6765 13.4264 21 1 1.9546 -7.8020 11.9436 22 1 4.3345 -7.8680 11.4824 23 6 5.0413 -3.1717 8.9004 24 6 4.8556 -2.2701 7.8773 25 6 3.9437 -1.6663 2.3614 26 6 3.4827 -0.8163 1.1751 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 2.0228 0.9712 2.4813 35 1 0.4796 0.0889 2.3948 36 1 1.4988 -1.8242 3.5907 37 1 1.6436 -0.3315 4.5508 38 1 3.9603 -0.0239 3.7579 39 1 5.8646 -1.1589 4.8613 40 1 5.5862 -2.7285 5.6527 41 1 5.5980 -2.6172 3.8760 42 1 4.0612 -0.3492 6.2695 43 1 2.4079 -0.9568 6.0132 44 1 1.6815 -3.0438 6.9980 45 1 1.9790 -4.6737 8.8113 46 1 1.1545 -5.1961 11.4060 47 1 5.9808 -3.2020 9.4323 48 1 5.6520 -1.5930 7.6058 49 1 3.5055 -2.6616 2.2880 50 1 5.0308 -1.7451 2.3519 51 1 3.7914 -1.2933 0.2449 52 1 3.9322 0.1744 1.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343518996.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:57 Heat of formation + Delta-G solvation = 6.018725 kcal Electronic energy + Delta-G solvation = -26760.011493 eV Core-core repulsion = 23336.904521 eV Total energy + Delta-G solvation = -3423.106972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83432 -39.63065 -38.13014 -35.72753 -34.54404 -32.28895 -31.97672 -31.16619 -30.25405 -28.78346 -28.06709 -26.92570 -25.13289 -23.89059 -23.12944 -22.81804 -21.50125 -21.01356 -20.11383 -19.19614 -17.52289 -17.17839 -16.39433 -16.26246 -16.08030 -15.79432 -15.71370 -15.37063 -15.26794 -15.01790 -14.72306 -14.39775 -14.20678 -14.03534 -13.77883 -13.56643 -13.32229 -13.27769 -13.04379 -12.93723 -12.81060 -12.67598 -12.65499 -12.29828 -12.29167 -12.16733 -12.09673 -11.96091 -11.86715 -11.61228 -11.46146 -11.24449 -11.19934 -11.01715 -10.95707 -9.30807 -9.26666 -9.15458 -9.02691 -8.61748 -6.30388 0.97545 1.17820 1.37808 1.48826 1.54340 2.21594 2.69013 2.96835 3.16092 3.75662 3.84537 3.90563 4.01106 4.10039 4.23127 4.26175 4.31179 4.36600 4.40836 4.43296 4.52437 4.56798 4.59794 4.62661 4.63471 4.72054 4.76420 4.79416 4.84352 4.89175 4.92640 4.94836 5.04164 5.07312 5.09855 5.13835 5.18093 5.22362 5.29022 5.33859 5.39265 5.41050 5.48587 5.49882 5.74026 5.98022 6.12444 6.16858 6.22451 6.27304 6.33746 6.38218 6.42333 6.74092 6.97097 7.07470 8.35517 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.002401 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.801704 B =11657.770629 C =12170.931389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.182 4.182 4 N -0.542 5.542 5 C 0.061 3.939 6 C -0.108 4.108 7 C 0.088 3.912 8 N -0.542 5.542 9 C 0.026 3.974 10 C 0.124 3.876 11 C -0.190 4.190 12 C -0.085 4.085 13 C -0.190 4.190 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.827 5.827 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.243 4.243 24 C -0.082 4.082 25 C -0.104 4.104 26 C 0.063 3.937 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.287 0.713 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 10.355 -20.092 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.241 4.241 4 N -0.267 5.267 5 C -0.068 4.068 6 C -0.146 4.146 7 C -0.020 4.020 8 N -0.266 5.266 9 C -0.122 4.122 10 C -0.003 4.003 11 C -0.191 4.191 12 C -0.104 4.104 13 C -0.210 4.210 14 C 0.077 3.923 15 C -0.533 4.533 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.453 5.453 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.184 1.184 23 C -0.263 4.263 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.066 4.066 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.112 0.888 48 H 0.127 0.873 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.103 0.897 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.462 9.446 -20.055 22.217 hybrid contribution 0.765 0.787 1.074 1.536 sum -0.697 10.233 -18.982 21.575 Atomic orbital electron populations 1.21858 0.93881 1.02158 1.02170 1.21759 0.96176 0.92634 0.92793 1.22437 1.01253 0.97774 1.02648 1.62174 1.10865 1.51497 1.02145 1.22066 1.00859 0.94887 0.88940 1.21643 0.94660 1.00881 0.97418 1.21675 0.95910 0.93681 0.90706 1.62048 1.15495 1.47115 1.01921 1.22389 0.87277 0.99834 1.02661 1.20689 1.00089 0.92721 0.86811 1.19243 0.94846 1.03495 1.01544 1.20689 0.97682 0.95738 0.96292 1.21245 0.99126 1.02265 0.98325 1.17952 0.92069 0.90830 0.91494 1.19810 0.94439 1.23535 1.15490 0.90909 1.26754 0.93976 1.00182 0.97118 1.69889 1.02623 1.37051 1.35729 0.85227 0.79104 0.77326 0.78239 1.18666 1.19007 1.18373 1.21137 1.00018 1.01368 1.03764 1.20621 0.96249 0.97725 0.95460 1.21637 1.00527 0.99651 0.92434 1.22038 0.87380 0.98473 0.98675 0.92730 0.90975 0.92614 0.89631 0.92840 0.92799 0.91015 0.94532 0.89758 0.91943 0.91711 0.95082 0.95623 0.92610 0.90408 0.95294 0.90574 0.88198 0.88507 0.90240 0.88806 0.87261 0.91781 0.90833 0.89713 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.99 71.98 0.65 -1.25 16 2 C 0.07 1.07 2.96 44.92 0.13 1.20 16 3 C -0.18 -2.30 8.50 71.98 0.61 -1.69 16 4 N -0.54 -10.00 4.64 -871.11 -4.04 -14.04 16 5 C 0.06 1.16 4.63 86.32 0.40 1.56 16 6 C -0.11 -2.58 5.10 30.64 0.16 -2.42 16 7 C 0.09 2.19 2.01 45.00 0.09 2.28 16 8 N -0.54 -16.70 4.62 -901.15 -4.17 -20.87 16 9 C 0.03 0.77 8.75 127.69 1.12 1.88 16 10 C 0.12 4.21 4.93 85.55 0.42 4.63 16 11 C -0.19 -8.12 4.91 -19.68 -0.10 -8.22 16 12 C -0.09 -4.08 9.67 22.22 0.21 -3.86 16 13 C -0.19 -10.39 8.70 22.73 0.20 -10.19 16 14 C 0.08 4.41 5.57 -21.29 -0.12 4.29 16 15 C -0.50 -28.13 9.05 23.46 0.21 -27.91 16 16 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 17 C 0.03 1.78 5.14 85.26 0.44 2.22 16 18 N -0.83 -44.62 10.97 21.83 0.24 -44.38 16 19 Si 0.98 39.39 29.60 68.60 2.03 41.42 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.24 -12.29 9.80 22.73 0.22 -12.07 16 24 C -0.08 -3.62 7.86 22.22 0.17 -3.44 16 25 C -0.10 -2.25 4.93 30.65 0.15 -2.09 16 26 C 0.06 1.10 5.02 86.33 0.43 1.54 16 27 H 0.05 0.75 6.30 -2.39 -0.02 0.73 16 28 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.05 0.74 6.52 -2.39 -0.02 0.72 16 32 H 0.05 0.70 6.65 -2.39 -0.02 0.69 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.04 0.68 6.62 -2.39 -0.02 0.66 16 35 H 0.08 1.52 6.03 -2.39 -0.01 1.51 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.06 1.57 6.35 -2.39 -0.02 1.55 16 38 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 1.91 5.88 -2.39 -0.01 1.90 16 41 H 0.08 1.98 6.30 -2.38 -0.02 1.96 16 42 H 0.03 0.94 8.06 -2.39 -0.02 0.92 16 43 H 0.08 2.49 5.83 -2.39 -0.01 2.47 16 44 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 45 H 0.10 5.56 6.18 -2.91 -0.02 5.55 16 46 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 47 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 48 H 0.11 4.17 7.97 -2.91 -0.02 4.15 16 49 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.07 1.46 6.50 -2.39 -0.02 1.44 16 51 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 52 H 0.04 0.63 6.73 -2.39 -0.02 0.61 16 Total: -1.00 -59.88 385.06 0.35 -59.53 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.88 Total: 31.87 kcal Atomic # 6 Polarization: -58.95 SS G_CDS: 5.41 Total: -53.54 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -7.97 Total: -79.29 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -59.88 0.35 -59.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518996.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.548 kcal (2) G-P(sol) polarization free energy of solvation -59.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds