Wall clock time and date at job start Tue Mar 31 2020 11:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46715 * 2 1 4 4 C 1.46904 * 111.00343 * 71.85201 * 3 2 1 5 5 C 1.52998 * 109.47113 * 70.28431 * 4 3 2 6 6 C 1.46905 * 110.99832 * 195.80469 * 3 2 1 7 7 C 1.53005 * 109.47218 * 160.35951 * 6 3 2 8 8 H 1.09001 * 110.62635 * 310.61080 * 7 6 3 9 9 C 1.55137 * 110.85296 * 73.81918 * 7 6 3 10 10 C 1.54910 * 101.65352 * 154.10580 * 9 7 6 11 11 N 1.47847 * 104.79476 * 322.93149 * 10 9 7 12 12 C 1.46897 * 110.99876 * 146.35781 * 11 10 9 13 13 C 1.50702 * 109.46928 * 69.16033 * 12 11 10 14 14 C 1.38643 * 119.74782 * 269.72910 * 13 12 11 15 15 C 1.37619 * 120.24459 * 179.72195 * 14 13 12 16 16 C 1.40711 * 119.74808 * 0.56468 * 15 14 13 17 17 C 1.41399 * 120.24546 * 179.68352 * 16 15 14 18 18 H 1.08001 * 119.99819 * 31.70972 * 17 16 15 19 19 C 1.39944 * 119.99968 * 211.71424 * 17 16 15 20 20 N 1.30824 * 120.00165 * 7.68911 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 187.69576 * 19 17 16 22 22 H 1.48505 * 109.46878 * 59.99750 * 21 19 17 23 23 H 1.48497 * 109.47066 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47269 * 299.99910 * 21 19 17 25 25 C 1.40720 * 119.50954 * 359.70841 * 16 15 14 26 26 C 1.37619 * 119.74674 * 359.97438 * 25 16 15 27 27 C 1.47451 * 108.56606 * 24.09251 * 11 10 9 28 28 H 1.08997 * 109.47393 * 304.46908 * 1 2 3 29 29 H 1.08997 * 109.47371 * 64.48000 * 1 2 3 30 30 H 1.09003 * 109.46394 * 184.47557 * 1 2 3 31 31 H 1.08991 * 109.47129 * 240.00019 * 2 1 3 32 32 H 1.08999 * 109.47201 * 119.99163 * 2 1 3 33 33 H 1.09002 * 109.46562 * 190.28406 * 4 3 2 34 34 H 1.08995 * 109.46554 * 310.28405 * 4 3 2 35 35 H 1.08996 * 109.46981 * 186.72596 * 5 4 3 36 36 H 1.09004 * 109.46729 * 306.72762 * 5 4 3 37 37 H 1.09003 * 109.47198 * 66.72292 * 5 4 3 38 38 H 1.09002 * 109.47065 * 40.36297 * 6 3 2 39 39 H 1.09000 * 109.47063 * 280.36202 * 6 3 2 40 40 H 1.09004 * 110.99447 * 272.20021 * 9 7 6 41 41 H 1.09003 * 110.98974 * 36.01841 * 9 7 6 42 42 H 1.08996 * 110.37324 * 204.09753 * 10 9 7 43 43 H 1.09002 * 110.36784 * 81.75633 * 10 9 7 44 44 H 1.08994 * 109.47245 * 189.15395 * 12 11 10 45 45 H 1.08996 * 109.47529 * 309.15769 * 12 11 10 46 46 H 1.07998 * 119.87252 * 359.96994 * 14 13 12 47 47 H 1.08004 * 120.12239 * 180.27285 * 15 14 13 48 48 H 0.96997 * 119.99951 * 180.02562 * 20 19 17 49 49 H 1.08003 * 120.12461 * 179.97438 * 25 16 15 50 50 H 1.08001 * 119.87399 * 180.02562 * 26 25 16 51 51 H 1.08990 * 109.88533 * 239.60262 * 27 11 10 52 52 H 1.09001 * 109.88691 * 118.41695 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7923 2.0238 1.3032 5 6 2.7274 1.4053 2.3443 6 6 3.4392 1.4415 -0.3735 7 6 3.7887 2.8572 -0.8372 8 1 3.0657 3.2097 -1.5728 9 6 3.8635 3.8305 0.3686 10 6 4.8317 4.9157 -0.1649 11 7 5.8276 4.1724 -0.9658 12 6 6.2828 4.9703 -2.1121 13 6 7.1105 6.1296 -1.6200 14 6 6.4962 7.3369 -1.3243 15 6 7.2414 8.4005 -0.8688 16 6 8.6333 8.2629 -0.7150 17 6 9.4099 9.3509 -0.2542 18 1 8.9843 10.0642 0.4360 19 6 10.7301 9.5035 -0.6926 20 7 11.1983 8.7319 -1.6397 21 14 11.8241 10.8089 0.0746 22 1 11.9572 10.5497 1.5308 23 1 13.1659 10.7658 -0.5601 24 1 11.2189 12.1484 -0.1364 25 6 9.2467 7.0346 -1.0238 26 6 8.4809 5.9824 -1.4715 27 6 5.2198 2.9052 -1.4122 28 1 -0.3634 0.5816 0.8472 29 1 -0.3634 0.4427 -0.9274 30 1 -0.3632 -1.0246 0.0802 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.9928 3.0923 1.2239 34 1 0.7571 1.8699 1.6076 35 1 2.4779 1.7924 3.3322 36 1 2.6112 0.3215 2.3387 37 1 3.7592 1.6614 2.1037 38 1 3.6304 0.7367 -1.1827 39 1 4.0525 1.1798 0.4887 40 1 2.8841 4.2552 0.5890 41 1 4.2786 3.3341 1.2458 42 1 5.3185 5.4302 0.6635 43 1 4.2951 5.6275 -0.7922 44 1 6.8865 4.3472 -2.7718 45 1 5.4184 5.3472 -2.6587 46 1 5.4285 7.4417 -1.4480 47 1 6.7602 9.3387 -0.6348 48 1 12.1134 8.8375 -1.9433 49 1 10.3143 6.9181 -0.9098 50 1 8.9495 5.0387 -1.7086 51 1 5.7996 2.0629 -1.0350 52 1 5.1832 2.8749 -2.5011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343538755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:50 Heat of formation + Delta-G solvation = 10.514923 kcal Electronic energy + Delta-G solvation = -26421.563530 eV Core-core repulsion = 22998.651528 eV Total energy + Delta-G solvation = -3422.912002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.71402 -39.52198 -38.44485 -35.70473 -33.98157 -32.34943 -31.73779 -31.12022 -30.73029 -29.26385 -27.99187 -25.77690 -25.22153 -24.08025 -22.88777 -22.23906 -21.36007 -21.18749 -20.59245 -19.17423 -17.62025 -17.15110 -16.78371 -16.49491 -16.36793 -15.78921 -15.71752 -15.48849 -15.03417 -14.64104 -14.39498 -14.26183 -14.10252 -13.96690 -13.80936 -13.62699 -13.36868 -13.26241 -13.04253 -12.91398 -12.76562 -12.74655 -12.57868 -12.46667 -12.39553 -12.15517 -12.11089 -11.90589 -11.70175 -11.51463 -11.47220 -11.32390 -11.18005 -11.04225 -11.03534 -9.32268 -9.22267 -9.14547 -9.00399 -8.54037 -6.33988 0.97720 1.16394 1.37863 1.49719 1.51773 2.23169 2.75108 2.98060 3.26655 3.68823 3.76515 3.83890 4.01360 4.11824 4.20099 4.30079 4.33231 4.34593 4.36422 4.45618 4.49469 4.55171 4.58366 4.60738 4.61433 4.74495 4.75419 4.78581 4.81657 4.90714 4.92615 4.97495 5.06939 5.10441 5.10906 5.12362 5.18278 5.19916 5.24094 5.31789 5.39716 5.46045 5.48610 5.52856 5.74951 5.94531 6.12978 6.15206 6.19458 6.24649 6.30494 6.32282 6.42775 6.74214 6.98297 7.06458 8.42738 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.002182 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.671824 B =12828.296134 C =13092.422097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.543 5.543 4 C 0.035 3.965 5 C -0.190 4.190 6 C 0.065 3.935 7 C -0.089 4.089 8 H 0.077 0.923 9 C -0.115 4.115 10 C 0.048 3.952 11 N -0.538 5.538 12 C 0.121 3.879 13 C -0.181 4.181 14 C -0.087 4.087 15 C -0.234 4.234 16 C 0.076 3.924 17 C -0.506 4.506 18 H 0.072 0.928 19 C 0.029 3.971 20 N -0.841 5.841 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.261 1.261 25 C -0.178 4.178 26 C -0.092 4.092 27 C 0.047 3.953 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.284 0.716 49 H 0.097 0.903 50 H 0.102 0.898 51 H 0.076 0.924 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 -16.336 3.132 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 N -0.266 5.266 4 C -0.093 4.093 5 C -0.248 4.248 6 C -0.063 4.063 7 C -0.109 4.109 8 H 0.096 0.904 9 C -0.152 4.152 10 C -0.080 4.080 11 N -0.262 5.262 12 C -0.007 4.007 13 C -0.183 4.183 14 C -0.106 4.106 15 C -0.253 4.253 16 C 0.074 3.926 17 C -0.537 4.537 18 H 0.090 0.910 19 C -0.183 4.183 20 N -0.468 5.468 21 Si 0.806 3.194 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.185 1.185 25 C -0.198 4.198 26 C -0.111 4.111 27 C -0.081 4.081 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.128 0.872 47 H 0.113 0.887 48 H 0.095 0.905 49 H 0.115 0.885 50 H 0.120 0.880 51 H 0.094 0.906 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.813 -16.244 2.909 23.559 hybrid contribution 0.712 0.615 0.286 0.983 sum -16.101 -15.629 3.195 22.666 Atomic orbital electron populations 1.21743 0.94381 1.01843 1.02058 1.22182 0.96590 0.88630 1.00963 1.62218 1.17435 1.17664 1.29303 1.22490 0.99665 1.00100 0.87014 1.22415 1.00775 1.01233 1.00409 1.22106 0.88310 0.95898 1.00004 1.22234 0.95776 0.95604 0.97245 0.90439 1.22956 0.98642 0.95699 0.97935 1.22961 0.91978 0.96166 0.96861 1.63570 1.37095 1.04671 1.20895 1.20854 0.96453 0.92291 0.91064 1.19332 0.93291 0.95160 1.10512 1.20647 0.97920 0.92956 0.99038 1.21223 0.94676 0.98678 1.10752 1.17970 0.92192 0.92679 0.89743 1.19756 0.97663 1.09964 1.26268 0.90995 1.26730 0.99132 0.98821 0.93667 1.69854 1.17179 1.36817 1.22990 0.85219 0.76889 0.78149 0.79180 1.18557 1.19297 1.18523 1.21293 0.99055 0.93073 1.06344 1.20746 0.93910 0.97088 0.99366 1.22870 0.93750 0.92475 0.99026 0.92784 0.92692 0.91429 0.90799 0.94382 0.89819 0.90402 0.91595 0.92608 0.92641 0.90489 0.93535 0.89555 0.90907 0.92726 0.94141 0.90921 0.94581 0.87159 0.88653 0.90531 0.88478 0.87989 0.90594 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 10.04 71.98 0.72 -0.92 16 2 C 0.04 0.58 5.59 86.30 0.48 1.06 16 3 N -0.54 -8.54 4.60 -896.21 -4.12 -12.66 16 4 C 0.03 0.52 5.42 86.30 0.47 0.98 16 5 C -0.19 -2.72 8.92 71.98 0.64 -2.08 16 6 C 0.06 1.08 4.34 86.30 0.37 1.45 16 7 C -0.09 -1.75 3.12 -9.61 -0.03 -1.78 16 8 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 9 C -0.11 -2.45 4.74 31.98 0.15 -2.30 16 10 C 0.05 1.38 5.61 86.77 0.49 1.87 16 11 N -0.54 -16.44 5.15 -890.11 -4.59 -21.03 16 12 C 0.12 4.07 4.71 85.56 0.40 4.48 16 13 C -0.18 -7.77 5.11 -19.67 -0.10 -7.87 16 14 C -0.09 -3.84 8.89 22.22 0.20 -3.65 16 15 C -0.23 -11.82 9.80 22.73 0.22 -11.60 16 16 C 0.08 4.28 5.53 -21.29 -0.12 4.17 16 17 C -0.51 -28.45 9.06 23.46 0.21 -28.23 16 18 H 0.07 3.90 7.86 -2.91 -0.02 3.87 16 19 C 0.03 1.52 5.29 85.26 0.45 1.97 16 20 N -0.84 -46.02 10.89 21.83 0.24 -45.78 16 21 Si 0.98 39.99 29.57 68.60 2.03 42.02 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 C -0.18 -9.77 8.64 22.73 0.20 -9.57 16 26 C -0.09 -4.42 9.67 22.22 0.21 -4.20 16 27 C 0.05 1.09 6.46 86.64 0.56 1.65 16 28 H 0.05 0.63 6.45 -2.39 -0.02 0.62 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.93 7.69 -2.39 -0.02 0.91 16 32 H 0.04 0.49 6.17 -2.39 -0.01 0.48 16 33 H 0.08 1.33 4.61 -2.39 -0.01 1.32 16 34 H 0.08 1.05 6.32 -2.39 -0.02 1.04 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.77 6.29 -2.39 -0.02 0.76 16 37 H 0.05 0.92 4.84 -2.39 -0.01 0.90 16 38 H 0.08 1.18 7.65 -2.39 -0.02 1.16 16 39 H 0.05 0.81 5.38 -2.39 -0.01 0.80 16 40 H 0.09 1.65 6.22 -2.38 -0.01 1.63 16 41 H 0.07 1.57 6.17 -2.39 -0.01 1.56 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.18 6.99 -2.39 -0.02 1.16 16 44 H 0.07 2.34 7.97 -2.39 -0.02 2.32 16 45 H 0.04 1.15 7.79 -2.39 -0.02 1.13 16 46 H 0.11 4.21 7.48 -2.91 -0.02 4.19 16 47 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 48 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 49 H 0.10 5.62 6.34 -2.91 -0.02 5.60 16 50 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 51 H 0.08 1.71 7.82 -2.39 -0.02 1.69 16 52 H 0.06 1.29 7.55 -2.39 -0.02 1.27 16 Total: -1.00 -60.45 385.17 -0.01 -60.47 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.89 Total: 31.58 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 5.54 Total: -54.59 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -8.47 Total: -79.48 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -60.45 -0.01 -60.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343538755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.983 kcal (2) G-P(sol) polarization free energy of solvation -60.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds