Wall clock time and date at job start Tue Mar 31 2020 11:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46715 * 2 1 4 4 C 1.46904 * 111.00343 * 71.85201 * 3 2 1 5 5 C 1.52998 * 109.47113 * 70.28431 * 4 3 2 6 6 C 1.46905 * 110.99832 * 195.80469 * 3 2 1 7 7 C 1.53005 * 109.47218 * 160.35951 * 6 3 2 8 8 H 1.09001 * 110.62635 * 310.61080 * 7 6 3 9 9 C 1.55137 * 110.85296 * 73.81918 * 7 6 3 10 10 C 1.54910 * 101.65352 * 154.10580 * 9 7 6 11 11 N 1.47847 * 104.79476 * 322.93149 * 10 9 7 12 12 C 1.46897 * 110.99876 * 146.35781 * 11 10 9 13 13 C 1.50702 * 109.46928 * 69.16033 * 12 11 10 14 14 C 1.38643 * 119.74782 * 269.72910 * 13 12 11 15 15 C 1.37619 * 120.24459 * 179.72195 * 14 13 12 16 16 C 1.40711 * 119.74808 * 0.56468 * 15 14 13 17 17 C 1.41399 * 120.24546 * 179.68352 * 16 15 14 18 18 H 1.08001 * 119.99819 * 31.70972 * 17 16 15 19 19 C 1.39944 * 119.99968 * 211.71424 * 17 16 15 20 20 N 1.30824 * 120.00165 * 7.68911 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 187.69576 * 19 17 16 22 22 H 1.48505 * 109.46878 * 59.99750 * 21 19 17 23 23 H 1.48497 * 109.47066 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47269 * 299.99910 * 21 19 17 25 25 C 1.40720 * 119.50954 * 359.70841 * 16 15 14 26 26 C 1.37619 * 119.74674 * 359.97438 * 25 16 15 27 27 C 1.47451 * 108.56606 * 24.09251 * 11 10 9 28 28 H 1.08997 * 109.47393 * 304.46908 * 1 2 3 29 29 H 1.08997 * 109.47371 * 64.48000 * 1 2 3 30 30 H 1.09003 * 109.46394 * 184.47557 * 1 2 3 31 31 H 1.08991 * 109.47129 * 240.00019 * 2 1 3 32 32 H 1.08999 * 109.47201 * 119.99163 * 2 1 3 33 33 H 1.09002 * 109.46562 * 190.28406 * 4 3 2 34 34 H 1.08995 * 109.46554 * 310.28405 * 4 3 2 35 35 H 1.08996 * 109.46981 * 186.72596 * 5 4 3 36 36 H 1.09004 * 109.46729 * 306.72762 * 5 4 3 37 37 H 1.09003 * 109.47198 * 66.72292 * 5 4 3 38 38 H 1.09002 * 109.47065 * 40.36297 * 6 3 2 39 39 H 1.09000 * 109.47063 * 280.36202 * 6 3 2 40 40 H 1.09004 * 110.99447 * 272.20021 * 9 7 6 41 41 H 1.09003 * 110.98974 * 36.01841 * 9 7 6 42 42 H 1.08996 * 110.37324 * 204.09753 * 10 9 7 43 43 H 1.09002 * 110.36784 * 81.75633 * 10 9 7 44 44 H 1.08994 * 109.47245 * 189.15395 * 12 11 10 45 45 H 1.08996 * 109.47529 * 309.15769 * 12 11 10 46 46 H 1.07998 * 119.87252 * 359.96994 * 14 13 12 47 47 H 1.08004 * 120.12239 * 180.27285 * 15 14 13 48 48 H 0.96997 * 119.99951 * 180.02562 * 20 19 17 49 49 H 1.08003 * 120.12461 * 179.97438 * 25 16 15 50 50 H 1.08001 * 119.87399 * 180.02562 * 26 25 16 51 51 H 1.08990 * 109.88533 * 239.60262 * 27 11 10 52 52 H 1.09001 * 109.88691 * 118.41695 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7923 2.0238 1.3032 5 6 2.7274 1.4053 2.3443 6 6 3.4392 1.4415 -0.3735 7 6 3.7887 2.8572 -0.8372 8 1 3.0657 3.2097 -1.5728 9 6 3.8635 3.8305 0.3686 10 6 4.8317 4.9157 -0.1649 11 7 5.8276 4.1724 -0.9658 12 6 6.2828 4.9703 -2.1121 13 6 7.1105 6.1296 -1.6200 14 6 6.4962 7.3369 -1.3243 15 6 7.2414 8.4005 -0.8688 16 6 8.6333 8.2629 -0.7150 17 6 9.4099 9.3509 -0.2542 18 1 8.9843 10.0642 0.4360 19 6 10.7301 9.5035 -0.6926 20 7 11.1983 8.7319 -1.6397 21 14 11.8241 10.8089 0.0746 22 1 11.9572 10.5497 1.5308 23 1 13.1659 10.7658 -0.5601 24 1 11.2189 12.1484 -0.1364 25 6 9.2467 7.0346 -1.0238 26 6 8.4809 5.9824 -1.4715 27 6 5.2198 2.9052 -1.4122 28 1 -0.3634 0.5816 0.8472 29 1 -0.3634 0.4427 -0.9274 30 1 -0.3632 -1.0246 0.0802 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.9928 3.0923 1.2239 34 1 0.7571 1.8699 1.6076 35 1 2.4779 1.7924 3.3322 36 1 2.6112 0.3215 2.3387 37 1 3.7592 1.6614 2.1037 38 1 3.6304 0.7367 -1.1827 39 1 4.0525 1.1798 0.4887 40 1 2.8841 4.2552 0.5890 41 1 4.2786 3.3341 1.2458 42 1 5.3185 5.4302 0.6635 43 1 4.2951 5.6275 -0.7922 44 1 6.8865 4.3472 -2.7718 45 1 5.4184 5.3472 -2.6587 46 1 5.4285 7.4417 -1.4480 47 1 6.7602 9.3387 -0.6348 48 1 12.1134 8.8375 -1.9433 49 1 10.3143 6.9181 -0.9098 50 1 8.9495 5.0387 -1.7086 51 1 5.7996 2.0629 -1.0350 52 1 5.1832 2.8749 -2.5011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343538755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:51 Heat of formation + Delta-G solvation = 24.919173 kcal Electronic energy + Delta-G solvation = -26420.938915 eV Core-core repulsion = 22998.651528 eV Total energy + Delta-G solvation = -3422.287387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.71798 -38.15790 -37.08342 -33.95034 -32.71975 -31.55177 -30.50914 -29.39486 -29.24767 -28.33232 -26.39983 -24.92542 -23.86391 -23.11960 -21.16102 -20.71074 -20.37383 -19.83533 -19.66115 -17.21406 -16.74225 -16.09504 -15.51053 -15.30182 -15.20502 -14.51993 -14.18331 -13.94115 -13.78194 -13.52577 -13.41703 -13.26685 -12.98034 -12.66523 -12.51287 -12.35419 -12.30916 -12.00894 -11.87785 -11.74942 -11.67107 -11.50073 -11.36174 -11.14016 -11.05370 -11.00962 -10.88276 -10.66740 -10.58432 -10.29309 -10.25860 -10.20352 -9.51570 -9.28931 -9.14889 -8.47518 -7.88311 -7.38715 -7.15587 -6.62272 -4.31611 2.80788 3.10086 3.12129 3.13620 3.21500 3.66530 3.99799 4.39985 4.56109 4.66837 4.73458 4.79713 4.92371 4.94690 5.01194 5.07369 5.16896 5.22859 5.32314 5.42415 5.48578 5.49665 5.58924 5.62935 5.67856 5.73193 5.74542 5.79446 5.82320 5.87277 5.89445 5.95589 5.99969 6.12265 6.18660 6.26701 6.37125 6.41112 6.42098 6.50997 6.89265 6.89587 6.99929 7.15334 7.32465 7.36056 7.45555 7.52619 7.68980 7.91428 8.12513 8.18617 8.37133 8.71429 8.97082 9.03532 10.32569 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.002182 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.671824 B =12828.296134 C =13092.422097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.535 5.535 4 C 0.034 3.966 5 C -0.195 4.195 6 C 0.059 3.941 7 C -0.101 4.101 8 H 0.080 0.920 9 C -0.127 4.127 10 C 0.050 3.950 11 N -0.521 5.521 12 C 0.114 3.886 13 C -0.195 4.195 14 C -0.089 4.089 15 C -0.219 4.219 16 C 0.111 3.889 17 C -0.468 4.468 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.808 5.808 21 Si 0.911 3.089 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.155 4.155 26 C -0.085 4.085 27 C 0.046 3.954 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.278 0.722 49 H 0.118 0.882 50 H 0.087 0.913 51 H 0.070 0.930 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.636 -15.073 3.100 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.259 5.259 4 C -0.093 4.093 5 C -0.254 4.254 6 C -0.069 4.069 7 C -0.121 4.121 8 H 0.098 0.902 9 C -0.165 4.165 10 C -0.077 4.077 11 N -0.245 5.245 12 C -0.012 4.012 13 C -0.197 4.197 14 C -0.108 4.108 15 C -0.239 4.239 16 C 0.108 3.892 17 C -0.498 4.498 18 H 0.092 0.908 19 C -0.143 4.143 20 N -0.435 5.435 21 Si 0.736 3.264 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.175 4.175 26 C -0.104 4.104 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.135 0.865 50 H 0.105 0.895 51 H 0.088 0.912 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.242 -14.961 2.878 21.551 hybrid contribution 0.361 0.351 0.325 0.600 sum -14.881 -14.610 3.203 21.098 Atomic orbital electron populations 1.21775 0.95038 1.01115 1.02487 1.22132 0.96084 0.89375 1.00689 1.62225 1.17920 1.16748 1.28966 1.22500 0.99188 1.00532 0.87102 1.22473 1.01562 1.01098 1.00218 1.22202 0.87867 0.96957 0.99835 1.22355 0.97042 0.94780 0.97885 0.90181 1.23027 0.98966 0.96685 0.97792 1.22988 0.91733 0.95296 0.97711 1.63710 1.35673 1.03738 1.21399 1.20947 0.96505 0.93367 0.90411 1.18894 0.93619 0.93944 1.13236 1.20360 0.96640 0.93515 1.00257 1.21016 0.95112 0.97497 1.10281 1.17630 0.90915 0.92175 0.88430 1.19505 0.96144 1.09240 1.24938 0.90779 1.25852 0.98229 0.96600 0.93611 1.69775 1.16554 1.35201 1.21942 0.86337 0.78772 0.81176 0.80155 1.19018 1.20447 1.19176 1.21351 0.99647 0.92075 1.04388 1.20519 0.92938 0.97205 0.99749 1.22834 0.92801 0.94223 0.98410 0.92669 0.92050 0.92643 0.91123 0.94619 0.89213 0.91094 0.92114 0.92850 0.91609 0.91235 0.93345 0.90866 0.90974 0.90283 0.93894 0.91781 0.95757 0.89965 0.89164 0.91087 0.86463 0.89503 0.91155 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.04 37.16 0.37 -0.63 16 2 C 0.05 0.35 5.59 -3.82 -0.02 0.33 16 3 N -0.54 -4.85 4.60 -234.62 -1.08 -5.93 16 4 C 0.03 0.29 5.42 -3.82 -0.02 0.27 16 5 C -0.20 -1.59 8.92 37.16 0.33 -1.25 16 6 C 0.06 0.57 4.34 -3.82 -0.02 0.55 16 7 C -0.10 -1.12 3.12 -88.80 -0.28 -1.39 16 8 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.13 -1.48 4.74 -24.59 -0.12 -1.60 16 10 C 0.05 0.76 5.61 -2.29 -0.01 0.74 16 11 N -0.52 -8.42 5.15 -232.69 -1.20 -9.62 16 12 C 0.11 2.05 4.71 -4.98 -0.02 2.02 16 13 C -0.20 -4.25 5.11 -104.33 -0.53 -4.79 16 14 C -0.09 -1.99 8.89 -39.66 -0.35 -2.34 16 15 C -0.22 -5.44 9.80 -38.87 -0.38 -5.82 16 16 C 0.11 3.00 5.53 -106.82 -0.59 2.41 16 17 C -0.47 -12.65 9.06 -37.74 -0.34 -12.99 16 18 H 0.07 1.93 7.86 -52.49 -0.41 1.51 16 19 C 0.07 1.87 5.29 -17.34 -0.09 1.78 16 20 N -0.81 -21.42 10.89 55.55 0.60 -20.81 16 21 Si 0.91 19.19 29.57 -169.99 -5.03 14.16 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.16 -4.10 8.64 -38.87 -0.34 -4.43 16 26 C -0.09 -2.02 9.67 -39.66 -0.38 -2.40 16 27 C 0.05 0.59 6.46 -2.83 -0.02 0.57 16 28 H 0.05 0.38 6.45 -51.93 -0.34 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.53 7.69 -51.93 -0.40 0.13 16 32 H 0.04 0.27 6.17 -51.93 -0.32 -0.05 16 33 H 0.09 0.81 4.61 -51.93 -0.24 0.57 16 34 H 0.07 0.56 6.32 -51.93 -0.33 0.23 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.42 6.29 -51.93 -0.33 0.10 16 37 H 0.07 0.60 4.84 -51.93 -0.25 0.35 16 38 H 0.07 0.63 7.65 -51.93 -0.40 0.23 16 39 H 0.05 0.48 5.38 -51.93 -0.28 0.20 16 40 H 0.07 0.78 6.22 -51.93 -0.32 0.46 16 41 H 0.07 0.84 6.17 -51.93 -0.32 0.52 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.04 0.66 6.99 -51.93 -0.36 0.30 16 44 H 0.06 1.11 7.97 -51.93 -0.41 0.69 16 45 H 0.02 0.42 7.79 -51.93 -0.40 0.02 16 46 H 0.08 1.64 7.48 -52.49 -0.39 1.25 16 47 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 48 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 49 H 0.12 3.22 6.34 -52.48 -0.33 2.88 16 50 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 51 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 52 H 0.05 0.63 7.55 -51.93 -0.39 0.24 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -27.39 385.17 -12.44 -39.83 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.73 Total: 5.54 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -2.81 Total: -28.98 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -1.67 Total: -36.36 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.39 -12.44 -39.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.752 kcal (2) G-P(sol) polarization free energy of solvation -27.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds